Wall clock time and date at job start Tue Mar 31 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48501 * 109.46983 * 239.99658 * 3 2 1 5 5 H 1.48502 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47366 * 119.99187 * 3 2 1 7 7 C 1.37878 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99998 * 0.02562 * 7 2 1 10 10 S 1.81391 * 109.47227 * 179.97438 * 9 7 2 11 11 O 1.42106 * 110.54546 * 68.37929 * 10 9 7 12 12 O 1.42097 * 110.54742 * 291.62551 * 10 9 7 13 13 N 1.65601 * 104.45234 * 180.02562 * 10 9 7 14 14 C 1.34778 * 119.99750 * 65.00077 * 13 10 9 15 15 O 1.21582 * 120.00450 * 359.97438 * 14 13 10 16 16 C 1.47613 * 119.99806 * 180.02562 * 14 13 10 17 17 C 1.39697 * 120.08220 * 0.02562 * 16 14 13 18 18 C 1.37770 * 120.00519 * 179.75242 * 17 16 14 19 19 C 1.38862 * 120.21472 * 0.44457 * 18 17 16 20 20 C 1.39542 * 120.05647 * 359.55719 * 19 18 17 21 21 C 1.38124 * 119.98086 * 0.22277 * 20 19 18 22 22 O 1.36538 * 108.59744 * 180.23541 * 20 19 18 23 23 C 1.43977 * 105.44817 * 342.69639 * 22 20 19 24 24 O 1.36365 * 131.35362 * 179.86624 * 19 18 17 25 25 H 0.96999 * 119.99856 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47257 * 59.99769 * 9 7 2 27 27 H 1.09004 * 109.47310 * 300.00280 * 9 7 2 28 28 H 0.97006 * 120.00368 * 245.00539 * 13 10 9 29 29 H 1.07997 * 120.00417 * 359.97438 * 17 16 14 30 30 H 1.07996 * 119.89406 * 180.30187 * 18 17 16 31 31 H 1.07999 * 120.04913 * 180.02562 * 21 20 19 32 32 H 1.09007 * 110.56682 * 268.60989 * 23 22 20 33 33 H 1.09000 * 110.56746 * 145.75573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8778 0.0005 11 8 3.1266 -3.9383 1.2376 12 8 3.1267 -3.9383 -1.2364 13 7 1.4796 -5.2341 -0.0002 14 6 0.6893 -5.5025 -1.0584 15 8 0.6737 -4.7488 -2.0123 16 6 -0.1582 -6.7111 -1.0588 17 6 -0.1428 -7.5775 0.0369 18 6 -0.9383 -8.7024 0.0371 19 6 -1.7502 -8.9842 -1.0536 20 6 -1.7700 -8.1228 -2.1513 21 6 -0.9780 -6.9912 -2.1550 22 8 -2.6437 -8.6170 -3.0769 23 6 -2.8482 -9.9952 -2.7137 24 8 -2.6106 -10.0145 -1.2940 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 1.4917 -5.8352 0.7610 29 1 0.4899 -7.3637 0.8856 30 1 -0.9286 -9.3683 0.8872 31 1 -0.9929 -6.3236 -3.0038 32 1 -2.1346 -10.6372 -3.2302 33 1 -3.8705 -10.3018 -2.9350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:58 Heat of formation + Delta-G solvation = -139.475614 kcal Electronic energy + Delta-G solvation = -23217.241459 eV Core-core repulsion = 19336.841247 eV Total energy + Delta-G solvation = -3880.400212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54427 -40.13750 -37.62710 -36.67634 -36.25721 -35.21398 -34.30505 -33.35726 -31.10100 -30.43898 -29.06566 -26.38748 -24.50723 -23.54673 -23.25353 -21.65085 -19.40402 -18.92741 -18.28331 -17.73289 -17.43944 -16.86284 -16.38685 -16.14368 -15.74776 -14.93733 -14.84087 -14.80034 -14.62930 -14.23761 -14.21268 -13.98566 -13.39585 -13.25222 -13.11727 -12.54036 -12.19101 -11.95418 -11.56123 -11.48442 -11.34194 -11.27922 -11.22990 -10.88710 -10.68305 -10.55043 -10.22031 -9.85178 -9.28714 -9.19283 -8.70235 -8.49934 -6.32903 -4.44532 0.32634 0.85394 0.98186 2.23472 2.49943 2.95117 3.19433 3.25023 3.27548 3.32033 3.39535 4.04897 4.17623 4.27067 4.27892 4.47939 4.54596 4.64672 4.68969 4.81919 4.97711 5.10616 5.15823 5.18895 5.56787 5.68837 5.76280 5.81851 5.93546 6.56588 6.69762 6.74447 6.93149 7.40798 7.64195 7.74129 8.56362 9.22939 10.78746 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.003301 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.671003 B = 8479.865468 C = 9023.873374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.071 0.929 9 C -0.403 4.403 10 S 2.553 3.447 11 O -0.966 6.966 12 O -0.950 6.950 13 N -1.056 6.056 14 C 0.583 3.417 15 O -0.478 6.478 16 C -0.127 4.127 17 C -0.067 4.067 18 C -0.108 4.108 19 C 0.060 3.940 20 C 0.022 3.978 21 C -0.036 4.036 22 O -0.304 6.304 23 C 0.212 3.788 24 O -0.306 6.306 25 H 0.270 0.730 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.423 0.577 29 H 0.147 0.853 30 H 0.145 0.855 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 -20.431 -0.639 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.089 0.911 9 C -0.540 4.540 10 S 2.655 3.345 11 O -0.957 6.957 12 O -0.940 6.940 13 N -0.816 5.816 14 C 0.370 3.630 15 O -0.350 6.350 16 C -0.132 4.132 17 C -0.086 4.086 18 C -0.127 4.127 19 C 0.015 3.985 20 C -0.022 4.022 21 C -0.055 4.055 22 O -0.220 6.220 23 C 0.101 3.899 24 O -0.222 6.222 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.258 0.742 29 H 0.165 0.835 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.104 0.896 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.738 -19.915 -1.421 20.774 hybrid contribution -0.451 0.396 0.332 0.686 sum -6.189 -19.519 -1.089 20.506 Atomic orbital electron populations 1.69947 1.06263 1.27899 1.47108 1.24919 0.95039 0.99574 0.93359 0.86393 0.79608 0.81262 0.79466 1.19351 1.20681 1.19404 1.20243 0.92726 0.88438 1.56193 0.91133 1.27600 1.09824 1.09016 1.07542 1.07206 0.77260 0.75864 0.74125 1.93526 1.71050 1.85883 1.45243 1.93535 1.70732 1.85099 1.44655 1.55461 1.55954 1.43964 1.26177 1.17796 0.78416 0.85238 0.81562 1.91011 1.63500 1.47997 1.32454 1.19562 1.00917 0.96954 0.95729 1.21134 0.97611 0.92330 0.97536 1.19969 0.95994 0.99201 0.97499 1.20118 0.92954 0.89082 0.96368 1.19559 0.95331 0.97657 0.89685 1.20122 0.91637 0.94614 0.99125 1.87428 1.59722 1.25363 1.49472 1.25698 1.04139 0.82555 0.77554 1.87345 1.60074 1.48908 1.25843 0.92063 0.88260 0.89558 0.74203 0.83531 0.83711 0.82754 0.89557 0.84875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.97 13.29 55.43 0.74 -24.23 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.91 9.13 -34.44 -0.31 -15.23 16 8 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 9 C -0.40 -9.89 5.64 36.00 0.20 -9.69 16 10 S 2.55 54.10 5.03 -107.50 -0.54 53.56 16 11 O -0.97 -21.43 18.08 -57.54 -1.04 -22.47 16 12 O -0.95 -23.23 17.03 -64.79 -1.10 -24.34 16 13 N -1.06 -16.43 5.55 30.48 0.17 -16.26 16 14 C 0.58 9.57 7.50 -12.43 -0.09 9.47 16 15 O -0.48 -9.77 14.43 -11.85 -0.17 -9.95 16 16 C -0.13 -1.61 5.87 -104.97 -0.62 -2.22 16 17 C -0.07 -0.63 9.53 -39.21 -0.37 -1.00 16 18 C -0.11 -0.94 10.04 -39.52 -0.40 -1.34 16 19 C 0.06 0.62 7.16 -38.86 -0.28 0.35 16 20 C 0.02 0.26 7.14 -39.14 -0.28 -0.02 16 21 C -0.04 -0.45 9.60 -39.07 -0.38 -0.83 16 22 O -0.30 -3.27 11.41 -45.81 -0.52 -3.80 16 23 C 0.21 1.49 8.88 101.05 0.90 2.38 16 24 O -0.31 -2.91 11.39 -45.24 -0.52 -3.42 16 25 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.10 2.55 7.19 -51.92 -0.37 2.18 16 27 H 0.09 2.03 8.14 -51.92 -0.42 1.61 16 28 H 0.42 4.59 6.81 -34.48 -0.23 4.35 16 29 H 0.15 0.92 6.39 -52.49 -0.34 0.58 16 30 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.15 2.00 7.64 -52.49 -0.40 1.60 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.13 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 309.56 15.07 4.67 4.67 Total: -1.00 -36.80 309.56 -7.64 -44.44 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -2.57 Total: 1.84 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -1.72 Total: -16.06 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.91 Total: -40.49 kcal Atomic # 8 Polarization: -60.62 SS G_CDS: -3.35 Total: -63.97 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 54.10 SS G_CDS: -0.54 Total: 53.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -36.80 -7.64 -44.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.034 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds