Wall clock time and date at job start Tue Mar 31 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99497 * 2 1 4 4 H 1.48497 * 109.47329 * 269.99953 * 3 2 1 5 5 H 1.48493 * 109.47226 * 30.00443 * 3 2 1 6 6 H 1.48507 * 109.46866 * 150.00430 * 3 2 1 7 7 C 1.37872 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99805 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00532 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99630 * 180.02562 * 11 10 9 14 14 O 1.45208 * 109.46875 * 180.02562 * 13 11 10 15 15 C 1.34718 * 116.99556 * 180.02562 * 14 13 11 16 16 O 1.21473 * 120.00327 * 359.97438 * 15 14 13 17 17 C 1.47678 * 119.99688 * 180.02562 * 15 14 13 18 18 C 1.39615 * 120.51258 * 359.97438 * 17 15 14 19 19 N 1.31664 * 120.72586 * 180.02562 * 18 17 15 20 20 C 1.31981 * 121.95678 * 359.97438 * 19 18 17 21 21 Cl 1.73594 * 119.52147 * 180.02562 * 20 19 18 22 22 C 1.39177 * 120.95945 * 0.02562 * 20 19 18 23 23 N 1.39810 * 120.42592 * 179.97438 * 22 20 19 24 24 C 1.38921 * 119.15209 * 359.97438 * 22 20 19 25 25 H 0.96994 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46572 * 60.00869 * 9 7 2 27 27 H 1.08996 * 109.47251 * 300.00851 * 9 7 2 28 28 H 0.96995 * 119.99715 * 0.02562 * 10 9 7 29 29 H 1.08997 * 109.47186 * 60.00353 * 13 11 10 30 30 H 1.08996 * 109.47440 * 300.00213 * 13 11 10 31 31 H 1.07988 * 119.63408 * 359.74635 * 18 17 15 32 32 H 0.96998 * 120.00074 * 180.02562 * 23 22 20 33 33 H 0.97003 * 120.00077 * 0.02562 * 23 22 20 34 34 H 1.08001 * 120.88334 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7334 -6.0287 -0.0005 14 8 2.0074 -7.2862 -0.0018 15 6 2.7412 -8.4160 -0.0010 16 8 3.9543 -8.3523 0.0004 17 6 2.0709 -9.7318 -0.0028 18 6 0.6773 -9.8175 -0.0049 19 7 0.0753 -10.9884 -0.0060 20 6 0.7517 -12.1217 -0.0058 21 17 -0.1069 -13.6304 -0.0080 22 6 2.1435 -12.1247 -0.0037 23 7 2.8489 -13.3318 -0.0029 24 6 2.8229 -10.9130 -0.0025 25 1 -0.4850 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 3.3593 -5.9710 0.8900 30 1 3.3607 -5.9708 -0.8899 31 1 0.0868 -8.9133 -0.0010 32 1 3.8188 -13.3268 -0.0011 33 1 2.3683 -14.1744 -0.0042 34 1 3.9025 -10.8827 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774996055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:15 Heat of formation + Delta-G solvation = -91.888607 kcal Electronic energy + Delta-G solvation = -21911.145796 eV Core-core repulsion = 18063.058157 eV Total energy + Delta-G solvation = -3848.087640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18682 -40.12693 -38.71817 -37.11200 -36.50734 -35.77766 -34.27762 -32.73201 -32.42353 -29.88794 -29.08794 -26.83441 -25.13771 -23.85402 -22.65419 -21.39131 -19.98971 -18.69420 -18.33520 -17.62062 -17.37469 -16.84076 -16.76392 -16.10026 -15.57940 -15.35068 -15.19882 -15.09583 -14.57332 -14.30431 -13.80748 -13.26806 -13.11109 -13.10200 -12.62029 -12.20004 -12.01709 -11.97106 -11.83460 -11.80213 -11.08861 -11.01954 -10.94447 -10.80352 -10.35978 -10.09567 -10.06242 -9.45679 -9.22514 -8.79900 -8.31714 -8.01488 -6.20760 -4.28362 -0.03796 0.80722 1.33494 2.15532 2.15691 3.08971 3.13370 3.22401 3.28018 3.28740 3.30922 3.82089 4.03925 4.27076 4.32228 4.42443 4.49714 4.72955 4.96122 5.14828 5.15693 5.17421 5.29326 5.52539 5.88761 6.10779 6.57662 7.01739 7.20023 7.25750 7.28272 7.44166 7.44887 7.59663 7.90523 8.46887 8.68845 8.93266 9.38083 10.89301 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.039359 B = 0.002062 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.224741 B =13577.826006 C =14268.604730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.706 5.706 11 C 0.499 3.501 12 O -0.532 6.532 13 C 0.050 3.950 14 O -0.320 6.320 15 C 0.516 3.484 16 O -0.501 6.501 17 C -0.120 4.120 18 C 0.125 3.875 19 N -0.441 5.441 20 C 0.127 3.873 21 Cl -0.027 7.027 22 C 0.176 3.824 23 N -0.861 5.861 24 C -0.082 4.082 25 H 0.267 0.733 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.393 0.607 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.187 0.813 32 H 0.407 0.593 33 H 0.406 0.594 34 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.728 -27.099 0.000 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.409 6.409 13 C -0.027 4.027 14 O -0.234 6.234 15 C 0.359 3.641 16 O -0.390 6.390 17 C -0.124 4.124 18 C -0.036 4.036 19 N -0.150 5.150 20 C -0.043 4.043 21 Cl 0.001 6.999 22 C 0.067 3.933 23 N -0.403 5.403 24 C -0.113 4.113 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.226 0.774 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.203 0.797 32 H 0.237 0.763 33 H 0.237 0.763 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.024 -27.207 0.003 27.866 hybrid contribution 2.040 0.653 -0.007 2.142 sum 8.064 -26.554 -0.004 27.752 Atomic orbital electron populations 1.69966 1.06108 1.27443 1.48602 1.24953 0.94938 0.99498 0.94612 0.86390 0.79594 0.82527 0.78248 1.20430 1.20982 1.19730 1.21201 0.93327 0.90295 1.53589 0.91763 1.19187 0.88143 0.81483 0.98090 1.46362 1.11555 1.05314 1.72370 1.19840 0.89091 0.83956 0.78903 1.90720 1.16231 1.84497 1.49495 1.22950 0.94468 0.80444 1.04880 1.86592 1.39768 1.13851 1.83215 1.20767 0.85438 0.84783 0.73140 1.90849 1.14588 1.87965 1.45624 1.19950 0.95063 0.90813 1.06596 1.23056 0.90782 0.95014 0.94707 1.66981 1.39967 0.97058 1.11002 1.21376 0.86956 0.89554 1.06426 1.98396 1.77955 1.26942 1.96605 1.18028 0.89921 0.88193 0.97134 1.42456 1.09387 1.04501 1.83925 1.21082 1.01278 0.88401 1.00494 0.92345 0.95192 0.95195 0.77404 0.88196 0.88203 0.79655 0.76348 0.76335 0.82374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.55 -14.39 9.28 -34.44 -0.32 -14.71 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.25 6.43 5.43 -5.19 -0.03 6.40 16 10 N -0.71 -14.06 5.55 -61.47 -0.34 -14.41 16 11 C 0.50 9.53 7.91 -10.98 -0.09 9.44 16 12 O -0.53 -12.47 16.50 -14.10 -0.23 -12.70 16 13 C 0.05 0.70 5.95 36.01 0.21 0.92 16 14 O -0.32 -4.65 9.03 -47.22 -0.43 -5.08 16 15 C 0.52 6.58 7.90 34.59 0.27 6.86 16 16 O -0.50 -6.94 16.21 -19.24 -0.31 -7.25 16 17 C -0.12 -1.30 5.89 -104.86 -0.62 -1.92 16 18 C 0.13 1.42 10.78 -17.11 -0.18 1.23 16 19 N -0.44 -5.17 10.31 -9.85 -0.10 -5.27 16 20 C 0.13 1.25 7.29 -17.14 -0.13 1.12 16 21 Cl -0.03 -0.23 27.74 -51.86 -1.44 -1.66 16 22 C 0.18 1.40 6.77 -83.62 -0.57 0.83 16 23 N -0.86 -3.92 9.05 32.49 0.29 -3.62 16 24 C -0.08 -0.71 9.58 -38.66 -0.37 -1.08 16 25 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.39 6.52 8.32 -40.82 -0.34 6.18 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.19 2.08 7.61 -52.49 -0.40 1.68 16 32 H 0.41 0.95 8.85 -40.82 -0.36 0.59 16 33 H 0.41 1.50 7.51 -40.82 -0.31 1.19 16 34 H 0.16 1.12 7.73 -52.49 -0.41 0.71 16 LS Contribution 329.26 15.07 4.96 4.96 Total: -1.00 -33.44 329.26 -6.82 -40.27 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -3.04 Total: 3.42 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -1.91 Total: 10.74 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.59 Total: -48.14 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.97 Total: -25.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.44 Total: -1.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.44 -6.82 -40.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774996055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.620 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds