Wall clock time and date at job start Tue Mar 31 2020 04:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48501 * 109.46983 * 239.99658 * 3 2 1 5 5 H 1.48502 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47366 * 119.99187 * 3 2 1 7 7 C 1.37878 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99964 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99998 * 0.02562 * 7 2 1 10 10 S 1.81391 * 109.47227 * 179.97438 * 9 7 2 11 11 O 1.42106 * 110.54546 * 68.37929 * 10 9 7 12 12 O 1.42097 * 110.54742 * 291.62551 * 10 9 7 13 13 N 1.65601 * 104.45234 * 180.02562 * 10 9 7 14 14 C 1.34778 * 119.99750 * 65.00077 * 13 10 9 15 15 O 1.21582 * 120.00450 * 359.97438 * 14 13 10 16 16 C 1.47613 * 119.99806 * 180.02562 * 14 13 10 17 17 C 1.39697 * 120.08220 * 0.02562 * 16 14 13 18 18 C 1.37770 * 120.00519 * 179.75242 * 17 16 14 19 19 C 1.38862 * 120.21472 * 0.44457 * 18 17 16 20 20 C 1.39542 * 120.05647 * 359.55719 * 19 18 17 21 21 C 1.38124 * 119.98086 * 0.22277 * 20 19 18 22 22 O 1.36538 * 108.59744 * 180.23541 * 20 19 18 23 23 C 1.43977 * 105.44817 * 342.69639 * 22 20 19 24 24 O 1.36365 * 131.35362 * 179.86624 * 19 18 17 25 25 H 0.96999 * 119.99856 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47257 * 59.99769 * 9 7 2 27 27 H 1.09004 * 109.47310 * 300.00280 * 9 7 2 28 28 H 0.97006 * 120.00368 * 245.00539 * 13 10 9 29 29 H 1.07997 * 120.00417 * 359.97438 * 17 16 14 30 30 H 1.07996 * 119.89406 * 180.30187 * 18 17 16 31 31 H 1.07999 * 120.04913 * 180.02562 * 21 20 19 32 32 H 1.09007 * 110.56682 * 268.60989 * 23 22 20 33 33 H 1.09000 * 110.56746 * 145.75573 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 16 2.4299 -3.8778 0.0005 11 8 3.1266 -3.9383 1.2376 12 8 3.1267 -3.9383 -1.2364 13 7 1.4796 -5.2341 -0.0002 14 6 0.6893 -5.5025 -1.0584 15 8 0.6737 -4.7488 -2.0123 16 6 -0.1582 -6.7111 -1.0588 17 6 -0.1428 -7.5775 0.0369 18 6 -0.9383 -8.7024 0.0371 19 6 -1.7502 -8.9842 -1.0536 20 6 -1.7700 -8.1228 -2.1513 21 6 -0.9780 -6.9912 -2.1550 22 8 -2.6437 -8.6170 -3.0769 23 6 -2.8482 -9.9952 -2.7137 24 8 -2.6106 -10.0145 -1.2940 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8903 28 1 1.4917 -5.8352 0.7610 29 1 0.4899 -7.3637 0.8856 30 1 -0.9286 -9.3683 0.8872 31 1 -0.9929 -6.3236 -3.0038 32 1 -2.1346 -10.6372 -3.2302 33 1 -3.8705 -10.3018 -2.9350 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584096.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:57 Heat of formation + Delta-G solvation = -168.774207 kcal Electronic energy + Delta-G solvation = -23218.511941 eV Core-core repulsion = 19336.841247 eV Total energy + Delta-G solvation = -3881.670694 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.28810 -41.41470 -38.60637 -38.04143 -37.41928 -37.06421 -35.74725 -35.41500 -31.94815 -31.29974 -31.08073 -27.06600 -25.70398 -25.37572 -24.07767 -22.78005 -20.92610 -20.06756 -19.21412 -19.03334 -18.53228 -18.35352 -17.67430 -17.48433 -17.13184 -16.58217 -16.27403 -16.01676 -15.91961 -15.57811 -15.00559 -14.92359 -14.49703 -14.17539 -14.12184 -14.02316 -13.85253 -13.64062 -13.48558 -13.20573 -13.10038 -12.71639 -12.54782 -12.38893 -12.12873 -11.97913 -11.87053 -11.57294 -11.08289 -10.77843 -10.10641 -9.29767 -8.41755 -6.61175 -0.77804 -0.59932 0.05025 1.22722 1.38237 1.42866 1.47208 1.50844 1.73695 2.30542 2.39475 2.45394 2.75302 2.92450 3.08213 3.25559 3.36900 3.72939 3.84471 3.90771 3.92602 4.02328 4.22497 4.41213 4.65841 4.75906 4.77526 4.85275 5.00357 5.02137 5.14286 5.29648 5.67085 5.72208 5.94220 6.37376 6.49057 7.10636 8.70915 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.025341 B = 0.003301 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.671003 B = 8479.865468 C = 9023.873374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.423 4.423 10 S 2.602 3.398 11 O -0.972 6.972 12 O -0.982 6.982 13 N -1.036 6.036 14 C 0.584 3.416 15 O -0.527 6.527 16 C -0.145 4.145 17 C -0.050 4.050 18 C -0.098 4.098 19 C 0.065 3.935 20 C 0.008 3.992 21 C -0.052 4.052 22 O -0.324 6.324 23 C 0.203 3.797 24 O -0.310 6.310 25 H 0.274 0.726 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.446 0.554 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.136 0.864 32 H 0.110 0.890 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.313 -22.457 0.855 23.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.179 4.179 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.608 4.608 8 H 0.088 0.912 9 C -0.558 4.558 10 S 2.702 3.298 11 O -0.962 6.962 12 O -0.973 6.973 13 N -0.802 5.802 14 C 0.373 3.627 15 O -0.402 6.402 16 C -0.150 4.150 17 C -0.068 4.068 18 C -0.116 4.116 19 C 0.020 3.980 20 C -0.037 4.037 21 C -0.072 4.072 22 O -0.241 6.241 23 C 0.093 3.907 24 O -0.226 6.226 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.107 0.893 28 H 0.287 0.713 29 H 0.200 0.800 30 H 0.201 0.799 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.754 -21.959 0.109 22.700 hybrid contribution -0.566 0.811 -0.155 1.000 sum -6.319 -21.148 -0.045 22.072 Atomic orbital electron populations 1.70037 1.07658 1.29023 1.47737 1.25883 0.95988 1.03284 0.92717 0.85463 0.78661 0.77054 0.79924 1.18980 1.19443 1.18072 1.20711 0.93194 0.90347 1.56539 0.91197 1.27680 1.10789 1.10710 1.06597 1.05420 0.75991 0.75359 0.73030 1.93511 1.71128 1.86222 1.45370 1.93494 1.71552 1.85780 1.46441 1.54829 1.55271 1.42808 1.27291 1.18394 0.77977 0.85801 0.80522 1.90990 1.65024 1.49905 1.34307 1.19252 1.01616 0.96515 0.97604 1.21514 0.97212 0.91202 0.96893 1.20383 0.94414 0.98994 0.97845 1.20426 0.92677 0.88727 0.96201 1.19577 0.95641 0.97717 0.90721 1.20034 0.92825 0.95298 0.99042 1.87402 1.59531 1.27347 1.49829 1.26249 1.06874 0.81111 0.76503 1.87338 1.59633 1.48359 1.27259 0.91668 0.90362 0.89277 0.71278 0.80032 0.79949 0.84585 0.87245 0.81735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.84 13.29 21.45 0.28 -52.56 16 2 C 0.02 1.39 5.46 84.65 0.46 1.85 16 3 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.57 -32.37 9.13 25.60 0.23 -32.14 16 8 H 0.07 3.85 7.71 -2.91 -0.02 3.82 16 9 C -0.42 -21.46 5.64 71.24 0.40 -21.06 16 10 S 2.60 110.65 5.03 -56.49 -0.28 110.36 16 11 O -0.97 -42.07 18.08 -127.65 -2.31 -44.38 16 12 O -0.98 -48.80 17.03 -120.72 -2.06 -50.86 16 13 N -1.04 -31.38 5.55 -175.76 -0.98 -32.36 16 14 C 0.58 19.35 7.50 86.72 0.65 20.00 16 15 O -0.53 -22.72 14.43 12.41 0.18 -22.54 16 16 C -0.14 -3.59 5.87 -20.09 -0.12 -3.70 16 17 C -0.05 -0.77 9.53 22.51 0.21 -0.56 16 18 C -0.10 -1.33 10.04 22.31 0.22 -1.10 16 19 C 0.07 1.20 7.16 22.73 0.16 1.36 16 20 C 0.01 0.18 7.14 22.56 0.16 0.34 16 21 C -0.05 -1.37 9.60 22.60 0.22 -1.15 16 22 O -0.32 -6.77 11.41 -76.50 -0.87 -7.64 16 23 C 0.20 2.37 8.88 113.37 1.01 3.38 16 24 O -0.31 -5.01 11.39 -74.47 -0.85 -5.86 16 25 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 26 H 0.08 4.26 7.19 -2.39 -0.02 4.24 16 27 H 0.09 4.34 8.14 -2.39 -0.02 4.32 16 28 H 0.45 8.55 6.81 -96.74 -0.66 7.89 16 29 H 0.18 1.42 6.39 -2.91 -0.02 1.40 16 30 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.14 3.91 7.64 -2.91 -0.02 3.89 16 32 H 0.11 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -82.19 309.56 -0.71 -82.90 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.53 Total: 10.54 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 3.62 Total: -32.79 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -0.69 Total: -84.92 kcal Atomic # 8 Polarization: -125.37 SS G_CDS: -5.91 Total: -131.27 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 110.65 SS G_CDS: -0.28 Total: 110.36 kcal Total: -82.19 -0.71 -82.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584096.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.879 kcal (2) G-P(sol) polarization free energy of solvation -82.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds