Wall clock time and date at job start Tue Mar 31 2020 04:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40086 * 126.03487 * 2 1 4 4 C 1.30837 * 108.20764 * 180.02562 * 3 2 1 5 5 C 1.50694 * 125.90248 * 180.02562 * 4 3 2 6 6 F 1.39903 * 109.47236 * 4.97014 * 5 4 3 7 7 F 1.39898 * 109.47292 * 124.97482 * 5 4 3 8 8 F 1.39903 * 109.47142 * 244.97566 * 5 4 3 9 9 C 1.39879 * 108.19896 * 359.77742 * 4 3 2 10 10 C 1.34944 * 126.03779 * 180.02562 * 2 1 3 11 11 S 1.76199 * 126.12733 * 359.94953 * 10 2 1 12 12 O 1.42096 * 106.40321 * 336.45583 * 11 10 2 13 13 O 1.42108 * 106.39883 * 203.53592 * 11 10 2 14 14 N 1.65597 * 107.22117 * 89.99741 * 11 10 2 15 15 C 1.46499 * 119.99926 * 64.72196 * 14 11 10 16 16 C 1.50700 * 109.46995 * 165.27893 * 15 14 11 17 17 H 1.07999 * 120.00045 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99912 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47379 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47318 * 120.00097 * 20 18 16 23 23 H 1.48504 * 109.47135 * 240.00131 * 20 18 16 24 24 H 1.08997 * 109.47322 * 269.97736 * 1 2 3 25 25 H 1.09002 * 109.47110 * 29.98013 * 1 2 3 26 26 H 1.09004 * 109.46828 * 149.97901 * 1 2 3 27 27 H 1.07991 * 126.03925 * 180.23667 * 9 4 3 28 28 H 0.97001 * 120.00224 * 245.00409 * 14 11 10 29 29 H 1.09007 * 109.47241 * 285.27714 * 15 14 11 30 30 H 1.08995 * 109.47308 * 45.27753 * 15 14 11 31 31 H 0.96994 * 120.00181 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7323 -0.0006 5 6 4.7496 1.6238 -0.0002 6 9 4.3482 2.9590 0.1151 7 9 5.5731 1.2894 1.0801 8 9 5.4554 1.4506 -1.1957 9 6 3.5437 -0.6665 0.0042 10 6 2.2589 -1.0912 -0.0005 11 16 1.7193 -2.7685 0.0000 12 8 0.4071 -2.7677 0.5455 13 8 2.7866 -3.5332 0.5437 14 7 1.5679 -3.2353 -1.5816 15 6 2.7514 -3.3006 -2.4425 16 6 2.4226 -4.0790 -3.6903 17 1 1.4311 -4.4841 -3.8284 18 6 3.3876 -4.2739 -4.6557 19 7 4.5950 -3.7800 -4.4877 20 14 2.9803 -5.2393 -6.2020 21 1 1.5647 -5.6849 -6.1489 22 1 3.1834 -4.3756 -7.3928 23 1 3.8690 -6.4255 -6.2935 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 4.4211 -1.2962 0.0086 28 1 0.6950 -3.4616 -1.9391 29 1 3.0589 -2.2908 -2.7146 30 1 3.5623 -3.7958 -1.9085 31 1 5.2737 -3.9168 -5.1669 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859136996.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:14 Heat of formation + Delta-G solvation = -165.490960 kcal Electronic energy + Delta-G solvation = -24366.054769 eV Core-core repulsion = 19974.962458 eV Total energy + Delta-G solvation = -4391.092311 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.34757 -48.85505 -48.84859 -42.82289 -38.58089 -37.17693 -36.57308 -35.05772 -34.17369 -32.13980 -29.58387 -28.78449 -26.43577 -24.54918 -23.87772 -22.50190 -20.77677 -19.75003 -19.68938 -19.52969 -19.19095 -17.97862 -17.85931 -17.27669 -16.92260 -16.83458 -16.37393 -15.68997 -15.62614 -15.36318 -15.25681 -15.22477 -14.97602 -14.96316 -14.62435 -14.14492 -14.08168 -13.99356 -13.72207 -13.61872 -13.40950 -13.14144 -13.04918 -12.78849 -12.53639 -12.38533 -12.10773 -11.42467 -11.39289 -10.89949 -10.32303 -10.23473 -8.23967 -6.36050 -0.93665 -0.26529 0.59712 0.63054 1.46274 1.48138 1.52696 1.59570 1.89709 2.35123 2.42169 2.46476 2.61933 3.11557 3.14586 3.18279 3.46799 3.77253 4.11338 4.18897 4.24916 4.50453 4.55645 4.71902 5.21350 5.24876 5.28204 5.68188 5.74513 5.92630 6.25375 6.77773 7.33989 8.87014 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.013185 B = 0.005073 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.124318 B = 5518.196652 C = 6789.151587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.280 5.280 3 N -0.211 5.211 4 C -0.050 4.050 5 C 0.567 3.433 6 F -0.164 7.164 7 F -0.160 7.160 8 F -0.165 7.165 9 C -0.124 4.124 10 C -0.484 4.484 11 S 2.731 3.269 12 O -0.955 6.955 13 O -0.963 6.963 14 N -1.089 6.089 15 C 0.253 3.747 16 C -0.547 4.547 17 H 0.079 0.921 18 C 0.009 3.991 19 N -0.924 5.924 20 Si 0.970 3.030 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.282 1.282 24 H 0.117 0.883 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.182 0.818 28 H 0.425 0.575 29 H 0.012 0.988 30 H 0.020 0.980 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.264 8.985 8.277 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.066 5.066 3 N -0.041 5.041 4 C -0.214 4.214 5 C 0.511 3.489 6 F -0.145 7.145 7 F -0.141 7.141 8 F -0.146 7.146 9 C -0.155 4.155 10 C -0.692 4.692 11 S 2.812 3.188 12 O -0.945 6.945 13 O -0.953 6.953 14 N -0.853 5.853 15 C 0.129 3.871 16 C -0.586 4.586 17 H 0.098 0.902 18 C -0.192 4.192 19 N -0.563 5.563 20 Si 0.795 3.205 21 H -0.182 1.182 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.133 0.867 27 H 0.200 0.800 28 H 0.263 0.737 29 H 0.030 0.970 30 H 0.038 0.962 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.974 9.604 9.022 14.909 hybrid contribution 0.904 -0.316 -1.268 1.589 sum -6.070 9.288 7.754 13.537 Atomic orbital electron populations 1.22987 0.69201 1.07850 1.07477 1.48650 1.08104 1.00402 1.49466 1.77130 1.00231 1.09585 1.17181 1.22311 0.93513 0.94695 1.10860 1.16572 0.80628 0.77412 0.74327 1.93230 1.90525 1.35081 1.95694 1.93253 1.73454 1.92249 1.55175 1.93281 1.79760 1.95189 1.46405 1.21524 0.97517 0.93325 1.03155 1.34046 0.99788 1.17746 1.17574 1.01131 0.72956 0.71920 0.72805 1.93559 1.37045 1.86591 1.77274 1.93605 1.58236 1.65876 1.77543 1.55236 1.18127 1.81880 1.30102 1.18797 0.82218 0.96412 0.89714 1.21619 0.98877 1.35067 1.03080 0.90244 1.25868 0.94674 0.96685 1.01941 1.70054 1.04006 1.45919 1.36306 0.85314 0.78875 0.77994 0.78302 1.18210 1.20686 1.20747 0.86506 0.85458 0.86724 0.80044 0.73720 0.97016 0.96190 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.14 10.54 127.77 1.35 2.49 16 2 N -0.28 -7.78 4.01 -366.70 -1.47 -9.25 16 3 N -0.21 -6.41 12.35 -47.38 -0.59 -6.99 16 4 C -0.05 -1.56 6.51 43.10 0.28 -1.28 16 5 C 0.57 15.85 3.51 71.23 0.25 16.10 16 6 F -0.16 -4.40 17.14 44.97 0.77 -3.63 16 7 F -0.16 -4.22 17.30 44.97 0.78 -3.44 16 8 F -0.17 -4.88 17.30 44.97 0.78 -4.10 16 9 C -0.12 -4.03 10.48 21.99 0.23 -3.80 16 10 C -0.48 -15.14 6.97 83.54 0.58 -14.56 16 11 S 2.73 87.71 5.69 -56.49 -0.32 87.39 16 12 O -0.95 -28.39 15.78 -128.00 -2.02 -30.41 16 13 O -0.96 -37.44 17.33 -128.00 -2.22 -39.66 16 14 N -1.09 -38.22 5.99 -190.79 -1.14 -39.36 16 15 C 0.25 11.69 5.97 85.63 0.51 12.20 16 16 C -0.55 -27.36 9.27 25.60 0.24 -27.12 16 17 H 0.08 3.68 7.65 -2.91 -0.02 3.66 16 18 C 0.01 0.45 5.46 84.66 0.46 0.91 16 19 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 20 Si 0.97 40.54 29.54 68.60 2.03 42.57 16 21 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 24 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.11 1.95 6.68 -2.38 -0.02 1.93 16 27 H 0.18 5.59 8.06 -2.92 -0.02 5.57 16 28 H 0.43 12.75 8.54 -96.74 -0.83 11.92 16 29 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.02 1.02 7.76 -2.39 -0.02 1.00 16 31 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -64.28 307.16 1.17 -63.11 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.39 Total: 9.95 kcal Atomic # 6 Polarization: -18.95 SS G_CDS: 3.90 Total: -15.05 kcal Atomic # 7 Polarization: -103.80 SS G_CDS: -2.91 Total: -106.72 kcal Atomic # 8 Polarization: -65.83 SS G_CDS: -4.24 Total: -70.07 kcal Atomic # 9 Polarization: -13.50 SS G_CDS: 2.33 Total: -11.17 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Atomic # 16 Polarization: 87.71 SS G_CDS: -0.32 Total: 87.39 kcal Total: -64.28 1.17 -63.11 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859136996.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.377 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds