Wall clock time and date at job start Tue Mar 31 2020 04:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86808 * 120.00085 * 2 1 4 4 H 1.48500 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46946 * 300.00095 * 3 2 1 6 6 H 1.48502 * 109.47014 * 59.99652 * 3 2 1 7 7 C 1.38815 * 120.00071 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99740 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99738 * 0.02562 * 7 2 1 10 10 S 1.65596 * 119.99650 * 185.08718 * 9 7 2 11 11 O 1.42105 * 106.40186 * 177.26035 * 10 9 7 12 12 O 1.42102 * 106.40368 * 310.18246 * 10 9 7 13 13 C 1.76202 * 107.22107 * 63.72065 * 10 9 7 14 14 C 1.38299 * 119.89771 * 244.78873 * 13 10 9 15 15 C 1.38013 * 120.14750 * 179.97438 * 14 13 10 16 16 C 1.39335 * 119.93029 * 0.02562 * 15 14 13 17 17 C 1.48460 * 120.10158 * 179.97438 * 16 15 14 18 18 N 1.34049 * 126.67464 * 359.68352 * 17 16 15 19 19 N 1.28996 * 107.26705 * 179.83858 * 18 17 16 20 20 N 1.28734 * 108.94114 * 0.43414 * 19 18 17 21 21 H 0.97000 * 125.33899 * 179.74977 * 20 19 18 22 22 N 1.28870 * 109.31717 * 359.72674 * 20 19 18 23 23 C 1.39242 * 119.79283 * 359.97438 * 16 15 14 24 24 C 1.38283 * 119.85237 * 359.74999 * 23 16 15 25 25 F 1.35105 * 119.96713 * 180.25225 * 24 23 16 26 26 H 0.97000 * 119.99366 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00256 * 5.35082 * 9 7 2 28 28 H 1.08004 * 119.92035 * 359.95401 * 14 13 10 29 29 H 1.07997 * 120.03718 * 179.97438 * 15 14 13 30 30 H 1.08000 * 120.07569 * 180.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3965 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 16 2.1487 -3.8193 0.1283 11 8 1.1662 -4.8454 0.1635 12 8 3.1887 -3.7718 -0.8388 13 6 2.9355 -3.8296 1.7049 14 6 4.3161 -3.8289 1.7863 15 6 4.9378 -3.8364 3.0184 16 6 4.1729 -3.8452 4.1830 17 6 4.8377 -3.8538 5.5104 18 7 6.1575 -3.8602 5.7449 19 7 6.3191 -3.8632 7.0247 20 7 5.1633 -3.8681 7.5917 21 1 5.0082 -3.8746 8.5492 22 7 4.2449 -3.8627 6.6877 23 6 2.7831 -3.8459 4.0979 24 6 2.1693 -3.8325 2.8588 25 9 0.8210 -3.8280 2.7736 26 1 -0.4849 0.8401 -0.0004 27 1 0.3588 -2.3899 -0.0782 28 1 4.9090 -3.8228 0.8835 29 1 6.0160 -3.8362 3.0799 30 1 2.1857 -3.8523 4.9977 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822810054.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:04 Heat of formation + Delta-G solvation = 37.066024 kcal Electronic energy + Delta-G solvation = -23206.631307 eV Core-core repulsion = 19275.011712 eV Total energy + Delta-G solvation = -3931.619595 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 313.043 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.69485 -44.68654 -38.83951 -35.99734 -34.75832 -34.68990 -34.59666 -33.76836 -31.11110 -30.80886 -30.35468 -25.14024 -24.78395 -24.64666 -22.47974 -21.96962 -19.48003 -18.64557 -18.27277 -17.61020 -17.36854 -16.81671 -16.44453 -16.00196 -15.31942 -15.18145 -14.66800 -14.29743 -14.19744 -14.00542 -13.60354 -13.10646 -12.83791 -12.70192 -12.25313 -12.05576 -11.62295 -11.59064 -11.42250 -11.23356 -11.15286 -11.07588 -10.96474 -10.87672 -10.60882 -10.40765 -10.05455 -10.01534 -9.00727 -8.63418 -8.40613 -6.65172 -4.01384 0.37707 0.93652 1.31564 1.50056 1.99132 2.09981 3.11155 3.16822 3.20806 3.39448 3.57176 3.92404 3.95759 4.37742 4.47525 4.68663 4.84727 4.97633 5.01829 5.12020 5.22054 5.38680 5.65981 5.73099 5.99781 6.10430 6.16030 6.26577 6.30041 6.88409 6.94829 7.32405 7.90278 8.53240 8.63171 9.09415 10.48906 Molecular weight = 313.04amu Principal moments of inertia in cm(-1) A = 0.014775 B = 0.004750 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.622178 B = 5893.227097 C = 6715.381175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.032 3.968 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.110 0.890 9 N -0.932 5.932 10 S 2.574 3.426 11 O -0.996 6.996 12 O -0.969 6.969 13 C -0.672 4.672 14 C -0.005 4.005 15 C -0.112 4.112 16 C 0.035 3.965 17 C 0.221 3.779 18 N -0.261 5.261 19 N -0.050 5.050 20 N -0.227 5.227 21 H 0.476 0.524 22 N -0.288 5.288 23 C -0.141 4.141 24 C 0.195 3.805 25 F -0.117 7.117 26 H 0.278 0.722 27 H 0.413 0.587 28 H 0.156 0.844 29 H 0.144 0.856 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -3.822 12.699 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.179 4.179 3 Si 0.750 3.250 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.402 4.402 8 H 0.128 0.872 9 N -0.682 5.682 10 S 2.664 3.336 11 O -0.985 6.985 12 O -0.959 6.959 13 C -0.750 4.750 14 C -0.024 4.024 15 C -0.133 4.133 16 C 0.031 3.969 17 C -0.059 4.059 18 N -0.134 5.134 19 N -0.045 5.045 20 N -0.073 5.073 21 H 0.330 0.670 22 N -0.139 5.139 23 C -0.163 4.163 24 C 0.174 3.826 25 F -0.095 7.095 26 H 0.088 0.912 27 H 0.249 0.751 28 H 0.173 0.827 29 H 0.162 0.838 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.045 -4.635 12.620 15.668 hybrid contribution -0.637 1.147 1.348 1.881 sum 7.409 -3.487 13.968 16.191 Atomic orbital electron populations 1.69716 1.06205 1.28810 1.45152 1.25431 0.95710 0.99972 0.96739 0.85880 0.79939 0.80940 0.78217 1.18688 1.20163 1.20411 1.19591 0.92633 0.82942 1.45041 0.87247 1.52024 1.18575 1.20394 1.77230 1.08989 0.73322 0.74845 0.76421 1.93426 1.59143 1.58356 1.87548 1.93445 1.57855 1.87315 1.57258 1.32526 1.05216 1.11989 1.25238 1.20830 0.92039 0.91136 0.98431 1.21298 1.00736 1.00433 0.90864 1.17011 0.91648 1.01542 0.86660 1.23622 0.87647 1.01661 0.92926 1.76103 1.15483 1.17361 1.04493 1.78917 1.08893 1.14789 1.01933 1.47735 1.01423 1.46019 1.12158 0.66989 1.74973 1.19438 1.21488 0.98012 1.21036 0.93835 1.04037 0.97360 1.16764 0.77122 0.95909 0.92791 1.91612 1.28148 1.92826 1.96946 0.91171 0.75072 0.82685 0.83803 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.71 13.07 55.49 0.73 -20.99 16 2 C 0.03 0.77 5.50 -17.43 -0.10 0.68 16 3 Si 0.92 18.72 29.55 -169.99 -5.02 13.70 16 4 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.26 -6.23 9.63 -15.06 -0.15 -6.38 16 8 H 0.11 2.51 7.81 -52.49 -0.41 2.10 16 9 N -0.93 -22.07 5.74 31.50 0.18 -21.89 16 10 S 2.57 57.23 5.33 -107.50 -0.57 56.66 16 11 O -1.00 -24.14 17.44 -57.17 -1.00 -25.13 16 12 O -0.97 -22.73 16.68 -57.17 -0.95 -23.68 16 13 C -0.67 -13.04 5.81 -39.46 -0.23 -13.27 16 14 C -0.01 -0.09 9.53 -39.64 -0.38 -0.47 16 15 C -0.11 -1.64 9.70 -39.26 -0.38 -2.02 16 16 C 0.04 0.52 5.87 -104.90 -0.62 -0.09 16 17 C 0.22 3.02 7.94 -156.30 -1.24 1.78 16 18 N -0.26 -3.49 12.23 32.16 0.39 -3.10 16 19 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 20 N -0.23 -1.92 7.90 60.35 0.48 -1.44 16 21 H 0.48 1.54 8.96 -340.36 -3.05 -1.51 16 22 N -0.29 -3.35 12.08 32.17 0.39 -2.96 16 23 C -0.14 -2.24 9.68 -39.19 -0.38 -2.62 16 24 C 0.19 3.66 7.20 -39.46 -0.28 3.38 16 25 F -0.12 -2.36 16.28 2.25 0.04 -2.32 16 26 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 27 H 0.41 9.99 8.04 -34.47 -0.28 9.71 16 28 H 0.16 2.36 7.32 -52.48 -0.38 1.97 16 29 H 0.14 1.76 7.89 -52.49 -0.41 1.34 16 30 H 0.15 2.01 7.88 -52.49 -0.41 1.59 16 LS Contribution 298.18 15.07 4.49 4.49 Total: -1.00 -31.28 298.18 -7.87 -39.15 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.08 Total: 6.28 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -3.75 Total: -19.02 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 2.98 Total: -50.13 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -1.95 Total: -48.82 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.02 Total: 13.70 kcal Atomic # 16 Polarization: 57.23 SS G_CDS: -0.57 Total: 56.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.28 -7.87 -39.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822810054.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.219 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds