Wall clock time and date at job start Tue Mar 31 2020 04:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35739 * 116.99869 * 2 1 4 4 C 1.38894 * 119.59297 * 180.02562 * 3 2 1 5 5 C 1.38340 * 119.21740 * 179.97438 * 4 3 2 6 6 C 1.39366 * 118.43872 * 359.73112 * 5 4 3 7 7 N 1.39939 * 120.44054 * 180.26629 * 6 5 4 8 8 C 1.34777 * 119.99901 * 24.62588 * 7 6 5 9 9 O 1.21386 * 120.00107 * 5.58078 * 8 7 6 10 10 C 1.49334 * 120.00264 * 185.58097 * 8 7 6 11 11 O 1.21366 * 119.99614 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00264 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99909 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46690 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00602 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99887 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46895 * 60.00203 * 18 16 14 20 20 H 1.48492 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47255 * 300.00242 * 18 16 14 22 22 C 1.38900 * 119.12602 * 0.53082 * 6 5 4 23 23 Cl 1.73601 * 119.64875 * 179.72913 * 22 6 5 24 24 N 1.31994 * 120.69948 * 359.45959 * 22 6 5 25 25 H 1.09009 * 109.47089 * 59.99543 * 1 2 3 26 26 H 1.08989 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46985 * 300.00243 * 1 2 3 28 28 H 1.07997 * 120.39210 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.78118 * 180.02562 * 5 4 3 30 30 H 0.97005 * 120.00428 * 204.62762 * 7 6 5 31 31 H 0.97003 * 119.99843 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47363 * 299.99817 * 13 12 10 33 33 H 1.08992 * 109.47344 * 60.00342 * 13 12 10 34 34 H 0.96999 * 119.99583 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4327 1.2723 -0.0005 5 6 4.0527 2.5090 -0.0011 6 6 3.2545 3.6515 -0.0068 7 7 3.8376 4.9236 -0.0132 8 6 5.0829 5.0917 -0.5004 9 8 5.6598 4.1618 -1.0257 10 6 5.7531 6.4220 -0.3940 11 8 5.1761 7.3519 0.1308 12 7 6.9986 6.5900 -0.8808 13 6 7.6558 7.8951 -0.7769 14 6 9.0291 7.8163 -1.3925 15 1 9.3773 6.8872 -1.8189 16 6 9.8406 8.9309 -1.4124 17 7 9.4164 10.0626 -0.8936 18 14 11.5431 8.8332 -2.1748 19 1 11.4238 8.4507 -3.6049 20 1 12.2093 10.1561 -2.0697 21 1 12.3499 7.8148 -1.4557 22 6 1.8727 3.5109 -0.0005 23 17 0.8656 4.9249 -0.0004 24 7 1.3172 2.3136 0.0000 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0207 0.3664 -0.0005 29 1 5.1298 2.5874 -0.0019 30 1 3.3455 5.6845 0.3331 31 1 7.4596 5.8468 -1.3005 32 1 7.0639 8.6430 -1.3045 33 1 7.7434 8.1753 0.2728 34 1 9.9872 10.8467 -0.9079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787590529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:35 Heat of formation + Delta-G solvation = -69.603083 kcal Electronic energy + Delta-G solvation = -22453.579497 eV Core-core repulsion = 18606.458230 eV Total energy + Delta-G solvation = -3847.121267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.45507 -40.32504 -38.66454 -37.90790 -36.87837 -35.46556 -34.32196 -32.62104 -32.43627 -30.10498 -27.90733 -27.50354 -25.04675 -24.08213 -23.26889 -21.89911 -20.15091 -19.18275 -18.73094 -17.70541 -17.42079 -16.53441 -16.40086 -15.88455 -15.71509 -15.36368 -15.08689 -14.79010 -14.46700 -14.36687 -13.96657 -13.55793 -13.43402 -13.11787 -12.32390 -12.30362 -12.10262 -12.01492 -11.67702 -11.59939 -11.43104 -11.07697 -10.93801 -10.82130 -10.40832 -10.30792 -9.92088 -9.55002 -9.23389 -8.88156 -8.28093 -8.17618 -6.26040 -4.33892 0.46293 0.75303 1.37275 1.66840 2.33314 2.76194 3.19974 3.22322 3.27226 3.28939 3.52843 3.82783 4.01258 4.27135 4.37103 4.65713 4.79410 4.93633 4.98628 4.98981 5.10730 5.20688 5.35658 5.48117 5.76586 6.11504 6.71842 6.80309 6.99904 7.06037 7.20431 7.30301 7.46054 7.63431 7.81665 8.27716 8.46968 8.76203 9.32544 10.83872 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.002625 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.366297 B =10663.020925 C =11518.080720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.303 6.303 3 C 0.318 3.682 4 C -0.158 4.158 5 C -0.042 4.042 6 C 0.091 3.909 7 N -0.640 5.640 8 C 0.512 3.488 9 O -0.502 6.502 10 C 0.492 3.508 11 O -0.531 6.531 12 N -0.668 5.668 13 C 0.246 3.754 14 C -0.548 4.548 15 H 0.066 0.934 16 C 0.066 3.934 17 N -0.885 5.885 18 Si 0.907 3.093 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.181 3.819 23 Cl -0.017 7.017 24 N -0.514 5.514 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.156 0.844 29 H 0.176 0.824 30 H 0.427 0.573 31 H 0.405 0.595 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -17.564 2.632 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.210 6.210 3 C 0.138 3.862 4 C -0.179 4.179 5 C -0.069 4.069 6 C -0.008 4.008 7 N -0.287 5.287 8 C 0.296 3.704 9 O -0.376 6.376 10 C 0.270 3.730 11 O -0.410 6.410 12 N -0.317 5.317 13 C 0.127 3.873 14 C -0.587 4.587 15 H 0.084 0.916 16 C -0.139 4.139 17 N -0.521 5.521 18 Si 0.734 3.266 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.016 3.984 23 Cl 0.011 6.989 24 N -0.240 5.240 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.079 0.921 28 H 0.173 0.827 29 H 0.193 0.807 30 H 0.267 0.733 31 H 0.240 0.760 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.902 -17.479 2.664 24.460 hybrid contribution 1.197 0.386 -0.428 1.328 sum -15.705 -17.093 2.236 23.320 Atomic orbital electron populations 1.22907 0.76941 1.03155 1.02694 1.86278 1.23114 1.23588 1.87983 1.19568 0.89152 0.83622 0.93880 1.21139 0.91517 0.99583 1.05690 1.21778 1.02455 0.88816 0.93849 1.18152 0.90324 0.86846 1.05513 1.43204 1.16441 1.08654 1.60445 1.21026 0.81314 0.90606 0.77473 1.90691 1.63955 1.42470 1.40462 1.19528 0.84085 0.87079 0.82292 1.90761 1.64576 1.41403 1.44225 1.46433 1.13396 1.17072 1.54770 1.19376 0.91934 0.77617 0.98409 1.21150 0.99277 0.97642 1.40596 0.91562 1.24942 0.98975 0.94906 0.95029 1.69955 1.37467 1.01062 1.43665 0.86412 0.83007 0.77434 0.79740 1.19940 1.21022 1.19940 1.20850 0.86654 0.88386 1.02534 1.98432 1.69721 1.34323 1.96425 1.66456 1.40651 0.97218 1.19672 0.92131 0.88412 0.92123 0.82660 0.80703 0.73289 0.76011 0.94594 0.94578 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.38 101.05 1.05 1.32 16 2 O -0.30 -2.97 10.48 -18.92 -0.20 -3.17 16 3 C 0.32 3.50 7.49 -17.13 -0.13 3.37 16 4 C -0.16 -1.58 10.03 -39.30 -0.39 -1.97 16 5 C -0.04 -0.48 8.82 -39.12 -0.34 -0.82 16 6 C 0.09 1.14 6.45 -83.49 -0.54 0.60 16 7 N -0.64 -8.54 5.19 -10.15 -0.05 -8.60 16 8 C 0.51 7.99 7.71 -11.64 -0.09 7.90 16 9 O -0.50 -8.03 13.67 5.47 0.07 -7.95 16 10 C 0.49 9.29 7.89 -11.64 -0.09 9.20 16 11 O -0.53 -11.22 16.48 5.48 0.09 -11.13 16 12 N -0.67 -13.61 5.54 -61.95 -0.34 -13.95 16 13 C 0.25 6.16 5.43 -5.19 -0.03 6.13 16 14 C -0.55 -14.33 9.28 -34.44 -0.32 -14.65 16 15 H 0.07 1.63 7.60 -52.49 -0.40 1.23 16 16 C 0.07 1.76 5.46 -17.81 -0.10 1.66 16 17 N -0.88 -25.05 13.29 55.43 0.74 -24.31 16 18 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 22 C 0.18 2.20 7.29 -17.24 -0.13 2.07 16 23 Cl -0.02 -0.19 27.93 -51.86 -1.45 -1.64 16 24 N -0.51 -6.11 9.18 -10.27 -0.09 -6.21 16 25 H 0.06 0.45 8.10 -51.92 -0.42 0.02 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 28 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.18 2.03 5.89 -52.49 -0.31 1.72 16 30 H 0.43 5.43 7.23 -40.82 -0.30 5.13 16 31 H 0.40 7.54 7.79 -40.82 -0.32 7.22 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -29.70 324.33 -5.47 -35.17 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -2.99 Total: 6.81 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: -1.11 Total: 14.80 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.25 Total: -53.07 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.03 Total: -22.25 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.45 Total: -1.64 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.70 -5.47 -35.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787590529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.433 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds