Wall clock time and date at job start Tue Mar 31 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48506 * 109.46936 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47305 * 30.00181 * 3 2 1 6 6 H 1.48495 * 109.47120 * 150.00479 * 3 2 1 7 7 C 1.37879 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99746 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99777 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00443 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00276 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47653 * 180.02562 * 13 11 10 15 15 C 1.34736 * 117.00183 * 179.97438 * 14 13 11 16 16 O 1.21474 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.47704 * 119.99609 * 179.97438 * 15 14 13 18 18 C 1.39539 * 119.63140 * 180.22829 * 17 15 14 19 19 C 1.38261 * 119.18046 * 180.27640 * 18 17 15 20 20 C 1.39381 * 118.45023 * 359.50432 * 19 18 17 21 21 N 1.39080 * 120.39960 * 180.27384 * 20 19 18 22 22 C 1.39650 * 119.19668 * 0.25820 * 20 19 18 23 23 Cl 1.73595 * 119.62602 * 179.97438 * 22 20 19 24 24 N 1.31372 * 120.75213 * 359.97438 * 22 20 19 25 25 H 0.96998 * 120.00406 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46935 * 60.00419 * 9 7 2 27 27 H 1.09000 * 109.47316 * 300.00032 * 9 7 2 28 28 H 0.97003 * 120.00532 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.47286 * 59.99737 * 13 11 10 30 30 H 1.09000 * 109.47086 * 300.00357 * 13 11 10 31 31 H 1.07996 * 120.40645 * 0.03807 * 18 17 15 32 32 H 1.08002 * 120.77680 * 179.78711 * 19 18 17 33 33 H 0.96998 * 120.00374 * 0.02562 * 21 20 19 34 34 H 0.97002 * 119.99827 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 8 7.2793 -4.2423 -0.0029 15 6 7.8910 -5.4428 -0.0028 16 8 7.2294 -6.4615 -0.0028 17 6 9.3660 -5.5200 -0.0038 18 6 9.9916 -6.7673 -0.0085 19 6 11.3728 -6.8287 -0.0036 20 6 12.0906 -5.6339 -0.0047 21 7 13.4814 -5.6484 -0.0056 22 6 11.3965 -4.4222 -0.0051 23 17 12.2793 -2.9275 -0.0057 24 7 10.0829 -4.4005 -0.0050 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3695 -3.3126 -0.0010 29 1 5.4634 -4.7561 -0.8922 30 1 5.4646 -4.7562 0.8877 31 1 9.4041 -7.6734 -0.0121 32 1 11.8837 -7.7802 -0.0036 33 1 13.9576 -6.4934 -0.0059 34 1 13.9751 -4.8134 -0.0059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772058080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:13 Heat of formation + Delta-G solvation = -85.258308 kcal Electronic energy + Delta-G solvation = -22071.306315 eV Core-core repulsion = 18223.506187 eV Total energy + Delta-G solvation = -3847.800128 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15721 -40.07147 -38.74072 -37.02395 -36.38856 -35.93379 -34.30202 -32.53717 -32.38468 -30.39680 -29.22945 -27.11716 -24.85504 -24.09372 -22.22150 -21.45125 -20.04649 -18.90688 -18.18249 -17.76222 -17.29778 -16.96325 -16.68432 -16.15936 -15.70230 -15.25935 -15.24190 -15.01113 -14.53670 -14.19994 -13.91707 -13.44059 -13.14983 -13.02121 -12.47677 -12.31513 -12.24456 -12.07874 -11.86352 -11.67913 -11.05864 -10.99565 -10.78850 -10.67317 -10.13697 -10.10480 -9.95900 -9.49798 -9.25420 -8.77554 -8.41525 -8.19846 -6.20550 -4.23210 0.18282 0.61058 1.40558 2.13507 2.29059 2.94056 3.11754 3.29186 3.31264 3.35736 3.44769 3.73736 3.95310 4.15567 4.34968 4.44696 4.52781 4.77898 5.07725 5.14386 5.14728 5.23499 5.29766 5.42084 5.68987 6.22159 6.42685 6.79178 6.84711 7.06655 7.09952 7.17372 7.36846 7.64269 8.10616 8.46824 8.73863 8.86670 9.38955 10.91216 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.002542 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.859938 B =11014.241487 C =12208.654485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.701 5.701 11 C 0.501 3.499 12 O -0.531 6.531 13 C 0.047 3.953 14 O -0.305 6.305 15 C 0.530 3.470 16 O -0.505 6.505 17 C 0.044 3.956 18 C -0.044 4.044 19 C -0.162 4.162 20 C 0.221 3.779 21 N -0.848 5.848 22 C 0.097 3.903 23 Cl -0.024 7.024 24 N -0.376 5.376 25 H 0.268 0.732 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.399 0.601 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.408 0.592 34 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.377 -16.840 0.010 32.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.352 5.352 11 C 0.284 3.716 12 O -0.407 6.407 13 C -0.031 4.031 14 O -0.218 6.218 15 C 0.373 3.627 16 O -0.394 6.394 17 C -0.094 4.094 18 C -0.065 4.065 19 C -0.193 4.193 20 C 0.108 3.892 21 N -0.386 5.386 22 C -0.078 4.078 23 Cl 0.005 6.995 24 N -0.088 5.088 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.232 0.768 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.177 0.823 32 H 0.172 0.828 33 H 0.238 0.762 34 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 28.119 -15.374 0.012 32.047 hybrid contribution 0.713 -0.121 -0.026 0.724 sum 28.832 -15.496 -0.013 32.732 Atomic orbital electron populations 1.69876 1.06208 1.27467 1.49327 1.24788 0.94801 0.99188 0.93823 0.86819 0.80620 0.83183 0.79113 1.19799 1.20887 1.18401 1.21074 0.88372 0.95312 1.53479 0.90122 1.19546 0.95288 0.78044 0.97070 1.46046 1.04828 1.11449 1.72836 1.19897 0.83684 0.89434 0.78552 1.90726 1.55238 1.45578 1.49195 1.22894 0.77749 0.97532 1.04912 1.86746 1.21507 1.30931 1.82637 1.20527 0.87555 0.81812 0.72794 1.90861 1.65647 1.36116 1.46727 1.19518 0.90522 0.88643 1.10699 1.21923 0.94317 0.98297 0.91943 1.20975 0.93430 0.96768 1.08086 1.18565 0.85797 0.92970 0.91906 1.42520 1.02426 1.12489 1.81197 1.21028 0.89379 0.86662 1.10722 1.98406 1.71965 1.32203 1.96965 1.66785 1.05591 1.31229 1.05174 0.92229 0.95439 0.95889 0.76760 0.88148 0.88155 0.82265 0.82763 0.76167 0.76066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.88 16 9 C 0.22 5.51 4.50 -5.19 -0.02 5.49 16 10 N -0.70 -14.31 5.55 -61.47 -0.34 -14.65 16 11 C 0.50 10.01 7.91 -10.99 -0.09 9.92 16 12 O -0.53 -12.91 16.50 -14.10 -0.23 -13.14 16 13 C 0.05 0.72 5.95 36.01 0.21 0.94 16 14 O -0.31 -5.21 9.56 -47.27 -0.45 -5.66 16 15 C 0.53 7.75 7.94 34.60 0.27 8.03 16 16 O -0.51 -7.46 16.10 -19.24 -0.31 -7.77 16 17 C 0.04 0.55 6.74 -83.04 -0.56 -0.01 16 18 C -0.04 -0.37 9.62 -39.09 -0.38 -0.74 16 19 C -0.16 -0.95 10.02 -39.15 -0.39 -1.34 16 20 C 0.22 1.54 6.79 -83.62 -0.57 0.97 16 21 N -0.85 -2.89 9.02 32.53 0.29 -2.59 16 22 C 0.10 1.04 7.30 -17.22 -0.13 0.91 16 23 Cl -0.02 -0.23 27.76 -51.86 -1.44 -1.67 16 24 N -0.38 -5.16 10.08 -6.80 -0.07 -5.23 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 27 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 28 H 0.40 6.97 8.32 -40.82 -0.34 6.63 16 29 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.16 1.06 7.63 -52.49 -0.40 0.66 16 32 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 33 H 0.41 0.22 8.85 -40.82 -0.36 -0.14 16 34 H 0.41 1.26 7.51 -40.82 -0.31 0.96 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -36.34 326.36 -6.63 -42.96 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.02 Total: 0.69 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: -2.08 Total: 10.98 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.66 Total: -48.24 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.99 Total: -26.57 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.44 Total: -1.67 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -36.34 -6.63 -42.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772058080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.296 kcal (2) G-P(sol) polarization free energy of solvation -36.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds