Wall clock time and date at job start Tue Mar 31 2020 04:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86805 * 119.99737 * 2 1 4 4 H 1.48497 * 109.47108 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47015 * 300.00209 * 3 2 1 6 6 H 1.48500 * 109.46858 * 59.99879 * 3 2 1 7 7 C 1.38949 * 120.00524 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99723 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99580 * 179.97438 * 9 7 2 11 11 O 1.21285 * 120.00355 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99566 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.46859 * 180.02562 * 12 10 9 14 14 C 1.34230 * 116.99836 * 180.02562 * 13 12 10 15 15 O 1.20833 * 119.99930 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00262 * 180.27336 * 14 13 12 17 17 C 1.50693 * 109.47486 * 179.72204 * 16 14 13 18 18 C 1.38283 * 119.94004 * 269.72633 * 17 16 14 19 19 C 1.38152 * 120.07792 * 179.72396 * 18 17 16 20 20 C 1.38712 * 119.95539 * 0.54884 * 19 18 17 21 21 O 1.35922 * 120.05692 * 179.70611 * 20 19 18 22 22 C 1.38812 * 119.87878 * 359.72432 * 20 19 18 23 23 Cl 1.73597 * 120.03596 * 179.97438 * 22 20 19 24 24 C 1.38249 * 119.94505 * 89.99869 * 17 16 14 25 25 H 0.96995 * 120.00385 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99596 * 0.02562 * 9 7 2 27 27 H 1.08998 * 109.47259 * 60.00127 * 12 10 9 28 28 H 1.09004 * 109.46840 * 299.99907 * 12 10 9 29 29 H 1.09004 * 109.46801 * 299.72165 * 16 14 13 30 30 H 1.09000 * 109.47461 * 59.71633 * 16 14 13 31 31 H 1.08003 * 119.95730 * 359.97438 * 18 17 16 32 32 H 1.08002 * 120.02242 * 180.27071 * 19 18 17 33 33 H 0.96709 * 113.99716 * 270.01531 * 21 20 19 34 34 H 1.07998 * 119.97383 * 359.97438 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8892 2.3965 1.2125 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3235 -2.3906 0.0005 10 6 1.9975 -3.5577 0.0005 11 8 3.2104 -3.5577 0.0010 12 6 1.2441 -4.8629 0.0000 13 8 2.1877 -5.9665 0.0007 14 6 1.6748 -7.2069 -0.0002 15 8 0.4769 -7.3652 -0.0012 16 6 2.5927 -8.4019 0.0067 17 6 1.7721 -9.6658 0.0110 18 6 1.3990 -10.2424 1.2112 19 6 0.6418 -11.3979 1.2185 20 6 0.2651 -11.9866 0.0203 21 8 -0.4748 -13.1268 0.0251 22 6 0.6453 -11.4095 -1.1835 23 17 0.1766 -12.1432 -2.6853 24 6 1.3982 -10.2500 -1.1850 25 1 -0.4850 0.8400 0.0004 26 1 0.3535 -2.3906 -0.0002 27 1 0.6178 -4.9205 -0.8903 28 1 0.6171 -4.9208 0.8897 29 1 3.2230 -8.3810 -0.8824 30 1 3.2202 -8.3731 0.8975 31 1 1.6965 -9.7865 2.1440 32 1 0.3473 -11.8450 2.1564 33 1 0.0522 -13.9377 0.0300 34 1 1.6942 -9.7999 -2.1211 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869736362.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:59 Heat of formation + Delta-G solvation = -147.384822 kcal Electronic energy + Delta-G solvation = -22043.552070 eV Core-core repulsion = 18160.765183 eV Total energy + Delta-G solvation = -3882.786887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.060 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69145 -39.91304 -38.20717 -37.34426 -36.78008 -36.04274 -34.01871 -32.53368 -31.39472 -31.20488 -28.81175 -27.23818 -24.61946 -23.33169 -22.59114 -20.72017 -19.59812 -18.91324 -18.09475 -17.63148 -16.86767 -16.77495 -16.14164 -15.98825 -15.77467 -15.46525 -14.53598 -14.43367 -14.29056 -14.08342 -13.95116 -13.25207 -12.98199 -12.87184 -12.52088 -12.29940 -12.01917 -11.92144 -11.68083 -11.63521 -11.39803 -11.16443 -10.89779 -10.48141 -10.44076 -10.40313 -10.30979 -9.63268 -9.25331 -8.89360 -8.54019 -8.10020 -6.51478 -3.93644 0.63417 0.81539 1.79488 2.26444 2.62937 3.10654 3.19883 3.23560 3.30965 3.69448 3.71908 4.10754 4.20636 4.38446 4.66756 4.76998 4.80802 4.98248 5.09142 5.13558 5.19142 5.29543 5.44914 5.53582 5.65964 5.67864 5.80862 6.03313 6.04981 6.25241 6.60541 7.16814 7.46566 7.80915 7.94471 8.46723 9.05618 9.37780 9.87397 10.65800 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.033606 B = 0.002153 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.982359 B =12999.983202 C =13174.407237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.024 3.976 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.302 4.302 8 H 0.107 0.893 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.325 6.325 14 C 0.457 3.543 15 O -0.505 6.505 16 C -0.073 4.073 17 C -0.069 4.069 18 C -0.081 4.081 19 C -0.131 4.131 20 C 0.117 3.883 21 O -0.487 6.487 22 C -0.062 4.062 23 Cl -0.058 7.058 24 C -0.079 4.079 25 H 0.274 0.726 26 H 0.395 0.605 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.391 0.609 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -24.823 0.379 24.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.125 0.875 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.240 6.240 14 C 0.299 3.701 15 O -0.394 6.394 16 C -0.111 4.111 17 C -0.069 4.069 18 C -0.099 4.099 19 C -0.150 4.150 20 C 0.071 3.929 21 O -0.297 6.297 22 C -0.089 4.089 23 Cl -0.029 7.029 24 C -0.098 4.098 25 H 0.083 0.917 26 H 0.229 0.771 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.248 0.752 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.153 -24.347 0.238 24.376 hybrid contribution -0.226 0.507 -0.165 0.579 sum 0.927 -23.841 0.073 23.859 Atomic orbital electron populations 1.69619 1.06015 1.28417 1.49689 1.25324 0.95691 0.99903 0.96893 0.85739 0.79705 0.80731 0.77818 1.19074 1.20608 1.20614 1.19776 0.93502 0.81729 1.48100 0.87544 1.41723 1.09395 1.04122 1.63776 1.19319 0.88330 0.84080 0.85985 1.90558 1.13408 1.86796 1.55295 1.22756 0.90827 0.84535 1.03531 1.86540 1.40377 1.14131 1.82944 1.23491 0.88629 0.84848 0.73123 1.90699 1.16732 1.86782 1.45154 1.20260 0.96593 0.86620 1.07591 1.19267 0.99263 0.95479 0.92910 1.21048 0.96244 0.94645 0.97978 1.21342 0.98770 0.97396 0.97483 1.18197 0.94095 0.89937 0.90670 1.84871 1.34307 1.14297 1.96245 1.21311 1.02485 0.97912 0.87184 1.98376 1.91089 1.82288 1.31188 1.20866 0.96529 0.93440 0.98929 0.91652 0.77148 0.89528 0.89536 0.86196 0.86052 0.84632 0.84226 0.75213 0.84336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.28 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 3 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.90 5.29 -10.97 -0.06 -13.96 16 10 C 0.44 10.45 7.86 -10.99 -0.09 10.36 16 11 O -0.58 -15.82 16.08 -14.11 -0.23 -16.05 16 12 C 0.06 1.14 5.94 36.01 0.21 1.36 16 13 O -0.33 -5.76 9.75 -45.90 -0.45 -6.21 16 14 C 0.46 6.64 7.95 36.00 0.29 6.92 16 15 O -0.51 -8.55 15.78 -18.76 -0.30 -8.85 16 16 C -0.07 -0.70 5.94 -29.04 -0.17 -0.87 16 17 C -0.07 -0.67 4.38 -104.60 -0.46 -1.13 16 18 C -0.08 -0.71 9.69 -39.60 -0.38 -1.10 16 19 C -0.13 -1.11 9.99 -39.44 -0.39 -1.51 16 20 C 0.12 1.10 6.70 -39.19 -0.26 0.84 16 21 O -0.49 -4.01 12.96 -19.50 -0.25 -4.26 16 22 C -0.06 -0.63 6.33 -39.36 -0.25 -0.88 16 23 Cl -0.06 -0.58 28.50 -51.86 -1.48 -2.06 16 24 C -0.08 -0.79 9.48 -39.57 -0.38 -1.17 16 25 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 27 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 28 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 29 H 0.12 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.12 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.14 0.94 8.06 -52.48 -0.42 0.51 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.39 1.33 9.06 45.56 0.41 1.74 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -34.49 330.77 -6.57 -41.06 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -2.37 Total: 8.12 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -2.12 Total: 4.95 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.67 Total: -37.24 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.22 Total: -35.37 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.48 Total: -2.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.49 -6.57 -41.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869736362.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.328 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds