Wall clock time and date at job start Tue Mar 31 2020 04:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48498 * 109.46830 * 269.99953 * 3 2 1 5 5 H 1.48495 * 109.47012 * 29.99850 * 3 2 1 6 6 H 1.48499 * 109.47108 * 149.99959 * 3 2 1 7 7 C 1.37883 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.46778 * 179.97438 * 9 7 2 11 11 O 1.42103 * 110.54327 * 68.37894 * 10 9 7 12 12 O 1.42092 * 110.54432 * 291.62440 * 10 9 7 13 13 N 1.65598 * 104.44939 * 179.97438 * 10 9 7 14 14 C 1.34786 * 119.99810 * 64.99892 * 13 10 9 15 15 O 1.21588 * 119.99987 * 359.72887 * 14 13 10 16 16 C 1.47546 * 119.99972 * 179.97438 * 14 13 10 17 17 C 1.39809 * 120.15528 * 359.72702 * 16 14 13 18 18 C 1.37751 * 119.97921 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.35795 * 0.02749 * 18 17 16 20 20 C 1.38434 * 120.37085 * 359.97194 * 19 18 17 21 21 C 1.39282 * 119.92143 * 359.74598 * 20 19 18 22 22 O 1.36210 * 108.71937 * 179.82059 * 21 20 19 23 23 C 1.43978 * 105.58601 * 343.08942 * 22 21 20 24 24 O 1.36546 * 131.49689 * 179.97438 * 20 19 18 25 25 H 0.97005 * 119.99519 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47058 * 60.00098 * 9 7 2 27 27 H 1.08999 * 109.46922 * 299.99837 * 9 7 2 28 28 H 0.96995 * 120.00638 * 245.00504 * 13 10 9 29 29 H 1.08000 * 120.00933 * 359.95267 * 17 16 14 30 30 H 1.08000 * 119.81969 * 180.02562 * 18 17 16 31 31 H 1.07994 * 119.81359 * 179.97438 * 19 18 17 32 32 H 1.09006 * 110.57216 * 268.33157 * 23 22 21 33 33 H 1.08994 * 110.70627 * 145.51414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 16 2.4296 -3.8780 0.0014 11 8 3.1273 -3.9379 1.2379 12 8 3.1254 -3.9390 -1.2360 13 7 1.4792 -5.2341 0.0035 14 6 0.6873 -5.5036 -1.0534 15 8 0.6670 -4.7485 -2.0061 16 6 -0.1591 -6.7122 -1.0518 17 6 -0.1379 -7.5831 0.0417 18 6 -0.9299 -8.7101 0.0396 19 6 -1.7495 -8.9878 -1.0422 20 6 -1.7820 -8.1356 -2.1327 21 6 -0.9911 -6.9891 -2.1423 22 8 -1.1964 -6.3262 -3.3143 23 6 -1.8178 -7.2808 -4.1950 24 8 -2.4901 -8.1854 -3.2991 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8920 28 1 1.4923 -5.8345 0.7652 29 1 0.4996 -7.3724 0.8877 30 1 -0.9118 -9.3808 0.8858 31 1 -2.3665 -9.8741 -1.0348 32 1 -1.0646 -7.8099 -4.7790 33 1 -2.5347 -6.7890 -4.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:01 Heat of formation + Delta-G solvation = -136.837369 kcal Electronic energy + Delta-G solvation = -23682.932931 eV Core-core repulsion = 19802.647122 eV Total energy + Delta-G solvation = -3880.285809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.47297 -39.88488 -37.78659 -36.48239 -36.22602 -35.18409 -34.21620 -33.33916 -31.12908 -30.26873 -29.04506 -26.08688 -24.72527 -23.52663 -23.16865 -21.50644 -19.42185 -18.71806 -18.15532 -17.64675 -17.16338 -17.02366 -16.37572 -16.20613 -15.68341 -15.04943 -14.81441 -14.67588 -14.48467 -14.24541 -14.18609 -13.94861 -13.15662 -13.01015 -12.56315 -12.51998 -12.17019 -11.99590 -11.90539 -11.45805 -11.30357 -11.24170 -11.20300 -10.90039 -10.65066 -10.50459 -10.09112 -9.80493 -9.25740 -9.15951 -8.69303 -8.38623 -6.31347 -4.42816 0.41311 0.82106 1.02074 2.41043 2.59006 3.10533 3.16822 3.23748 3.28975 3.34139 3.41126 3.98081 4.24760 4.41228 4.44552 4.50872 4.61991 4.72673 4.79786 4.83936 4.99494 5.08019 5.18202 5.22360 5.53738 5.64125 5.81666 5.91665 6.02969 6.59146 6.77535 6.79855 6.97536 7.42937 7.71301 7.76719 8.58326 9.24475 10.80437 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.003981 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.903368 B = 7031.988790 C = 7728.753515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.536 4.536 8 H 0.071 0.929 9 C -0.403 4.403 10 S 2.554 3.446 11 O -0.967 6.967 12 O -0.951 6.951 13 N -1.057 6.057 14 C 0.576 3.424 15 O -0.468 6.468 16 C -0.123 4.123 17 C -0.074 4.074 18 C -0.118 4.118 19 C -0.074 4.074 20 C 0.020 3.980 21 C 0.104 3.896 22 O -0.278 6.278 23 C 0.207 3.793 24 O -0.307 6.307 25 H 0.269 0.731 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.422 0.578 29 H 0.145 0.855 30 H 0.147 0.853 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.112 -19.676 -1.252 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.129 4.129 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.089 0.911 9 C -0.540 4.540 10 S 2.656 3.344 11 O -0.958 6.958 12 O -0.941 6.941 13 N -0.817 5.817 14 C 0.363 3.637 15 O -0.339 6.339 16 C -0.129 4.129 17 C -0.092 4.092 18 C -0.137 4.137 19 C -0.093 4.093 20 C -0.025 4.025 21 C 0.057 3.943 22 O -0.192 6.192 23 C 0.095 3.905 24 O -0.224 6.224 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.257 0.743 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.159 0.841 32 H 0.106 0.894 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.472 -18.966 -2.151 19.857 hybrid contribution -0.357 0.674 0.186 0.785 sum -5.829 -18.292 -1.965 19.299 Atomic orbital electron populations 1.69963 1.06283 1.27751 1.47225 1.24925 0.95031 0.99581 0.93378 0.86331 0.79941 0.81619 0.78818 1.19830 1.20588 1.19040 1.20289 0.92750 0.88441 1.56036 0.91085 1.27602 1.09847 1.09054 1.07521 1.07166 0.77244 0.75882 0.74108 1.93521 1.71062 1.85927 1.45276 1.93531 1.70817 1.85126 1.44630 1.55449 1.56068 1.43965 1.26197 1.17837 0.78721 0.85449 0.81743 1.91046 1.63038 1.47553 1.32220 1.19032 1.00198 0.98707 0.94927 1.21186 0.98511 0.93298 0.96233 1.20848 0.96757 0.97850 0.98200 1.20264 0.99878 0.98328 0.90816 1.19753 0.95267 0.96513 0.90925 1.19730 0.95428 0.90208 0.88942 1.87578 1.75977 1.34590 1.21015 1.25805 0.93615 0.81679 0.89359 1.87390 1.49886 1.63643 1.21438 0.92139 0.88285 0.89586 0.74294 0.83699 0.83535 0.84136 0.89418 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.41 13.29 55.43 0.74 -24.68 16 2 C 0.08 2.19 5.46 -17.82 -0.10 2.09 16 3 Si 0.91 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.20 9.13 -34.44 -0.31 -15.52 16 8 H 0.07 1.96 7.71 -52.49 -0.40 1.55 16 9 C -0.40 -10.23 5.64 36.01 0.20 -10.03 16 10 S 2.55 56.22 5.03 -107.50 -0.54 55.68 16 11 O -0.97 -22.03 18.08 -57.54 -1.04 -23.07 16 12 O -0.95 -24.04 17.05 -64.76 -1.10 -25.14 16 13 N -1.06 -17.52 5.55 30.46 0.17 -17.35 16 14 C 0.58 10.36 7.50 -12.46 -0.09 10.27 16 15 O -0.47 -10.48 14.07 -20.67 -0.29 -10.77 16 16 C -0.12 -1.73 5.88 -104.88 -0.62 -2.35 16 17 C -0.07 -0.70 9.53 -39.17 -0.37 -1.07 16 18 C -0.12 -0.87 10.02 -39.65 -0.40 -1.27 16 19 C -0.07 -0.63 10.05 -39.40 -0.40 -1.02 16 20 C 0.02 0.23 7.14 -39.12 -0.28 -0.05 16 21 C 0.10 1.50 6.79 -38.56 -0.26 1.23 16 22 O -0.28 -4.23 10.57 -50.02 -0.53 -4.76 16 23 C 0.21 2.07 8.89 101.05 0.90 2.96 16 24 O -0.31 -3.44 11.41 -45.84 -0.52 -3.96 16 25 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.10 2.66 7.18 -51.92 -0.37 2.28 16 27 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 28 H 0.42 4.92 6.82 -34.47 -0.23 4.68 16 29 H 0.15 0.95 6.40 -52.49 -0.34 0.62 16 30 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -38.59 308.89 -7.81 -46.40 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -2.60 Total: 1.44 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.73 Total: -14.76 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.91 Total: -42.03 kcal Atomic # 8 Polarization: -64.22 SS G_CDS: -3.49 Total: -67.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 56.22 SS G_CDS: -0.54 Total: 55.68 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -38.59 -7.81 -46.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.433 kcal (2) G-P(sol) polarization free energy of solvation -38.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds