Wall clock time and date at job start Tue Mar 31 2020 04:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35739 * 116.99869 * 2 1 4 4 C 1.38894 * 119.59297 * 180.02562 * 3 2 1 5 5 C 1.38340 * 119.21740 * 179.97438 * 4 3 2 6 6 C 1.39366 * 118.43872 * 359.73112 * 5 4 3 7 7 N 1.39939 * 120.44054 * 180.26629 * 6 5 4 8 8 C 1.34777 * 119.99901 * 24.62588 * 7 6 5 9 9 O 1.21386 * 120.00107 * 5.58078 * 8 7 6 10 10 C 1.49334 * 120.00264 * 185.58097 * 8 7 6 11 11 O 1.21366 * 119.99614 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00264 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99909 * 179.97438 * 12 10 8 14 14 C 1.50703 * 109.46690 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00602 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99887 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99824 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00215 * 179.97438 * 16 14 13 19 19 H 1.48510 * 109.46895 * 60.00203 * 18 16 14 20 20 H 1.48492 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47255 * 300.00242 * 18 16 14 22 22 C 1.38900 * 119.12602 * 0.53082 * 6 5 4 23 23 Cl 1.73601 * 119.64875 * 179.72913 * 22 6 5 24 24 N 1.31994 * 120.69948 * 359.45959 * 22 6 5 25 25 H 1.09009 * 109.47089 * 59.99543 * 1 2 3 26 26 H 1.08989 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46985 * 300.00243 * 1 2 3 28 28 H 1.07997 * 120.39210 * 359.97438 * 4 3 2 29 29 H 1.08002 * 120.78118 * 180.02562 * 5 4 3 30 30 H 0.97005 * 120.00428 * 204.62762 * 7 6 5 31 31 H 0.97003 * 119.99843 * 0.02562 * 12 10 8 32 32 H 1.09002 * 109.47363 * 299.99817 * 13 12 10 33 33 H 1.08992 * 109.47344 * 60.00342 * 13 12 10 34 34 H 0.96999 * 119.99583 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 3.4327 1.2723 -0.0005 5 6 4.0527 2.5090 -0.0011 6 6 3.2545 3.6515 -0.0068 7 7 3.8376 4.9236 -0.0132 8 6 5.0829 5.0917 -0.5004 9 8 5.6598 4.1618 -1.0257 10 6 5.7531 6.4220 -0.3940 11 8 5.1761 7.3519 0.1308 12 7 6.9986 6.5900 -0.8808 13 6 7.6558 7.8951 -0.7769 14 6 9.0291 7.8163 -1.3925 15 1 9.3773 6.8872 -1.8189 16 6 9.8406 8.9309 -1.4124 17 7 9.4164 10.0626 -0.8936 18 14 11.5431 8.8332 -2.1748 19 1 11.4238 8.4507 -3.6049 20 1 12.2093 10.1561 -2.0697 21 1 12.3499 7.8148 -1.4557 22 6 1.8727 3.5109 -0.0005 23 17 0.8656 4.9249 -0.0004 24 7 1.3172 2.3136 0.0000 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.0207 0.3664 -0.0005 29 1 5.1298 2.5874 -0.0019 30 1 3.3455 5.6845 0.3331 31 1 7.4596 5.8468 -1.3005 32 1 7.0639 8.6430 -1.3045 33 1 7.7434 8.1753 0.2728 34 1 9.9872 10.8467 -0.9079 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787590529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:34 Heat of formation + Delta-G solvation = -93.168020 kcal Electronic energy + Delta-G solvation = -22454.601349 eV Core-core repulsion = 18606.458230 eV Total energy + Delta-G solvation = -3848.143119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.50757 -41.46748 -39.94032 -38.98783 -37.76778 -36.78060 -35.94365 -34.36784 -33.50413 -31.06362 -29.70703 -28.29682 -26.48392 -24.95110 -24.68801 -23.35111 -21.55096 -20.49944 -19.62687 -18.86438 -18.56249 -18.06641 -17.36341 -17.30113 -17.05533 -16.86485 -16.26066 -15.99319 -15.64641 -15.52788 -15.03516 -14.97015 -14.61193 -14.16468 -14.04984 -13.91521 -13.11298 -13.04344 -12.93969 -12.71483 -12.69195 -12.62630 -12.47427 -12.21802 -11.66688 -11.54372 -11.28633 -10.91589 -10.82480 -10.59325 -10.06211 -9.20746 -8.29974 -6.45938 -0.49961 -0.16323 0.37419 0.47870 1.06379 1.46222 1.48727 1.57126 1.97840 2.01045 2.35401 2.39736 2.54459 3.05667 3.15302 3.34785 3.46637 3.79546 3.98701 4.42222 4.43111 4.43304 4.59683 4.78128 4.86244 4.99488 5.17056 5.18926 5.24652 5.49427 5.70617 5.79790 5.96568 6.28945 6.35260 6.56503 6.65564 6.98416 7.26932 8.81281 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.002625 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.366297 B =10663.020925 C =11518.080720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.316 3.684 4 C -0.148 4.148 5 C -0.043 4.043 6 C 0.073 3.927 7 N -0.627 5.627 8 C 0.527 3.473 9 O -0.503 6.503 10 C 0.495 3.505 11 O -0.555 6.555 12 N -0.668 5.668 13 C 0.263 3.737 14 C -0.561 4.561 15 H 0.082 0.918 16 C 0.010 3.990 17 N -0.925 5.925 18 Si 0.981 3.019 19 H -0.264 1.264 20 H -0.285 1.285 21 H -0.263 1.263 22 C 0.179 3.821 23 Cl -0.014 7.014 24 N -0.523 5.523 25 H 0.056 0.944 26 H 0.128 0.872 27 H 0.058 0.942 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.430 0.570 31 H 0.415 0.585 32 H 0.006 0.994 33 H 0.007 0.993 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 -19.934 2.102 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.135 3.865 4 C -0.168 4.168 5 C -0.070 4.070 6 C -0.025 4.025 7 N -0.275 5.275 8 C 0.309 3.691 9 O -0.378 6.378 10 C 0.274 3.726 11 O -0.435 6.435 12 N -0.319 5.319 13 C 0.141 3.859 14 C -0.599 4.599 15 H 0.100 0.900 16 C -0.190 4.190 17 N -0.563 5.563 18 Si 0.804 3.196 19 H -0.189 1.189 20 H -0.210 1.210 21 H -0.188 1.188 22 C 0.013 3.987 23 Cl 0.014 6.986 24 N -0.250 5.250 25 H 0.075 0.925 26 H 0.146 0.854 27 H 0.077 0.923 28 H 0.201 0.799 29 H 0.192 0.808 30 H 0.270 0.730 31 H 0.252 0.748 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.783 -19.907 2.137 26.125 hybrid contribution 0.969 1.018 -0.215 1.422 sum -15.814 -18.889 1.921 24.710 Atomic orbital electron populations 1.23142 0.75505 1.05102 1.02401 1.86290 1.24532 1.22787 1.87582 1.19859 0.89714 0.83806 0.93086 1.21400 0.91376 1.00026 1.04034 1.21838 1.02398 0.89043 0.93727 1.18241 0.90655 0.86376 1.07261 1.42995 1.15415 1.09465 1.59624 1.20078 0.82004 0.88751 0.78241 1.90701 1.64299 1.41829 1.40956 1.20032 0.83393 0.88296 0.80842 1.90746 1.65020 1.42874 1.44846 1.46126 1.14163 1.15837 1.55746 1.18848 0.91909 0.79077 0.96067 1.21542 0.99599 0.98368 1.40390 0.90017 1.25955 1.03327 0.94411 0.95345 1.70095 1.39197 1.01945 1.45102 0.85255 0.77644 0.77528 0.79125 1.18895 1.20997 1.18792 1.20875 0.86587 0.88729 1.02476 1.98432 1.69590 1.34141 1.96400 1.66487 1.40966 0.97349 1.20150 0.92506 0.85429 0.92305 0.79872 0.80759 0.73011 0.74794 0.97645 0.97518 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.38 113.37 1.18 1.57 16 2 O -0.31 -5.25 10.48 -90.62 -0.95 -6.20 16 3 C 0.32 6.28 7.49 84.79 0.63 6.92 16 4 C -0.15 -2.58 10.03 22.45 0.23 -2.36 16 5 C -0.04 -0.91 8.82 22.57 0.20 -0.71 16 6 C 0.07 1.74 6.45 38.28 0.25 1.99 16 7 N -0.63 -16.34 5.19 -304.37 -1.58 -17.92 16 8 C 0.53 16.10 7.71 87.23 0.67 16.77 16 9 O -0.50 -15.45 13.67 -3.36 -0.05 -15.50 16 10 C 0.49 18.86 7.89 87.23 0.69 19.55 16 11 O -0.56 -24.03 16.48 -3.30 -0.05 -24.08 16 12 N -0.67 -27.59 5.54 -468.27 -2.59 -30.18 16 13 C 0.26 13.55 5.43 85.63 0.46 14.02 16 14 C -0.56 -29.46 9.28 25.60 0.24 -29.22 16 15 H 0.08 3.94 7.60 -2.91 -0.02 3.92 16 16 C 0.01 0.54 5.46 84.66 0.46 1.00 16 17 N -0.93 -53.44 13.29 21.45 0.28 -53.16 16 18 Si 0.98 41.25 29.54 68.60 2.03 43.28 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 22 C 0.18 4.13 7.29 84.83 0.62 4.75 16 23 Cl -0.01 -0.30 27.93 -2.72 -0.08 -0.38 16 24 N -0.52 -11.67 9.18 -299.24 -2.75 -14.42 16 25 H 0.06 0.74 8.10 -2.38 -0.02 0.72 16 26 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.74 8.10 -2.38 -0.02 0.72 16 28 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 29 H 0.18 3.73 5.89 -2.91 -0.02 3.72 16 30 H 0.43 10.78 7.23 -92.70 -0.67 10.11 16 31 H 0.42 15.31 7.79 -92.71 -0.72 14.58 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -63.77 324.33 -0.31 -64.08 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.20 Total: 20.21 kcal Atomic # 6 Polarization: 28.65 SS G_CDS: 5.63 Total: 34.27 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -6.64 Total: -115.68 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -1.05 Total: -45.78 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -63.77 -0.31 -64.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787590529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.089 kcal (2) G-P(sol) polarization free energy of solvation -63.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds