Wall clock time and date at job start Tue Mar 31 2020 04:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99902 * 2 1 4 4 H 1.48506 * 109.46936 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47305 * 30.00181 * 3 2 1 6 6 H 1.48495 * 109.47120 * 150.00479 * 3 2 1 7 7 C 1.37879 * 119.99957 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00136 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99746 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.34775 * 119.99777 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00443 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00276 * 180.02562 * 11 10 9 14 14 O 1.45196 * 109.47653 * 180.02562 * 13 11 10 15 15 C 1.34736 * 117.00183 * 179.97438 * 14 13 11 16 16 O 1.21474 * 119.99903 * 0.02562 * 15 14 13 17 17 C 1.47704 * 119.99609 * 179.97438 * 15 14 13 18 18 C 1.39539 * 119.63140 * 180.22829 * 17 15 14 19 19 C 1.38261 * 119.18046 * 180.27640 * 18 17 15 20 20 C 1.39381 * 118.45023 * 359.50432 * 19 18 17 21 21 N 1.39080 * 120.39960 * 180.27384 * 20 19 18 22 22 C 1.39650 * 119.19668 * 0.25820 * 20 19 18 23 23 Cl 1.73595 * 119.62602 * 179.97438 * 22 20 19 24 24 N 1.31372 * 120.75213 * 359.97438 * 22 20 19 25 25 H 0.96998 * 120.00406 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46935 * 60.00419 * 9 7 2 27 27 H 1.09000 * 109.47316 * 300.00032 * 9 7 2 28 28 H 0.97003 * 120.00532 * 0.02562 * 10 9 7 29 29 H 1.09001 * 109.47286 * 59.99737 * 13 11 10 30 30 H 1.09000 * 109.47086 * 300.00357 * 13 11 10 31 31 H 1.07996 * 120.40645 * 0.03807 * 18 17 15 32 32 H 1.08002 * 120.77680 * 179.78711 * 19 18 17 33 33 H 0.96998 * 120.00374 * 0.02562 * 21 20 19 34 34 H 0.97002 * 119.99827 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 3.9998 -2.5752 -0.0010 11 6 5.3249 -2.8215 -0.0020 12 8 6.1131 -1.8997 -0.0025 13 6 5.8273 -4.2423 -0.0024 14 8 7.2793 -4.2423 -0.0029 15 6 7.8910 -5.4428 -0.0028 16 8 7.2294 -6.4615 -0.0028 17 6 9.3660 -5.5200 -0.0038 18 6 9.9916 -6.7673 -0.0085 19 6 11.3728 -6.8287 -0.0036 20 6 12.0906 -5.6339 -0.0047 21 7 13.4814 -5.6484 -0.0056 22 6 11.3965 -4.4222 -0.0051 23 17 12.2793 -2.9275 -0.0057 24 7 10.0829 -4.4005 -0.0050 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6804 0.8889 27 1 3.8745 -0.6800 -0.8911 28 1 3.3695 -3.3126 -0.0010 29 1 5.4634 -4.7561 -0.8922 30 1 5.4646 -4.7562 0.8877 31 1 9.4041 -7.6734 -0.0121 32 1 11.8837 -7.7802 -0.0036 33 1 13.9576 -6.4934 -0.0059 34 1 13.9751 -4.8134 -0.0059 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772058080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:12 Heat of formation + Delta-G solvation = -113.902613 kcal Electronic energy + Delta-G solvation = -22072.548425 eV Core-core repulsion = 18223.506187 eV Total energy + Delta-G solvation = -3849.042239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.02479 -41.09660 -40.27937 -37.78947 -37.51031 -36.50684 -36.19999 -34.46190 -33.16850 -31.43988 -30.55522 -28.74556 -25.67603 -24.79868 -24.04245 -22.48181 -21.72471 -19.84073 -19.33217 -18.70676 -18.27304 -18.12923 -17.85655 -17.56629 -16.93715 -16.60969 -16.38307 -15.97304 -15.81643 -15.71803 -14.92573 -14.60835 -14.50167 -14.32743 -14.00985 -13.77139 -13.63118 -13.08563 -12.85963 -12.71731 -12.61292 -12.42424 -12.08324 -11.93977 -11.90000 -11.66763 -11.00383 -10.92401 -10.84415 -10.73024 -10.03788 -8.95140 -8.40133 -6.47306 -0.53543 -0.00990 0.70903 1.18613 1.23212 1.33221 1.36095 1.48205 1.52919 2.28144 2.39040 2.54441 2.56062 2.95087 3.15109 3.45266 3.65750 3.84227 3.90129 4.04069 4.06417 4.12481 4.63387 4.74428 4.81526 5.00165 5.14060 5.18051 5.23937 5.40734 5.99845 6.06087 6.27439 6.52315 6.62136 6.67938 6.74590 7.12365 7.28676 8.74355 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.002542 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.859938 B =11014.241487 C =12208.654485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.028 3.972 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.232 3.768 10 N -0.696 5.696 11 C 0.503 3.497 12 O -0.578 6.578 13 C 0.055 3.945 14 O -0.334 6.334 15 C 0.529 3.471 16 O -0.514 6.514 17 C 0.006 3.994 18 C -0.032 4.032 19 C -0.147 4.147 20 C 0.238 3.762 21 N -0.825 5.825 22 C 0.072 3.928 23 Cl -0.032 7.032 24 N -0.420 5.420 25 H 0.273 0.727 26 H 0.016 0.984 27 H 0.015 0.985 28 H 0.414 0.586 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.177 0.823 32 H 0.203 0.797 33 H 0.427 0.573 34 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.970 -18.846 -0.027 36.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.109 3.891 10 N -0.348 5.348 11 C 0.289 3.711 12 O -0.458 6.458 13 C -0.022 4.022 14 O -0.249 6.249 15 C 0.374 3.626 16 O -0.403 6.403 17 C -0.132 4.132 18 C -0.053 4.053 19 C -0.177 4.177 20 C 0.122 3.878 21 N -0.363 5.363 22 C -0.104 4.104 23 Cl -0.004 7.004 24 N -0.133 5.133 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.250 0.750 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.195 0.805 32 H 0.220 0.780 33 H 0.261 0.739 34 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 30.745 -17.440 -0.027 35.347 hybrid contribution 0.054 0.398 -0.013 0.402 sum 30.800 -17.042 -0.039 35.200 Atomic orbital electron populations 1.69971 1.07612 1.28639 1.50569 1.25571 0.95545 1.02595 0.93592 0.85885 0.79262 0.79450 0.79483 1.18980 1.19731 1.18556 1.21261 0.89665 0.94777 1.52745 0.91858 1.19170 0.93551 0.80368 0.96036 1.45832 1.05736 1.10332 1.72876 1.20598 0.82745 0.91059 0.76680 1.90700 1.56275 1.47610 1.51171 1.22818 0.77867 0.94027 1.07441 1.86734 1.21905 1.32896 1.83334 1.20979 0.88583 0.80867 0.72191 1.90829 1.66084 1.35838 1.47570 1.19496 0.89213 0.89982 1.14460 1.22146 0.95540 0.97119 0.90498 1.21461 0.92358 0.97991 1.05850 1.18626 0.87079 0.92063 0.90066 1.42571 1.01117 1.13909 1.78673 1.21265 0.88999 0.87659 1.12474 1.98393 1.71774 1.33092 1.97096 1.66546 1.07336 1.32724 1.06707 0.91795 0.96651 0.96745 0.74984 0.85480 0.85507 0.80531 0.78016 0.73944 0.75617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.78 13.96 21.45 0.30 -55.48 16 2 C 0.03 1.57 5.47 84.66 0.46 2.03 16 3 Si 0.94 44.70 27.47 68.60 1.88 46.59 16 4 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 6 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 7 C -0.55 -30.36 9.83 25.60 0.25 -30.11 16 8 H 0.06 3.66 7.84 -2.91 -0.02 3.63 16 9 C 0.23 11.60 4.50 85.63 0.38 11.98 16 10 N -0.70 -28.38 5.55 -466.79 -2.59 -30.97 16 11 C 0.50 20.15 7.91 87.66 0.69 20.84 16 12 O -0.58 -28.71 16.50 15.77 0.26 -28.45 16 13 C 0.06 1.67 5.95 71.24 0.42 2.09 16 14 O -0.33 -11.53 9.56 -50.07 -0.48 -12.01 16 15 C 0.53 15.40 7.94 70.32 0.56 15.96 16 16 O -0.51 -14.69 16.10 19.92 0.32 -14.37 16 17 C 0.01 0.14 6.74 41.79 0.28 0.42 16 18 C -0.03 -0.46 9.62 22.59 0.22 -0.24 16 19 C -0.15 -1.14 10.02 22.55 0.23 -0.92 16 20 C 0.24 2.66 6.79 38.61 0.26 2.92 16 21 N -0.82 -2.71 9.02 -50.99 -0.46 -3.17 16 22 C 0.07 1.48 7.30 85.10 0.62 2.10 16 23 Cl -0.03 -0.62 27.76 -2.72 -0.08 -0.69 16 24 N -0.42 -11.67 10.08 -175.41 -1.77 -13.44 16 25 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 26 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 27 H 0.01 0.76 7.57 -2.39 -0.02 0.74 16 28 H 0.41 14.28 8.32 -92.71 -0.77 13.51 16 29 H 0.13 3.14 8.14 -2.39 -0.02 3.13 16 30 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 31 H 0.18 1.83 7.63 -2.91 -0.02 1.81 16 32 H 0.20 -0.38 8.06 -2.91 -0.02 -0.41 16 33 H 0.43 -1.52 8.85 -92.71 -0.82 -2.34 16 34 H 0.41 1.40 7.51 -92.71 -0.70 0.70 16 Total: -1.00 -81.48 326.36 0.64 -80.84 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -1.14 Total: 4.07 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 4.38 Total: 27.08 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -4.52 Total: -103.06 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: 0.10 Total: -54.83 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.88 Total: 46.59 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.69 kcal Total: -81.48 0.64 -80.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772058080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.058 kcal (2) G-P(sol) polarization free energy of solvation -81.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds