Wall clock time and date at job start Tue Mar 31 2020 04:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00274 * 2 1 4 4 H 1.48498 * 109.46830 * 269.99953 * 3 2 1 5 5 H 1.48495 * 109.47012 * 29.99850 * 3 2 1 6 6 H 1.48499 * 109.47108 * 149.99959 * 3 2 1 7 7 C 1.37883 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 359.97438 * 7 2 1 10 10 S 1.81401 * 109.46778 * 179.97438 * 9 7 2 11 11 O 1.42103 * 110.54327 * 68.37894 * 10 9 7 12 12 O 1.42092 * 110.54432 * 291.62440 * 10 9 7 13 13 N 1.65598 * 104.44939 * 179.97438 * 10 9 7 14 14 C 1.34786 * 119.99810 * 64.99892 * 13 10 9 15 15 O 1.21588 * 119.99987 * 359.72887 * 14 13 10 16 16 C 1.47546 * 119.99972 * 179.97438 * 14 13 10 17 17 C 1.39809 * 120.15528 * 359.72702 * 16 14 13 18 18 C 1.37751 * 119.97921 * 179.97438 * 17 16 14 19 19 C 1.38533 * 120.35795 * 0.02749 * 18 17 16 20 20 C 1.38434 * 120.37085 * 359.97194 * 19 18 17 21 21 C 1.39282 * 119.92143 * 359.74598 * 20 19 18 22 22 O 1.36210 * 108.71937 * 179.82059 * 21 20 19 23 23 C 1.43978 * 105.58601 * 343.08942 * 22 21 20 24 24 O 1.36546 * 131.49689 * 179.97438 * 20 19 18 25 25 H 0.97005 * 119.99519 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47058 * 60.00098 * 9 7 2 27 27 H 1.08999 * 109.46922 * 299.99837 * 9 7 2 28 28 H 0.96995 * 120.00638 * 245.00504 * 13 10 9 29 29 H 1.08000 * 120.00933 * 359.95267 * 17 16 14 30 30 H 1.08000 * 119.81969 * 180.02562 * 18 17 16 31 31 H 1.07994 * 119.81359 * 179.97438 * 19 18 17 32 32 H 1.09006 * 110.57216 * 268.33157 * 23 22 21 33 33 H 1.08994 * 110.70627 * 145.51414 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0017 10 16 2.4296 -3.8780 0.0014 11 8 3.1273 -3.9379 1.2379 12 8 3.1254 -3.9390 -1.2360 13 7 1.4792 -5.2341 0.0035 14 6 0.6873 -5.5036 -1.0534 15 8 0.6670 -4.7485 -2.0061 16 6 -0.1591 -6.7122 -1.0518 17 6 -0.1379 -7.5831 0.0417 18 6 -0.9299 -8.7101 0.0396 19 6 -1.7495 -8.9878 -1.0422 20 6 -1.7820 -8.1356 -2.1327 21 6 -0.9911 -6.9891 -2.1423 22 8 -1.1964 -6.3262 -3.3143 23 6 -1.8178 -7.2808 -4.1950 24 8 -2.4901 -8.1854 -3.2991 25 1 -0.4850 0.8401 0.0004 26 1 0.6239 -2.5575 -0.8880 27 1 0.6246 -2.5563 0.8920 28 1 1.4923 -5.8345 0.7652 29 1 0.4996 -7.3724 0.8877 30 1 -0.9118 -9.3808 0.8858 31 1 -2.3665 -9.8741 -1.0348 32 1 -1.0646 -7.8099 -4.7790 33 1 -2.5347 -6.7890 -4.8523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:00 Heat of formation + Delta-G solvation = -168.069336 kcal Electronic energy + Delta-G solvation = -23684.287251 eV Core-core repulsion = 19802.647122 eV Total energy + Delta-G solvation = -3881.640129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.32475 -41.24797 -38.69958 -38.11374 -37.36007 -37.10708 -35.73724 -35.44693 -32.03521 -31.13368 -31.05158 -26.86921 -25.92622 -25.52037 -23.99426 -22.70225 -20.98764 -19.88218 -19.27802 -19.00962 -18.58224 -18.14374 -17.95083 -17.54365 -17.12254 -16.62515 -16.28147 -16.08124 -15.92004 -15.52143 -15.20870 -14.77332 -14.52320 -14.17788 -14.05138 -13.81948 -13.66880 -13.50937 -13.29471 -13.24694 -13.14709 -12.79830 -12.75423 -12.56524 -12.13609 -11.97668 -11.85515 -11.47956 -11.11937 -10.81706 -10.09606 -9.20502 -8.44690 -6.64866 -0.80961 -0.51625 0.04409 1.30727 1.36025 1.39174 1.50495 1.52521 1.71186 2.28422 2.40459 2.51319 2.69402 2.89030 2.93579 3.30954 3.49411 3.72272 3.81199 3.86895 4.05892 4.13552 4.19360 4.39540 4.60440 4.70930 4.73474 4.86994 5.14709 5.20241 5.26285 5.39754 5.63464 5.68716 5.98565 6.37097 6.45818 7.07284 8.68554 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.020272 B = 0.003981 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.903368 B = 7031.988790 C = 7728.753515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.570 4.570 8 H 0.071 0.929 9 C -0.422 4.422 10 S 2.602 3.398 11 O -0.971 6.971 12 O -0.984 6.984 13 N -1.036 6.036 14 C 0.573 3.427 15 O -0.524 6.524 16 C -0.152 4.152 17 C -0.067 4.067 18 C -0.098 4.098 19 C -0.057 4.057 20 C 0.006 3.994 21 C 0.069 3.931 22 O -0.322 6.322 23 C 0.200 3.800 24 O -0.313 6.313 25 H 0.275 0.725 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.446 0.554 29 H 0.176 0.824 30 H 0.198 0.802 31 H 0.177 0.823 32 H 0.107 0.893 33 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -22.038 0.442 22.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.609 4.609 8 H 0.089 0.911 9 C -0.557 4.557 10 S 2.702 3.298 11 O -0.961 6.961 12 O -0.974 6.974 13 N -0.802 5.802 14 C 0.363 3.637 15 O -0.398 6.398 16 C -0.158 4.158 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.075 4.075 20 C -0.038 4.038 21 C 0.022 3.978 22 O -0.237 6.237 23 C 0.090 3.910 24 O -0.230 6.230 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.287 0.713 29 H 0.193 0.807 30 H 0.215 0.785 31 H 0.194 0.806 32 H 0.124 0.876 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.679 -21.346 -0.415 22.092 hybrid contribution -0.382 1.208 -0.316 1.306 sum -6.061 -20.138 -0.731 21.043 Atomic orbital electron populations 1.70056 1.07780 1.29031 1.47720 1.25930 0.96001 1.03423 0.92588 0.85369 0.79070 0.77143 0.79246 1.19257 1.18987 1.17982 1.20752 0.93206 0.90289 1.56620 0.91131 1.27666 1.10757 1.10902 1.06325 1.05413 0.75997 0.75384 0.73048 1.93506 1.71090 1.86240 1.45284 1.93487 1.71658 1.85805 1.46456 1.54822 1.55335 1.42819 1.27267 1.18586 0.78311 0.86185 0.80660 1.91013 1.64793 1.49724 1.34294 1.19001 1.01193 0.98342 0.97256 1.21648 0.98784 0.92841 0.95283 1.21446 0.94257 0.96979 0.98825 1.20894 0.99061 0.98215 0.89329 1.20106 0.95374 0.96418 0.91945 1.20140 0.96966 0.91641 0.89061 1.87509 1.76849 1.36982 1.22357 1.26189 0.94606 0.81421 0.88825 1.87351 1.50240 1.63762 1.21603 0.91616 0.90820 0.89390 0.71348 0.80694 0.78537 0.80569 0.87572 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.13 13.29 21.45 0.28 -53.85 16 2 C 0.02 1.37 5.46 84.66 0.46 1.83 16 3 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.57 -33.34 9.13 25.60 0.23 -33.10 16 8 H 0.07 3.99 7.71 -2.91 -0.02 3.97 16 9 C -0.42 -22.36 5.64 71.24 0.40 -21.96 16 10 S 2.60 116.53 5.03 -56.49 -0.28 116.24 16 11 O -0.97 -43.62 18.08 -127.65 -2.31 -45.92 16 12 O -0.98 -51.17 17.05 -120.75 -2.06 -53.22 16 13 N -1.04 -34.24 5.55 -175.80 -0.98 -35.21 16 14 C 0.57 21.23 7.50 86.70 0.65 21.88 16 15 O -0.52 -25.07 14.07 20.82 0.29 -24.77 16 16 C -0.15 -4.23 5.88 -20.03 -0.12 -4.35 16 17 C -0.07 -1.06 9.53 22.53 0.21 -0.85 16 18 C -0.10 -0.93 10.02 22.22 0.22 -0.71 16 19 C -0.06 -0.72 10.05 22.39 0.22 -0.50 16 20 C 0.01 0.13 7.14 22.57 0.16 0.29 16 21 C 0.07 2.01 6.79 22.93 0.16 2.16 16 22 O -0.32 -10.45 10.57 -67.65 -0.71 -11.16 16 23 C 0.20 4.08 8.89 113.37 1.01 5.09 16 24 O -0.31 -6.78 11.41 -76.59 -0.87 -7.65 16 25 H 0.27 15.09 8.31 -92.70 -0.77 14.32 16 26 H 0.07 4.24 7.18 -2.39 -0.02 4.23 16 27 H 0.09 4.48 8.14 -2.39 -0.02 4.46 16 28 H 0.45 9.57 6.82 -96.75 -0.66 8.91 16 29 H 0.18 1.53 6.40 -2.91 -0.02 1.51 16 30 H 0.20 0.02 8.06 -2.91 -0.02 0.00 16 31 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.11 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -89.09 308.89 -0.47 -89.55 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.53 Total: 10.25 kcal Atomic # 6 Polarization: -33.82 SS G_CDS: 3.62 Total: -30.20 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -0.69 Total: -89.06 kcal Atomic # 8 Polarization: -137.07 SS G_CDS: -5.66 Total: -142.73 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 116.53 SS G_CDS: -0.28 Total: 116.24 kcal Total: -89.09 -0.47 -89.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.517 kcal (2) G-P(sol) polarization free energy of solvation -89.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds