Wall clock time and date at job start Tue Mar 31 2020 04:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86800 * 119.99909 * 2 1 4 4 H 1.48500 * 109.47414 * 239.99781 * 3 2 1 5 5 H 1.48507 * 109.47331 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47243 * 119.99389 * 3 2 1 7 7 C 1.38949 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00523 * 180.02562 * 7 2 1 9 9 N 1.37102 * 119.99663 * 0.02562 * 7 2 1 10 10 C 1.34770 * 120.00059 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00348 * 180.02562 * 10 9 7 13 13 O 1.45195 * 109.46911 * 180.02562 * 12 10 9 14 14 C 1.34234 * 116.99931 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99648 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00588 * 179.97438 * 14 13 12 17 17 H 1.09002 * 109.46868 * 54.99483 * 16 14 13 18 18 O 1.42896 * 109.47230 * 174.99715 * 16 14 13 19 19 C 1.50696 * 109.46736 * 294.99863 * 16 14 13 20 20 C 1.38247 * 119.98658 * 100.00167 * 19 16 14 21 21 C 1.38216 * 120.01497 * 179.97438 * 20 19 16 22 22 C 1.38357 * 119.98603 * 0.02562 * 21 20 19 23 23 Cl 1.73599 * 120.01134 * 180.02562 * 22 21 20 24 24 C 1.38347 * 119.97107 * 0.28224 * 22 21 20 25 25 C 1.38219 * 119.98930 * 359.40143 * 24 22 21 26 26 H 0.97001 * 120.00459 * 0.02562 * 1 2 3 27 27 H 0.97002 * 120.00002 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.46980 * 60.00178 * 12 10 9 29 29 H 1.08994 * 109.46473 * 300.00075 * 12 10 9 30 30 H 0.96702 * 113.99876 * 60.00439 * 18 16 14 31 31 H 1.08003 * 119.99321 * 359.97438 * 20 19 16 32 32 H 1.08002 * 120.00776 * 180.02562 * 21 20 19 33 33 H 1.08000 * 120.00661 * 179.71600 * 24 22 21 34 34 H 1.07997 * 119.99445 * 180.32231 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2830 2.7465 -0.0006 6 1 3.1017 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8630 0.0000 13 8 2.1874 -5.9665 0.0007 14 6 1.6744 -7.2069 -0.0002 15 8 0.4765 -7.3653 -0.0012 16 6 2.5923 -8.4021 -0.0002 17 1 3.2806 -8.3315 0.8421 18 8 1.8181 -9.5974 0.1162 19 6 3.3754 -8.4340 -1.2873 20 6 4.6778 -7.9713 -1.3155 21 6 5.3966 -8.0008 -2.4956 22 6 4.8124 -8.4931 -3.6491 23 17 5.7149 -8.5311 -5.1315 24 6 3.5068 -8.9502 -3.6217 25 6 2.7911 -8.9262 -2.4395 26 1 -0.4851 0.8400 -0.0004 27 1 0.3533 -2.3906 -0.0002 28 1 0.6175 -4.9205 -0.8903 29 1 0.6168 -4.9208 0.8897 30 1 1.1826 -9.7258 -0.6013 31 1 5.1336 -7.5866 -0.4151 32 1 6.4142 -7.6396 -2.5174 33 1 3.0487 -9.3303 -4.5228 34 1 1.7737 -9.2878 -2.4169 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811282603.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:24 Heat of formation + Delta-G solvation = -151.310174 kcal Electronic energy + Delta-G solvation = -22726.803689 eV Core-core repulsion = 18843.846586 eV Total energy + Delta-G solvation = -3882.957103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.91549 -39.55768 -38.26758 -37.28928 -36.59296 -35.90619 -34.03980 -31.97763 -31.41436 -31.33788 -28.86300 -27.09869 -24.61753 -23.21328 -22.54244 -21.04686 -19.64486 -18.39882 -18.14762 -18.02389 -17.03167 -16.71082 -16.04681 -15.92311 -15.68513 -14.93004 -14.59496 -14.42679 -14.06382 -13.96374 -13.77762 -13.68671 -13.30753 -12.82543 -12.45757 -12.25950 -12.11021 -11.81992 -11.75277 -11.64802 -11.24482 -11.13978 -11.08580 -10.52133 -10.51380 -10.37488 -10.28668 -9.62689 -9.34309 -8.93880 -8.56531 -8.11764 -6.52946 -3.95265 0.70030 0.99132 1.84201 2.06242 2.48807 3.13195 3.20972 3.24084 3.26498 3.69579 3.95941 4.05744 4.15591 4.38281 4.51205 4.56217 4.80899 4.98341 4.99166 5.11493 5.21299 5.31020 5.44677 5.60936 5.62654 5.80530 5.91945 5.99414 6.07783 6.40716 6.46939 6.99793 7.44646 7.65145 7.90664 8.44622 9.03645 9.35494 9.85098 10.64139 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.013761 B = 0.003206 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.194269 B = 8730.402509 C =10207.502996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.438 3.562 11 O -0.575 6.575 12 C 0.059 3.941 13 O -0.318 6.318 14 C 0.433 3.567 15 O -0.503 6.503 16 C 0.167 3.833 17 H 0.150 0.850 18 O -0.523 6.523 19 C -0.118 4.118 20 C -0.071 4.071 21 C -0.106 4.106 22 C -0.026 4.026 23 Cl -0.069 7.069 24 C -0.109 4.109 25 C -0.095 4.095 26 H 0.275 0.725 27 H 0.395 0.605 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.384 0.616 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -18.570 -5.230 19.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.459 6.459 12 C -0.018 4.018 13 O -0.232 6.232 14 C 0.274 3.726 15 O -0.392 6.392 16 C 0.106 3.894 17 H 0.167 0.833 18 O -0.329 6.329 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.053 4.053 23 Cl -0.040 7.040 24 C -0.128 4.128 25 C -0.113 4.113 26 H 0.085 0.915 27 H 0.228 0.772 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.234 0.766 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.869 -18.483 -4.830 19.985 hybrid contribution -0.773 1.064 -0.684 1.482 sum 5.096 -17.419 -5.514 18.968 Atomic orbital electron populations 1.69600 1.06020 1.28654 1.49452 1.25312 0.95682 0.99885 0.96788 0.85857 0.78770 0.80040 0.79224 1.19729 1.20839 1.19712 1.19679 0.93462 0.81738 1.48412 0.87633 1.41695 1.09366 1.04081 1.63703 1.19269 0.88339 0.83998 0.86157 1.90561 1.13326 1.86740 1.55310 1.22804 0.90876 0.84597 1.03532 1.86549 1.40350 1.13944 1.82314 1.24529 0.89179 0.85843 0.73023 1.90682 1.16437 1.86660 1.45414 1.20238 0.90101 0.81225 0.97836 0.83265 1.86695 1.55244 1.37838 1.53105 1.20149 0.95530 1.01440 0.94769 1.21028 0.92908 0.96376 0.98598 1.21105 1.01129 0.99230 0.90972 1.21025 0.93390 1.02840 0.88040 1.98380 1.74630 1.97124 1.33903 1.20964 0.92562 1.00425 0.98809 1.20837 0.99943 0.99019 0.91546 0.91528 0.77167 0.89558 0.89418 0.76553 0.83909 0.84261 0.84557 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.84 13.05 55.50 0.72 -23.12 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 20.50 29.55 -169.99 -5.02 15.48 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.75 5.29 -10.96 -0.06 -13.81 16 10 C 0.44 10.35 7.86 -10.99 -0.09 10.26 16 11 O -0.58 -15.59 16.08 -14.12 -0.23 -15.82 16 12 C 0.06 1.10 5.94 36.01 0.21 1.32 16 13 O -0.32 -5.61 9.74 -45.91 -0.45 -6.05 16 14 C 0.43 6.38 7.25 36.00 0.26 6.64 16 15 O -0.50 -8.25 16.07 -25.47 -0.41 -8.66 16 16 C 0.17 1.83 3.73 -29.04 -0.11 1.73 16 17 H 0.15 1.37 8.00 -51.93 -0.42 0.96 16 18 O -0.52 -5.42 12.84 -55.14 -0.71 -6.13 16 19 C -0.12 -1.26 4.95 -104.62 -0.52 -1.77 16 20 C -0.07 -0.75 9.67 -39.59 -0.38 -1.13 16 21 C -0.11 -1.09 9.83 -39.55 -0.39 -1.48 16 22 C -0.03 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.07 -0.68 28.96 -51.86 -1.50 -2.19 16 24 C -0.11 -1.04 9.83 -39.55 -0.39 -1.43 16 25 C -0.10 -0.91 9.31 -39.59 -0.37 -1.28 16 26 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 28 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 29 H 0.09 1.49 8.13 -51.93 -0.42 1.06 16 30 H 0.38 3.00 7.25 45.56 0.33 3.33 16 31 H 0.14 1.30 8.04 -52.48 -0.42 0.88 16 32 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 0.96 6.78 -52.49 -0.36 0.60 16 LS Contribution 328.61 15.07 4.95 4.95 Total: -1.00 -32.73 328.61 -7.34 -40.07 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -2.39 Total: 10.80 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: -2.26 Total: 4.48 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.67 Total: -36.93 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.79 Total: -36.66 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.73 -7.34 -40.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811282603.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.242 kcal (2) G-P(sol) polarization free energy of solvation -32.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds