Wall clock time and date at job start Tue Mar 31 2020 04:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86794 * 120.00068 * 2 1 4 4 H 1.48506 * 109.46859 * 269.99758 * 3 2 1 5 5 H 1.48507 * 109.47289 * 29.99344 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99658 * 3 2 1 7 7 C 1.38946 * 119.99834 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99936 * 180.02562 * 7 2 1 9 9 N 1.37104 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.34769 * 119.99793 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00438 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00014 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47402 * 180.02562 * 12 10 9 14 14 C 1.34226 * 116.99683 * 179.97438 * 13 12 10 15 15 O 1.20819 * 120.00578 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99871 * 179.97438 * 14 13 12 17 17 H 1.09001 * 109.47403 * 305.00964 * 16 14 13 18 18 O 1.42895 * 109.47622 * 185.00304 * 16 14 13 19 19 C 1.50706 * 109.46994 * 65.00169 * 16 14 13 20 20 C 1.38244 * 119.98773 * 265.00145 * 19 16 14 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 16 22 22 C 1.38351 * 119.98541 * 0.25893 * 21 20 19 23 23 Cl 1.73604 * 120.00786 * 179.69323 * 22 21 20 24 24 C 1.38349 * 119.97465 * 359.42086 * 22 21 20 25 25 C 1.38212 * 119.98525 * 0.59771 * 24 22 21 26 26 H 0.97007 * 119.99509 * 0.02562 * 1 2 3 27 27 H 0.96996 * 119.99707 * 359.97438 * 9 7 2 28 28 H 1.09004 * 109.46696 * 59.99848 * 12 10 9 29 29 H 1.09005 * 109.47166 * 300.00399 * 12 10 9 30 30 H 0.96708 * 113.99825 * 300.00608 * 18 16 14 31 31 H 1.07999 * 119.99331 * 0.02562 * 20 19 16 32 32 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 33 33 H 1.08008 * 120.00633 * 180.29755 * 24 22 21 34 34 H 1.08001 * 119.99190 * 179.72131 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5456 1.4401 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0011 13 8 2.1873 -5.9666 0.0016 14 6 1.6741 -7.2069 0.0027 15 8 0.4764 -7.3652 0.0028 16 6 2.5921 -8.4021 0.0027 17 1 3.2804 -8.3316 -0.8396 18 8 1.8178 -9.5975 -0.1135 19 6 3.3752 -8.4340 1.2899 20 6 4.6395 -7.8773 1.3435 21 6 5.3584 -7.9068 2.5236 22 6 4.8146 -8.4982 3.6499 23 17 5.7202 -8.5426 5.1303 24 6 3.5467 -9.0492 3.5975 25 6 2.8289 -9.0195 2.4167 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 0.0005 28 1 0.6167 -4.9208 -0.8886 29 1 0.6173 -4.9205 0.8914 30 1 1.1823 -9.7257 0.6040 31 1 5.0656 -7.4194 0.4630 32 1 6.3463 -7.4723 2.5652 33 1 3.1197 -9.5068 4.4777 34 1 1.8409 -9.4536 2.3744 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811282602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:22 Heat of formation + Delta-G solvation = -151.190908 kcal Electronic energy + Delta-G solvation = -22731.079784 eV Core-core repulsion = 18848.127852 eV Total energy + Delta-G solvation = -3882.951931 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91782 -39.55899 -38.27104 -37.29472 -36.59195 -35.90932 -34.04226 -31.98119 -31.41427 -31.32071 -28.86411 -27.10613 -24.62006 -23.18995 -22.53720 -21.05199 -19.64788 -18.41662 -18.15099 -18.02781 -17.02490 -16.70912 -16.03818 -15.92293 -15.68839 -14.94155 -14.59598 -14.42971 -14.05680 -13.95544 -13.76137 -13.69345 -13.31241 -12.81428 -12.45715 -12.25779 -12.11159 -11.81999 -11.74781 -11.65163 -11.24938 -11.16178 -11.07796 -10.52554 -10.46622 -10.38288 -10.29389 -9.63854 -9.33716 -8.93032 -8.56807 -8.11908 -6.53260 -3.95486 0.70257 0.99766 1.84449 2.06454 2.48750 3.10869 3.21438 3.25584 3.28145 3.69271 3.93782 4.05643 4.15715 4.39224 4.51183 4.56735 4.81313 4.98535 4.99838 5.11311 5.21752 5.31743 5.44601 5.61809 5.62581 5.81152 5.92867 5.99222 6.08441 6.41236 6.46986 6.99404 7.44659 7.65065 7.90646 8.44318 9.03543 9.35340 9.84804 10.63887 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003204 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.821721 B = 8735.892871 C =10224.571276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.059 3.941 13 O -0.318 6.318 14 C 0.433 3.567 15 O -0.503 6.503 16 C 0.167 3.833 17 H 0.151 0.849 18 O -0.523 6.523 19 C -0.119 4.119 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.027 4.027 23 Cl -0.070 7.070 24 C -0.110 4.110 25 C -0.095 4.095 26 H 0.274 0.726 27 H 0.395 0.605 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.384 0.616 31 H 0.144 0.856 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.144 -18.562 5.225 19.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.459 6.459 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.274 3.726 15 O -0.392 6.392 16 C 0.106 3.894 17 H 0.168 0.832 18 O -0.329 6.329 19 C -0.120 4.120 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.053 4.053 23 Cl -0.041 7.041 24 C -0.128 4.128 25 C -0.113 4.113 26 H 0.084 0.916 27 H 0.228 0.772 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.235 0.765 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.887 -18.479 4.833 19.988 hybrid contribution -0.787 1.061 0.670 1.481 sum 5.101 -17.418 5.503 18.966 Atomic orbital electron populations 1.69618 1.06019 1.28531 1.49539 1.25317 0.95689 0.99896 0.96814 0.85796 0.79245 0.80381 0.78527 1.20227 1.20786 1.19249 1.19727 0.93484 0.81721 1.48277 0.87582 1.41702 1.09374 1.04093 1.63710 1.19265 0.88337 0.83995 0.86134 1.90559 1.13324 1.86740 1.55299 1.22808 0.90880 0.84590 1.03537 1.86545 1.40359 1.13945 1.82332 1.24518 0.89178 0.85833 0.73026 1.90679 1.16448 1.86648 1.45397 1.20239 0.90078 0.81210 0.97866 0.83222 1.86696 1.55247 1.37837 1.53133 1.20160 0.95921 1.00967 0.94962 1.21038 0.93010 0.96340 0.98487 1.21108 1.01154 0.98942 0.91212 1.21028 0.93822 1.02225 0.88243 1.98380 1.74367 1.97260 1.34057 1.20961 0.92887 1.00280 0.98708 1.20821 0.99889 0.98924 0.91658 0.91591 0.77170 0.89411 0.89565 0.76545 0.83834 0.84252 0.84571 0.85047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.82 13.05 55.50 0.72 -23.09 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 10 C 0.44 10.32 7.86 -10.99 -0.09 10.23 16 11 O -0.58 -15.52 16.08 -14.11 -0.23 -15.75 16 12 C 0.06 1.10 5.94 36.01 0.21 1.31 16 13 O -0.32 -5.58 9.74 -45.89 -0.45 -6.03 16 14 C 0.43 6.38 7.26 36.01 0.26 6.64 16 15 O -0.50 -8.26 16.07 -25.46 -0.41 -8.67 16 16 C 0.17 1.83 3.73 -29.03 -0.11 1.72 16 17 H 0.15 1.38 8.05 -51.93 -0.42 0.96 16 18 O -0.52 -5.40 12.79 -55.14 -0.71 -6.11 16 19 C -0.12 -1.27 4.98 -104.62 -0.52 -1.79 16 20 C -0.07 -0.75 9.68 -39.59 -0.38 -1.14 16 21 C -0.11 -1.10 9.83 -39.55 -0.39 -1.49 16 22 C -0.03 -0.28 6.32 -39.50 -0.25 -0.53 16 23 Cl -0.07 -0.69 28.96 -51.86 -1.50 -2.19 16 24 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 25 C -0.09 -0.90 9.33 -39.59 -0.37 -1.27 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 28 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 29 H 0.09 1.47 8.13 -51.93 -0.42 1.04 16 30 H 0.38 2.98 7.14 45.56 0.33 3.31 16 31 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 34 H 0.13 0.93 6.61 -52.49 -0.35 0.58 16 LS Contribution 328.41 15.07 4.95 4.95 Total: -1.00 -32.64 328.41 -7.34 -39.98 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -2.39 Total: 10.80 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.26 Total: 4.44 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.67 Total: -36.88 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.79 Total: -36.56 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.64 -7.34 -39.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811282602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.208 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds