Wall clock time and date at job start Tue Mar 31 2020 04:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40086 * 126.03487 * 2 1 4 4 C 1.30837 * 108.20764 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.90248 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47236 * 4.97014 * 5 4 3 7 7 F 1.39898 * 109.47292 * 124.97482 * 5 4 3 8 8 F 1.39903 * 109.47142 * 244.97566 * 5 4 3 9 9 C 1.39879 * 108.19896 * 359.77742 * 4 3 2 10 10 C 1.34944 * 126.03779 * 180.02562 * 2 1 3 11 11 S 1.76199 * 126.12733 * 359.94953 * 10 2 1 12 12 O 1.42096 * 106.40321 * 336.45583 * 11 10 2 13 13 O 1.42108 * 106.39883 * 203.53592 * 11 10 2 14 14 N 1.65597 * 107.22117 * 89.99741 * 11 10 2 15 15 C 1.46499 * 119.99926 * 64.72196 * 14 11 10 16 16 C 1.50700 * 109.46995 * 165.27893 * 15 14 11 17 17 H 1.07999 * 120.00045 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99912 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47379 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47318 * 120.00097 * 20 18 16 23 23 H 1.48504 * 109.47135 * 240.00131 * 20 18 16 24 24 H 1.08997 * 109.47322 * 269.97736 * 1 2 3 25 25 H 1.09002 * 109.47110 * 29.98013 * 1 2 3 26 26 H 1.09004 * 109.46828 * 149.97901 * 1 2 3 27 27 H 1.07991 * 126.03925 * 180.23667 * 9 4 3 28 28 H 0.97001 * 120.00224 * 245.00409 * 14 11 10 29 29 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 30 30 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 31 31 H 0.96994 * 120.00181 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 4.7496 1.6238 -0.0002 6 9 4.3482 2.9590 0.1151 7 9 5.5731 1.2894 1.0801 8 9 5.4554 1.4506 -1.1957 9 6 3.5437 -0.6665 0.0042 10 6 2.2589 -1.0912 -0.0005 11 16 1.7193 -2.7685 0.0000 12 8 0.4071 -2.7677 0.5455 13 8 2.7866 -3.5332 0.5437 14 7 1.5679 -3.2353 -1.5816 15 6 2.7514 -3.3006 -2.4425 16 6 2.4226 -4.0790 -3.6903 17 1 1.4311 -4.4841 -3.8284 18 6 3.3876 -4.2739 -4.6557 19 7 4.5950 -3.7800 -4.4877 20 14 2.9803 -5.2393 -6.2020 21 1 1.5647 -5.6849 -6.1489 22 1 3.1834 -4.3756 -7.3928 23 1 3.8690 -6.4255 -6.2935 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.4211 -1.2962 0.0086 28 1 0.6950 -3.4616 -1.9391 29 1 3.0589 -2.2908 -2.7146 30 1 3.5623 -3.7958 -1.9085 31 1 5.2737 -3.9168 -5.1669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859136996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:15 Heat of formation + Delta-G solvation = -142.217167 kcal Electronic energy + Delta-G solvation = -24365.045541 eV Core-core repulsion = 19974.962458 eV Total energy + Delta-G solvation = -4390.083084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.20874 -47.73766 -47.69322 -41.62443 -37.17521 -35.74345 -34.87197 -33.95265 -32.30732 -30.91567 -28.52779 -26.91700 -25.35768 -22.70045 -22.61494 -21.31467 -19.45654 -18.59305 -18.39487 -18.32198 -17.66926 -16.76870 -16.31487 -15.80293 -15.62159 -15.47743 -14.72640 -14.56039 -14.48621 -14.14361 -14.11543 -13.83959 -13.82696 -13.68519 -13.10433 -13.05748 -12.82121 -12.51758 -12.31684 -12.05518 -11.94736 -11.80669 -11.76807 -11.13606 -11.03267 -10.83115 -10.29470 -10.16152 -9.55704 -9.15568 -9.10602 -8.42109 -6.26905 -4.33046 0.44034 0.97271 1.71309 1.86686 2.66563 3.19226 3.25149 3.28348 3.33051 3.50492 3.78799 3.81597 4.26360 4.29069 4.39182 4.62719 4.98730 4.99617 5.10217 5.15068 5.28957 5.39816 5.92036 6.16828 6.33581 6.88296 7.11904 7.15785 7.53514 7.69307 8.01293 8.70406 9.32759 10.83215 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.005073 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.124318 B = 5518.196652 C = 6789.151587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.288 5.288 3 N -0.206 5.206 4 C -0.040 4.040 5 C 0.560 3.440 6 F -0.168 7.168 7 F -0.165 7.165 8 F -0.160 7.160 9 C -0.107 4.107 10 C -0.476 4.476 11 S 2.703 3.297 12 O -0.967 6.967 13 O -0.934 6.934 14 N -1.092 6.092 15 C 0.242 3.758 16 C -0.533 4.533 17 H 0.068 0.932 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.179 0.821 28 H 0.414 0.586 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.664 8.869 8.454 13.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.074 5.074 3 N -0.035 5.035 4 C -0.204 4.204 5 C 0.504 3.496 6 F -0.149 7.149 7 F -0.146 7.146 8 F -0.142 7.142 9 C -0.138 4.138 10 C -0.681 4.681 11 S 2.783 3.217 12 O -0.957 6.957 13 O -0.923 6.923 14 N -0.857 5.857 15 C 0.119 3.881 16 C -0.573 4.573 17 H 0.086 0.914 18 C -0.141 4.141 19 N -0.524 5.524 20 Si 0.732 3.268 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 H 0.114 0.886 25 H 0.120 0.880 26 H 0.126 0.874 27 H 0.197 0.803 28 H 0.250 0.750 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.327 9.501 9.192 14.253 hybrid contribution 0.490 -0.336 -1.409 1.529 sum -4.837 9.165 7.783 12.960 Atomic orbital electron populations 1.22469 0.71547 1.06146 1.05553 1.48231 1.06871 1.01217 1.51061 1.77167 1.00129 1.09118 1.17046 1.22148 0.92991 0.94717 1.10578 1.16747 0.81010 0.77484 0.74389 1.93225 1.90553 1.35416 1.95717 1.93244 1.73663 1.92269 1.55469 1.93291 1.79700 1.95144 1.46018 1.21316 0.97030 0.92729 1.02715 1.34298 0.99417 1.17818 1.16564 1.02063 0.73496 0.72307 0.73838 1.93550 1.37700 1.86556 1.77876 1.93640 1.57025 1.64436 1.77167 1.55482 1.18889 1.81135 1.30147 1.19232 0.81255 0.97748 0.89862 1.21159 0.98385 1.35343 1.02429 0.91418 1.24979 0.94785 0.95661 0.98696 1.69936 1.02951 1.44331 1.35133 0.86337 0.78611 0.79622 0.82225 1.19586 1.20822 1.20681 0.88592 0.88013 0.87422 0.80313 0.75004 0.95770 0.93865 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 10.54 59.85 0.63 1.50 16 2 N -0.29 -4.24 4.01 -67.26 -0.27 -4.51 16 3 N -0.21 -3.25 12.35 33.67 0.42 -2.84 16 4 C -0.04 -0.63 6.51 -82.40 -0.54 -1.17 16 5 C 0.56 7.97 3.51 36.00 0.13 8.09 16 6 F -0.17 -2.33 17.14 2.25 0.04 -2.29 16 7 F -0.17 -2.22 17.30 2.25 0.04 -2.18 16 8 F -0.16 -2.38 17.30 2.25 0.04 -2.34 16 9 C -0.11 -1.74 10.48 -40.01 -0.42 -2.16 16 10 C -0.48 -7.64 6.97 -17.22 -0.12 -7.76 16 11 S 2.70 44.64 5.69 -107.50 -0.61 44.03 16 12 O -0.97 -15.39 15.78 -57.17 -0.90 -16.29 16 13 O -0.93 -18.17 17.33 -57.17 -0.99 -19.17 16 14 N -1.09 -19.58 5.99 -11.66 -0.07 -19.65 16 15 C 0.24 5.55 5.97 -5.19 -0.03 5.52 16 16 C -0.53 -13.47 9.27 -34.44 -0.32 -13.79 16 17 H 0.07 1.62 7.65 -52.49 -0.40 1.22 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 20 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.11 1.06 6.68 -51.93 -0.35 0.71 16 27 H 0.18 2.68 8.06 -52.49 -0.42 2.26 16 28 H 0.41 6.52 8.54 -34.47 -0.29 6.22 16 29 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 1.07 7.76 -51.93 -0.40 0.67 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 307.16 15.07 4.63 4.63 Total: -1.00 -30.89 307.16 -5.01 -35.89 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -2.27 Total: 1.58 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.77 Total: -8.22 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.81 Total: -50.64 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -1.89 Total: -35.46 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.12 Total: -6.81 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.61 Total: 44.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.89 -5.01 -35.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859136996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.326 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds