Wall clock time and date at job start Tue Mar 31 2020 04:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99497 * 2 1 4 4 H 1.48497 * 109.47329 * 269.99953 * 3 2 1 5 5 H 1.48493 * 109.47226 * 30.00443 * 3 2 1 6 6 H 1.48507 * 109.46866 * 150.00430 * 3 2 1 7 7 C 1.37872 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00036 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47259 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99805 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00532 * 0.02562 * 11 10 9 13 13 C 1.50706 * 119.99630 * 180.02562 * 11 10 9 14 14 O 1.45208 * 109.46875 * 180.02562 * 13 11 10 15 15 C 1.34718 * 116.99556 * 180.02562 * 14 13 11 16 16 O 1.21473 * 120.00327 * 359.97438 * 15 14 13 17 17 C 1.47678 * 119.99688 * 180.02562 * 15 14 13 18 18 C 1.39615 * 120.51258 * 359.97438 * 17 15 14 19 19 N 1.31664 * 120.72586 * 180.02562 * 18 17 15 20 20 C 1.31981 * 121.95678 * 359.97438 * 19 18 17 21 21 Cl 1.73594 * 119.52147 * 180.02562 * 20 19 18 22 22 C 1.39177 * 120.95945 * 0.02562 * 20 19 18 23 23 N 1.39810 * 120.42592 * 179.97438 * 22 20 19 24 24 C 1.38921 * 119.15209 * 359.97438 * 22 20 19 25 25 H 0.96994 * 120.00365 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46572 * 60.00869 * 9 7 2 27 27 H 1.08996 * 109.47251 * 300.00851 * 9 7 2 28 28 H 0.96995 * 119.99715 * 0.02562 * 10 9 7 29 29 H 1.08997 * 109.47186 * 60.00353 * 13 11 10 30 30 H 1.08996 * 109.47440 * 300.00213 * 13 11 10 31 31 H 1.07988 * 119.63408 * 359.74635 * 18 17 15 32 32 H 0.96998 * 120.00074 * 180.02562 * 23 22 20 33 33 H 0.97003 * 120.00077 * 0.02562 * 23 22 20 34 34 H 1.08001 * 120.88334 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5616 -5.1050 -0.0020 13 6 2.7334 -6.0287 -0.0005 14 8 2.0074 -7.2862 -0.0018 15 6 2.7412 -8.4160 -0.0010 16 8 3.9543 -8.3523 0.0004 17 6 2.0709 -9.7318 -0.0028 18 6 0.6773 -9.8175 -0.0049 19 7 0.0753 -10.9884 -0.0060 20 6 0.7517 -12.1217 -0.0058 21 17 -0.1069 -13.6304 -0.0080 22 6 2.1435 -12.1247 -0.0037 23 7 2.8489 -13.3318 -0.0029 24 6 2.8229 -10.9130 -0.0025 25 1 -0.4850 0.8400 0.0004 26 1 0.6243 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 3.1568 -3.4353 -0.0002 29 1 3.3593 -5.9710 0.8900 30 1 3.3607 -5.9708 -0.8899 31 1 0.0868 -8.9133 -0.0010 32 1 3.8188 -13.3268 -0.0011 33 1 2.3683 -14.1744 -0.0042 34 1 3.9025 -10.8827 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774996055.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:14 Heat of formation + Delta-G solvation = -116.964443 kcal Electronic energy + Delta-G solvation = -21912.233166 eV Core-core repulsion = 18063.058157 eV Total energy + Delta-G solvation = -3849.175009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.09063 -41.10759 -40.24658 -37.82825 -37.59879 -36.39743 -36.15666 -34.39851 -33.52306 -30.94855 -30.19361 -28.53905 -26.09840 -24.60353 -24.53159 -22.36197 -21.62553 -19.63924 -19.30392 -18.75517 -18.33310 -17.93618 -17.86261 -17.43771 -16.94158 -16.68249 -16.28329 -16.10250 -15.91138 -15.74635 -14.74207 -14.49663 -14.46803 -14.10356 -13.99442 -13.81085 -13.66191 -12.92377 -12.85900 -12.70687 -12.63562 -12.54610 -12.21704 -12.05651 -11.93376 -11.48112 -10.91083 -10.87188 -10.82314 -10.80140 -9.90080 -8.90166 -8.27967 -6.44372 -0.83740 0.08733 0.62705 1.10115 1.22804 1.45800 1.47424 1.58720 1.59149 2.32702 2.48429 2.49248 2.62090 3.07361 3.23539 3.47601 3.61901 3.70102 3.72548 4.04550 4.06595 4.09400 4.34123 4.81999 5.04713 5.10589 5.14000 5.24637 5.44296 5.65068 5.84209 6.07941 6.38866 6.53745 6.65159 6.71278 6.80731 7.22794 7.38837 8.84034 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.039359 B = 0.002062 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.224741 B =13577.826006 C =14268.604730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.255 1.255 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.062 3.938 14 O -0.338 6.338 15 C 0.523 3.477 16 O -0.510 6.510 17 C -0.126 4.126 18 C 0.111 3.889 19 N -0.464 5.464 20 C 0.110 3.890 21 Cl -0.017 7.017 22 C 0.191 3.809 23 N -0.842 5.842 24 C -0.075 4.075 25 H 0.269 0.731 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.413 0.587 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.176 0.824 32 H 0.421 0.579 33 H 0.413 0.587 34 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.827 -28.201 0.008 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.284 3.716 12 O -0.462 6.462 13 C -0.015 4.015 14 O -0.253 6.253 15 C 0.367 3.633 16 O -0.400 6.400 17 C -0.131 4.131 18 C -0.050 4.050 19 N -0.173 5.173 20 C -0.060 4.060 21 Cl 0.011 6.989 22 C 0.079 3.921 23 N -0.384 5.384 24 C -0.106 4.106 25 H 0.077 0.923 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.249 0.751 29 H 0.148 0.852 30 H 0.147 0.853 31 H 0.193 0.807 32 H 0.254 0.746 33 H 0.245 0.755 34 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 9.207 -28.374 0.012 29.830 hybrid contribution 1.051 0.805 -0.011 1.324 sum 10.258 -27.568 0.001 29.415 Atomic orbital electron populations 1.70129 1.08235 1.28584 1.49914 1.26053 0.95772 1.03883 0.93936 0.85158 0.78501 0.77024 0.78537 1.19686 1.21158 1.17860 1.21618 0.94454 0.90393 1.52887 0.89515 1.18621 0.88585 0.83806 0.94606 1.46022 1.11726 1.04705 1.72573 1.20689 0.89325 0.84707 0.76835 1.90700 1.18911 1.85268 1.51360 1.22831 0.92508 0.78458 1.07681 1.86587 1.40709 1.14422 1.83630 1.20931 0.85252 0.84619 0.72481 1.90837 1.14779 1.88002 1.46355 1.19865 0.94839 0.90603 1.07744 1.22878 0.91153 0.94822 0.96145 1.66912 1.40921 0.97675 1.11824 1.21619 0.87929 0.89486 1.06937 1.98394 1.77974 1.25941 1.96553 1.17977 0.89307 0.89107 0.95660 1.42472 1.10208 1.03624 1.82081 1.21263 1.02080 0.87677 0.99548 0.92251 0.98966 0.98959 0.75057 0.85247 0.85252 0.80746 0.74646 0.75523 0.80317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.98 41.54 29.54 68.60 2.03 43.57 16 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.56 -29.32 9.28 25.60 0.24 -29.09 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.15 5.43 85.63 0.46 14.62 16 10 N -0.70 -27.88 5.55 -466.79 -2.59 -30.47 16 11 C 0.50 19.15 7.91 87.66 0.69 19.85 16 12 O -0.58 -28.43 16.50 15.77 0.26 -28.17 16 13 C 0.06 1.63 5.95 71.24 0.42 2.06 16 14 O -0.34 -9.63 9.03 -49.89 -0.45 -10.08 16 15 C 0.52 12.67 7.90 70.32 0.56 13.22 16 16 O -0.51 -12.90 16.21 19.92 0.32 -12.57 16 17 C -0.13 -2.63 5.89 -20.02 -0.12 -2.75 16 18 C 0.11 2.57 10.78 85.05 0.92 3.49 16 19 N -0.46 -10.93 10.31 -185.09 -1.91 -12.84 16 20 C 0.11 2.06 7.29 84.90 0.62 2.68 16 21 Cl -0.02 -0.26 27.74 -2.72 -0.08 -0.34 16 22 C 0.19 2.63 6.77 38.26 0.26 2.89 16 23 N -0.84 -5.20 9.05 -51.12 -0.46 -5.67 16 24 C -0.08 -1.14 9.58 22.87 0.22 -0.92 16 25 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 26 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.41 13.05 8.32 -92.71 -0.77 12.28 16 29 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.18 4.25 7.61 -2.92 -0.02 4.23 16 32 H 0.42 0.50 8.85 -92.71 -0.82 -0.32 16 33 H 0.41 1.89 7.51 -92.71 -0.70 1.20 16 34 H 0.18 1.93 7.73 -2.91 -0.02 1.91 16 Total: -1.00 -74.97 329.26 1.06 -73.91 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -1.08 Total: 11.00 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 4.73 Total: 26.68 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -4.68 Total: -104.01 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: 0.13 Total: -50.82 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -74.97 1.06 -73.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774996055.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.050 kcal (2) G-P(sol) polarization free energy of solvation -74.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds