Wall clock time and date at job start Tue Mar 31 2020 04:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35737 * 117.00211 * 2 1 4 4 C 1.39149 * 120.38635 * 359.97374 * 3 2 1 5 5 C 1.38378 * 118.46135 * 179.75713 * 4 3 2 6 6 C 1.39413 * 119.16194 * 0.50480 * 5 4 3 7 7 C 1.47913 * 119.65256 * 179.75638 * 6 5 4 8 8 O 1.21543 * 119.99956 * 359.73025 * 7 6 5 9 9 N 1.34777 * 119.99748 * 179.72726 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72370 * 9 7 6 11 11 C 1.50703 * 109.47138 * 180.28062 * 10 9 7 12 12 O 1.21293 * 120.00086 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00069 * 180.02562 * 11 10 9 14 14 C 1.37097 * 120.00084 * 179.97438 * 13 11 10 15 15 H 1.08001 * 120.00027 * 359.97438 * 14 13 11 16 16 C 1.38954 * 119.99944 * 179.97438 * 14 13 11 17 17 N 1.31416 * 119.99793 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00192 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47136 * 89.99746 * 18 16 14 20 20 H 1.48501 * 109.46721 * 209.99776 * 18 16 14 21 21 H 1.48504 * 109.46915 * 329.99667 * 18 16 14 22 22 N 1.32858 * 120.69511 * 359.48070 * 6 5 4 23 23 C 1.31458 * 121.67254 * 0.27879 * 22 6 5 24 24 Cl 1.73592 * 119.60814 * 180.02562 * 23 22 6 25 25 H 1.09000 * 109.47282 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47177 * 300.00600 * 1 2 3 27 27 H 1.09005 * 109.46553 * 60.00269 * 1 2 3 28 28 H 1.07997 * 120.76450 * 0.03977 * 4 3 2 29 29 H 1.07997 * 120.41723 * 180.28790 * 5 4 3 30 30 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 31 31 H 1.09009 * 109.47454 * 300.27637 * 10 9 7 32 32 H 1.08998 * 109.47492 * 60.27932 * 10 9 7 33 33 H 0.97002 * 120.00050 * 359.97438 * 13 11 10 34 34 H 0.96997 * 120.00181 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2094 0.0000 4 6 1.2954 2.3815 -0.0006 5 6 1.9647 3.5926 0.0046 6 6 3.3588 3.5984 -0.0005 7 6 4.0853 4.8868 -0.0006 8 8 3.4669 5.9332 -0.0010 9 7 5.4330 4.9005 0.0000 10 6 6.1525 6.1766 -0.0061 11 6 7.6369 5.9163 -0.0110 12 8 8.0529 4.7770 -0.0091 13 7 8.5022 6.9496 -0.0165 14 6 9.8526 6.7128 -0.0205 15 1 10.2230 5.6983 -0.0188 16 6 10.7447 7.7782 -0.0267 17 7 12.0391 7.5512 -0.0300 18 14 10.1042 9.5329 -0.0290 19 1 9.9397 10.0016 1.3705 20 1 11.0708 10.4117 -0.7350 21 1 8.7928 9.5802 -0.7243 22 7 4.0418 2.4588 0.0000 23 6 3.4369 1.2916 0.0000 24 17 4.3822 -0.1643 0.0015 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.2160 2.3467 -0.0003 29 1 1.4141 4.5217 0.0090 30 1 5.9266 4.0655 0.0001 31 1 5.8801 6.7432 -0.8967 32 1 5.8868 6.7479 0.8833 33 1 8.1696 7.8608 -0.0177 34 1 12.6619 8.2948 -0.0340 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804821547.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:37 Heat of formation + Delta-G solvation = -95.687723 kcal Electronic energy + Delta-G solvation = -22355.155574 eV Core-core repulsion = 18506.903193 eV Total energy + Delta-G solvation = -3848.252382 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.066 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.11849 -40.94179 -40.08378 -39.09258 -37.67307 -36.32821 -35.45317 -33.84661 -33.46786 -32.13182 -29.65300 -28.50070 -26.46448 -24.83937 -24.67863 -21.91658 -21.48775 -20.64289 -19.68270 -19.15206 -18.54895 -17.56940 -17.19901 -16.99526 -16.80382 -16.71407 -16.42438 -15.79598 -15.62932 -15.45933 -14.96489 -14.92497 -14.72809 -14.34424 -14.04337 -13.88943 -13.68226 -12.96899 -12.77766 -12.52182 -12.45229 -12.44384 -12.36937 -11.99395 -11.69030 -11.58157 -10.96793 -10.91855 -10.66705 -10.35567 -10.26959 -9.59547 -8.45198 -6.07714 -0.59551 -0.18726 0.67397 1.31486 1.34686 1.44955 1.46358 1.78899 1.82046 1.97143 2.21364 2.52166 2.81457 3.01798 3.10611 3.47322 3.51867 3.72068 3.96887 4.03401 4.33352 4.35328 4.39550 4.42332 4.63211 4.66995 4.82804 4.96983 5.14314 5.48276 5.87794 5.91323 6.17457 6.46719 6.48762 6.78282 6.95387 7.28458 7.78747 8.71455 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.002712 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.731253 B =10320.523268 C =11347.787014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.307 6.307 3 C 0.130 3.870 4 C -0.145 4.145 5 C -0.051 4.051 6 C 0.033 3.967 7 C 0.578 3.422 8 O -0.555 6.555 9 N -0.697 5.697 10 C 0.116 3.884 11 C 0.442 3.558 12 O -0.615 6.615 13 N -0.576 5.576 14 C -0.333 4.333 15 H 0.060 0.940 16 C -0.010 4.010 17 N -0.927 5.927 18 Si 0.962 3.038 19 H -0.256 1.256 20 H -0.273 1.273 21 H -0.230 1.230 22 N -0.439 5.439 23 C 0.121 3.879 24 Cl -0.021 7.021 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.205 0.795 29 H 0.180 0.820 30 H 0.416 0.584 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.393 0.607 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.483 -9.142 0.045 31.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.217 6.217 3 C 0.079 3.921 4 C -0.171 4.171 5 C -0.072 4.072 6 C -0.105 4.105 7 C 0.364 3.636 8 O -0.434 6.434 9 N -0.350 5.350 10 C -0.012 4.012 11 C 0.229 3.771 12 O -0.501 6.501 13 N -0.216 5.216 14 C -0.462 4.462 15 H 0.078 0.922 16 C -0.210 4.210 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.180 1.180 20 H -0.198 1.198 21 H -0.153 1.153 22 N -0.153 5.153 23 C -0.048 4.048 24 Cl 0.007 6.993 25 H 0.143 0.857 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.221 0.779 29 H 0.197 0.803 30 H 0.255 0.745 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.229 0.771 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.322 -9.349 0.047 30.776 hybrid contribution 0.222 0.275 -0.005 0.354 sum -29.100 -9.074 0.042 30.481 Atomic orbital electron populations 1.23682 0.74569 1.06826 1.03602 1.86183 1.24878 1.24207 1.86475 1.19829 0.90523 0.87547 0.94205 1.22125 1.03263 0.88879 1.02809 1.22263 0.92122 1.01128 0.91686 1.20761 0.92702 0.89807 1.07234 1.17828 0.81562 0.87864 0.76375 1.90760 1.67869 1.32513 1.52263 1.45680 1.06252 1.10510 1.72565 1.21027 0.87296 0.86918 1.05911 1.20546 0.88934 0.85130 0.82473 1.90562 1.79936 1.23343 1.56247 1.41891 1.05504 1.07929 1.66287 1.19025 0.80911 0.95344 1.50874 0.92158 1.26122 0.94913 1.04303 0.95630 1.69790 1.02883 1.34741 1.49229 0.85404 0.80028 0.76291 0.80122 1.17988 1.19815 1.15338 1.66788 1.41441 0.97467 1.09591 1.21054 0.87353 0.88845 1.07552 1.98416 1.73480 1.30722 1.96687 0.85711 0.90176 0.90172 0.77862 0.80308 0.74502 0.86915 0.86807 0.77064 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.02 9.83 113.37 1.11 1.14 16 2 O -0.31 -4.20 9.96 -90.61 -0.90 -5.10 16 3 C 0.13 2.24 6.71 22.77 0.15 2.39 16 4 C -0.15 -1.69 9.12 22.52 0.21 -1.49 16 5 C -0.05 -0.88 9.62 22.59 0.22 -0.66 16 6 C 0.03 0.85 6.74 41.84 0.28 1.13 16 7 C 0.58 17.76 7.80 86.81 0.68 18.44 16 8 O -0.56 -17.85 16.31 -3.85 -0.06 -17.92 16 9 N -0.70 -23.91 5.52 -469.63 -2.59 -26.50 16 10 C 0.12 3.90 6.15 85.63 0.53 4.42 16 11 C 0.44 20.06 7.85 87.66 0.69 20.75 16 12 O -0.62 -33.71 15.24 -3.07 -0.05 -33.75 16 13 N -0.58 -27.04 5.09 -306.98 -1.56 -28.60 16 14 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 15 H 0.06 4.16 7.39 -2.91 -0.02 4.13 16 16 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 17 N -0.93 -55.28 13.96 21.67 0.30 -54.98 16 18 Si 0.96 38.34 27.74 68.60 1.90 40.24 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 22 N -0.44 -12.63 9.50 -175.51 -1.67 -14.30 16 23 C 0.12 3.00 7.29 85.03 0.62 3.62 16 24 Cl -0.02 -0.54 28.66 -2.72 -0.08 -0.62 16 25 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 26 H 0.08 0.00 7.69 -2.39 -0.02 -0.02 16 27 H 0.08 0.00 7.69 -2.38 -0.02 -0.02 16 28 H 0.20 0.38 6.43 -2.91 -0.02 0.36 16 29 H 0.18 2.37 7.63 -2.91 -0.02 2.35 16 30 H 0.42 15.83 6.76 -92.71 -0.63 15.20 16 31 H 0.11 3.31 8.14 -2.38 -0.02 3.29 16 32 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.39 15.25 5.76 -92.71 -0.53 14.72 16 34 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.69 321.57 1.07 -78.62 By element: Atomic # 1 Polarization: 31.72 SS G_CDS: -0.03 Total: 31.70 kcal Atomic # 6 Polarization: 25.41 SS G_CDS: 5.81 Total: 31.22 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -5.52 Total: -124.38 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -1.01 Total: -56.77 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.90 Total: 40.24 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.08 Total: -0.62 kcal Total: -79.69 1.07 -78.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821547.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.071 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds