Wall clock time and date at job start Tue Mar 31 2020 04:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47702 * 41.00937 * 3 2 1 5 5 C 1.36940 * 120.00088 * 273.48794 * 4 3 2 6 6 H 1.07994 * 120.00032 * 186.61711 * 5 4 3 7 7 C 1.38811 * 119.99563 * 6.61227 * 5 4 3 8 8 N 1.31616 * 120.00438 * 25.15053 * 7 5 4 9 9 Si 1.86808 * 119.99860 * 205.14612 * 7 5 4 10 10 H 1.48505 * 109.46665 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46761 * 120.00033 * 9 7 5 12 12 H 1.48492 * 109.47262 * 240.00596 * 9 7 5 13 13 S 1.65599 * 120.00191 * 93.47813 * 4 3 2 14 14 O 1.42101 * 106.40046 * 336.46790 * 13 4 3 15 15 O 1.42098 * 106.40532 * 203.54255 * 13 4 3 16 16 C 1.76203 * 107.21553 * 90.00242 * 13 4 3 17 17 C 1.38181 * 120.00092 * 115.25322 * 16 13 4 18 18 C 1.38210 * 120.07882 * 180.23557 * 17 16 13 19 19 C 1.38516 * 120.08604 * 359.79056 * 18 17 16 20 20 F 1.35097 * 119.99745 * 179.97438 * 19 18 17 21 21 C 1.38340 * 120.00582 * 359.95432 * 19 18 17 22 22 C 1.38716 * 119.91973 * 0.02662 * 21 19 18 23 23 O 1.35896 * 120.04465 * 179.97438 * 22 21 19 24 24 C 1.42898 * 116.99728 * 0.02562 * 23 22 21 25 25 H 4.40646 * 5.51435 * 180.02562 * 4 1 2 26 26 H 1.09007 * 109.47033 * 281.00727 * 3 2 1 27 27 H 1.09005 * 109.47022 * 161.01080 * 3 2 1 28 28 H 0.97000 * 119.99965 * 179.97438 * 8 7 5 29 29 H 1.08005 * 119.96214 * 0.02562 * 17 16 13 30 30 H 1.08001 * 119.95686 * 179.76425 * 18 17 16 31 31 H 1.07997 * 120.04159 * 180.02562 * 21 19 18 32 32 H 1.09004 * 109.46989 * 180.02562 * 24 23 22 33 33 H 1.08996 * 109.47934 * 59.99671 * 24 23 22 34 34 H 1.09009 * 109.47166 * 299.99576 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.0413 -0.9063 5 6 3.2957 -2.3233 -0.4524 6 1 3.7556 -3.0669 -1.0864 7 6 2.8678 -2.6669 0.8226 8 7 1.9063 -1.9795 1.4016 9 14 3.6565 -4.1051 1.7166 10 1 4.7056 -4.7078 0.8556 11 1 4.2698 -3.6255 2.9812 12 1 2.6216 -5.1247 2.0238 13 16 3.4928 -0.6691 -2.4797 14 8 2.7418 0.4946 -2.7975 15 8 3.3929 -1.8827 -3.2120 16 6 5.1893 -0.1955 -2.5306 17 6 6.0997 -0.9616 -3.2332 18 6 7.4316 -0.5943 -3.2701 19 6 7.8564 0.5450 -2.6066 20 9 9.1588 0.9020 -2.6435 21 6 6.9470 1.3174 -1.9065 22 6 5.6101 0.9492 -1.8696 23 8 4.7147 1.7059 -1.1822 24 6 5.2196 2.8678 -0.5211 25 1 -1.0499 -0.0001 -0.0004 26 1 3.0094 -0.1954 1.0088 27 1 3.0089 0.9726 -0.3344 28 1 1.6070 -2.2199 2.2925 29 1 5.7707 -1.8503 -3.7513 30 1 8.1421 -1.1966 -3.8167 31 1 7.2775 2.2060 -1.3893 32 1 4.4031 3.3795 -0.0115 33 1 5.6669 3.5380 -1.2551 34 1 5.9740 2.5721 0.2081 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851787066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:31 Heat of formation + Delta-G solvation = -43.021315 kcal Electronic energy + Delta-G solvation = -24640.856295 eV Core-core repulsion = 20777.011445 eV Total energy + Delta-G solvation = -3863.844850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -49.08830 -40.08700 -37.32770 -36.13745 -36.05067 -34.78102 -31.70849 -30.97635 -30.84819 -30.25313 -27.33925 -26.38103 -23.74681 -23.01140 -22.53355 -18.90439 -18.50901 -17.90004 -17.45566 -17.06751 -16.48073 -16.19203 -15.92862 -15.80882 -15.43384 -14.71398 -14.54987 -14.40146 -14.28390 -13.52651 -13.30753 -13.05976 -12.83650 -12.57387 -12.28394 -11.78108 -11.56636 -11.49158 -11.21613 -11.06521 -11.04264 -10.91903 -10.85786 -10.42767 -10.27477 -10.11682 -9.55397 -9.11842 -9.00855 -8.63603 -8.43526 -8.09117 -6.23578 -3.77653 0.82393 1.29441 1.43576 3.10552 3.20113 3.29487 3.33266 3.38472 3.89797 4.10243 4.24176 4.41862 4.57048 4.60566 4.74230 4.86943 4.93445 5.06996 5.12084 5.14690 5.46230 5.49285 5.60760 5.78117 5.80963 5.93111 6.15016 6.19661 6.35714 6.65824 6.89640 7.13257 7.17444 7.37764 7.57914 8.39180 8.92308 9.13606 9.29320 10.73140 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.006367 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.741559 B = 4396.573633 C = 4952.683393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.090 4.090 3 C 0.248 3.752 4 N -0.830 5.830 5 C -0.319 4.319 6 H 0.112 0.888 7 C 0.046 3.954 8 N -0.847 5.847 9 Si 0.900 3.100 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.283 1.283 13 S 2.654 3.346 14 O -0.966 6.966 15 O -0.968 6.968 16 C -0.711 4.711 17 C 0.040 3.960 18 C -0.215 4.215 19 C 0.173 3.827 20 F -0.136 7.136 21 C -0.269 4.269 22 C 0.249 3.751 23 O -0.296 6.296 24 C 0.022 3.978 25 H 0.196 0.804 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 7.451 -2.323 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.093 4.093 3 C 0.123 3.877 4 N -0.661 5.661 5 C -0.452 4.452 6 H 0.130 0.870 7 C -0.161 4.161 8 N -0.485 5.485 9 Si 0.727 3.273 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.209 1.209 13 S 2.742 3.258 14 O -0.955 6.955 15 O -0.958 6.958 16 C -0.791 4.791 17 C 0.021 3.979 18 C -0.235 4.235 19 C 0.154 3.846 20 F -0.115 7.115 21 C -0.289 4.289 22 C 0.200 3.800 23 O -0.208 6.208 24 C -0.073 4.073 25 H 0.213 0.787 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.078 0.922 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.446 7.486 -2.903 11.654 hybrid contribution 1.427 -0.447 1.092 1.851 sum 9.873 7.039 -1.812 12.260 Atomic orbital electron populations 1.24141 0.95283 1.05428 1.04667 1.23023 0.94221 0.95558 0.96515 1.17998 0.84496 0.88511 0.96709 1.53195 1.70217 1.13692 1.28998 1.19333 1.40858 0.84567 1.00427 0.87042 1.25036 0.95331 0.98720 0.97047 1.70218 1.21928 1.41089 1.15301 0.86309 0.79795 0.81519 0.79708 1.19251 1.20750 1.20927 1.03951 0.74870 0.72960 0.74017 1.93507 1.68546 1.50219 1.83274 1.93452 1.86304 1.45219 1.70808 1.31440 1.31352 1.04044 1.12254 1.20697 0.90765 0.95917 0.90480 1.21129 0.97643 0.98542 1.06166 1.17522 0.77508 0.93866 0.95746 1.91502 1.33843 1.91529 1.94584 1.21112 0.92948 1.05057 1.09768 1.18032 0.87311 0.87990 0.86633 1.86257 1.34564 1.37422 1.62521 1.23220 1.01895 0.85599 0.96572 0.78686 0.88036 0.90521 0.92251 0.82616 0.84148 0.83855 0.87228 0.92230 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 66. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.29 19.25 29.55 0.57 -5.72 16 2 C -0.09 -2.21 11.23 -37.13 -0.42 -2.62 16 3 C 0.25 5.72 4.93 -6.83 -0.03 5.68 16 4 N -0.83 -20.08 2.88 -62.77 -0.18 -20.26 16 5 C -0.32 -8.18 9.38 -15.06 -0.14 -8.32 16 6 H 0.11 2.82 7.39 -52.49 -0.39 2.43 16 7 C 0.05 1.16 4.93 -17.43 -0.09 1.07 16 8 N -0.85 -21.87 8.95 55.49 0.50 -21.37 16 9 Si 0.90 19.57 29.62 -169.99 -5.04 14.54 16 10 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 S 2.65 60.08 5.20 -107.50 -0.56 59.52 16 14 O -0.97 -23.18 16.30 -62.50 -1.02 -24.20 16 15 O -0.97 -23.53 15.84 -57.17 -0.91 -24.43 16 16 C -0.71 -13.38 5.92 -39.42 -0.23 -13.61 16 17 C 0.04 0.66 9.54 -39.61 -0.38 0.28 16 18 C -0.22 -3.03 10.02 -39.49 -0.40 -3.42 16 19 C 0.17 2.46 7.30 -39.44 -0.29 2.17 16 20 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 21 C -0.27 -3.83 9.02 -39.37 -0.35 -4.19 16 22 C 0.25 4.22 6.63 -39.22 -0.26 3.96 16 23 O -0.30 -4.84 6.44 -29.18 -0.19 -5.03 16 24 C 0.02 0.23 9.81 101.05 0.99 1.22 16 25 H 0.20 3.66 7.80 -54.10 -0.42 3.24 16 26 H 0.10 2.38 6.42 -51.93 -0.33 2.04 16 27 H 0.08 1.58 4.83 -51.93 -0.25 1.33 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.16 2.36 7.33 -52.48 -0.38 1.97 16 30 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16 32 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 34 H 0.06 0.56 7.66 -51.92 -0.40 0.16 16 LS Contribution 311.71 15.07 4.70 4.70 Total: -1.00 -31.57 311.71 -6.57 -38.14 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.89 Total: 3.66 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -1.03 Total: -23.49 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.32 Total: -41.63 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -2.11 Total: -53.66 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.04 Total: 14.54 kcal Atomic # 16 Polarization: 60.08 SS G_CDS: -0.56 Total: 59.52 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.57 -6.57 -38.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851787066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.879 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds