Wall clock time and date at job start Tue Mar 31 2020 04:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48492 * 109.46947 * 179.97438 * 3 2 1 5 5 H 1.48510 * 109.46951 * 299.99490 * 3 2 1 6 6 H 1.48496 * 109.47086 * 59.99304 * 3 2 1 7 7 C 1.40043 * 119.99604 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99503 * 180.02562 * 7 2 1 9 9 C 1.46375 * 120.00129 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99925 * 359.97438 * 9 7 2 11 11 N 1.34777 * 119.99576 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99916 * 179.97438 * 11 9 7 13 13 H 1.09006 * 109.46688 * 34.98845 * 12 11 9 14 14 C 1.53145 * 109.46523 * 154.97553 * 12 11 9 15 15 C 1.53396 * 109.24311 * 189.52283 * 14 12 11 16 16 C 1.51040 * 108.20731 * 311.15177 * 15 14 12 17 17 N 1.30068 * 127.39888 * 196.01028 * 16 15 14 18 18 C 1.34315 * 109.22615 * 179.89622 * 17 16 15 19 19 C 1.34954 * 108.06758 * 0.02651 * 18 17 16 20 20 Br 1.89099 * 126.66134 * 180.02562 * 19 18 17 21 21 N 1.35508 * 123.96531 * 15.95573 * 16 15 14 22 22 C 1.46471 * 124.81973 * 0.14877 * 21 16 15 23 23 H 0.97003 * 120.00097 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00238 * 0.02562 * 11 9 7 25 25 H 1.09006 * 109.50528 * 309.44969 * 14 12 11 26 26 H 1.08995 * 109.51193 * 69.53987 * 14 12 11 27 27 H 1.08999 * 109.71772 * 70.83783 * 15 14 12 28 28 H 1.09005 * 109.71719 * 191.43284 * 15 14 12 29 29 H 1.08004 * 125.97011 * 180.28548 * 18 17 16 30 30 H 1.08999 * 109.58734 * 136.88768 * 22 21 16 31 31 H 1.09004 * 109.57945 * 257.16426 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8821 2.3964 -1.2127 6 1 1.8819 2.3965 1.2124 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9164 0.0011 13 1 0.3054 -4.8101 -0.5879 14 6 2.0941 -6.0126 -0.6098 15 6 1.2493 -7.2745 -0.8266 16 6 0.4944 -7.5620 0.4497 17 7 -0.0964 -8.6711 0.7852 18 6 -0.6528 -8.5262 1.9991 19 6 -0.3949 -7.2738 2.4309 20 35 -0.9341 -6.5133 4.0761 21 7 0.3301 -6.6638 1.4508 22 6 0.8524 -5.2954 1.4408 23 1 -0.4850 0.8401 -0.0004 24 1 2.9188 -3.6477 0.0009 25 1 2.4902 -5.6710 -1.5661 26 1 2.9189 -6.2376 0.0663 27 1 0.5445 -7.1097 -1.6416 28 1 1.8995 -8.1155 -1.0674 29 1 -1.2062 -9.2814 2.5376 30 1 0.0921 -4.6113 1.8176 31 1 1.7398 -5.2385 2.0713 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907279059.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:55 Heat of formation + Delta-G solvation = -5.162674 kcal Electronic energy + Delta-G solvation = -18088.803697 eV Core-core repulsion = 15030.049090 eV Total energy + Delta-G solvation = -3058.754607 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 313.017 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.50677 -39.84182 -37.51401 -34.73403 -34.60482 -33.88406 -32.44555 -30.06589 -28.97996 -28.01204 -25.24847 -23.31018 -22.51596 -21.60017 -20.40702 -19.07715 -18.06358 -17.53231 -17.22708 -16.33550 -16.00064 -15.73643 -15.19350 -15.03432 -14.81215 -14.64083 -14.40806 -14.01014 -13.27540 -13.10267 -12.84931 -12.76373 -12.62626 -12.29862 -12.20017 -11.99395 -11.88448 -11.81701 -11.11085 -10.97090 -10.75867 -9.91986 -9.67040 -9.40632 -8.31596 -6.87682 0.17364 0.66998 1.39724 1.41293 1.57788 1.61489 1.85933 2.23413 2.44234 2.92376 3.20440 3.36619 3.59692 3.71165 3.84853 3.97375 4.21532 4.32255 4.34098 4.40121 4.65491 4.81750 5.00663 5.06334 5.09928 5.31752 5.38279 5.83878 5.87690 6.12890 6.23484 6.78799 6.86105 7.48954 8.45350 8.64347 Molecular weight = 313.02amu Principal moments of inertia in cm(-1) A = 0.018804 B = 0.004395 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.679138 B = 6369.389101 C = 7534.404830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.994 3.006 4 H -0.244 1.244 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.568 4.568 8 H 0.092 0.908 9 C 0.539 3.461 10 O -0.627 6.627 11 N -0.741 5.741 12 C 0.150 3.850 13 H 0.053 0.947 14 C -0.119 4.119 15 C -0.027 4.027 16 C 0.225 3.775 17 N -0.504 5.504 18 C 0.018 3.982 19 C -0.059 4.059 20 Br 0.020 6.980 21 N -0.440 5.440 22 C 0.099 3.901 23 H 0.274 0.726 24 H 0.403 0.597 25 H 0.109 0.891 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.202 0.798 30 H 0.062 0.938 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -13.672 4.453 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.814 3.186 4 H -0.167 1.167 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.605 4.605 8 H 0.110 0.890 9 C 0.344 3.656 10 O -0.514 6.514 11 N -0.395 5.395 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.157 4.157 15 C -0.066 4.066 16 C -0.039 4.039 17 N -0.224 5.224 18 C -0.135 4.135 19 C -0.252 4.252 20 Br 0.103 6.897 21 N -0.123 5.123 22 C -0.025 4.025 23 H 0.084 0.916 24 H 0.238 0.762 25 H 0.128 0.872 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.150 0.850 29 H 0.219 0.781 30 H 0.081 0.919 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.693 -13.835 4.589 15.037 hybrid contribution 0.178 1.519 0.558 1.628 sum 3.871 -12.316 5.147 13.899 Atomic orbital electron populations 1.70188 1.09528 1.28877 1.36474 1.26926 0.95422 1.04906 0.91231 0.85014 0.79576 0.75670 0.78340 1.16705 1.19570 1.19738 1.21456 0.94912 0.89806 1.54279 0.89027 1.18628 0.86830 0.84261 0.75884 1.90590 1.16238 1.87677 1.56902 1.45744 1.09452 1.03403 1.80915 1.20706 0.96908 0.86097 0.92055 0.92895 1.21953 0.97760 0.92079 1.03883 1.20412 0.97864 0.99349 0.88968 1.24134 1.01336 0.84836 0.93564 1.70211 1.14860 1.23633 1.13651 1.22766 1.03289 0.94224 0.93177 1.23139 1.10643 0.97338 0.94062 1.96722 1.89397 1.84302 1.19274 1.45434 1.39632 1.12628 1.14581 1.22526 0.99888 0.78480 1.01619 0.91644 0.76201 0.87241 0.88978 0.88150 0.85004 0.78070 0.91918 0.88349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.75 11.83 21.83 0.26 -48.49 16 2 C 0.03 1.63 5.50 85.30 0.47 2.10 16 3 Si 0.99 39.19 29.56 68.60 2.03 41.22 16 4 H -0.24 -8.77 7.11 99.48 0.71 -8.07 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 7 C -0.57 -30.10 9.54 24.83 0.24 -29.86 16 8 H 0.09 4.28 7.85 -2.91 -0.02 4.26 16 9 C 0.54 28.87 7.71 86.36 0.67 29.54 16 10 O -0.63 -39.78 14.68 -4.30 -0.06 -39.84 16 11 N -0.74 -28.98 5.07 -446.17 -2.26 -31.24 16 12 C 0.15 5.07 2.47 45.13 0.11 5.19 16 13 H 0.05 2.20 7.55 -2.38 -0.02 2.18 16 14 C -0.12 -2.61 5.43 30.78 0.17 -2.44 16 15 C -0.03 -0.57 6.33 30.09 0.19 -0.38 16 16 C 0.22 6.52 7.65 138.21 1.06 7.58 16 17 N -0.50 -15.32 11.24 -187.37 -2.11 -17.43 16 18 C 0.02 0.50 11.85 83.56 0.99 1.49 16 19 C -0.06 -1.79 7.41 83.24 0.62 -1.18 16 20 Br 0.02 0.56 33.91 -20.37 -0.69 -0.13 16 21 N -0.44 -13.94 3.14 -507.70 -1.59 -15.53 16 22 C 0.10 3.37 6.38 86.47 0.55 3.92 16 23 H 0.27 14.78 8.29 -92.71 -0.77 14.01 16 24 H 0.40 12.93 8.58 -92.71 -0.80 12.13 16 25 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.09 1.71 8.12 -2.39 -0.02 1.69 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 29 H 0.20 4.40 8.06 -2.91 -0.02 4.38 16 30 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -73.61 290.19 1.00 -72.61 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.38 Total: 22.88 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.06 Total: 15.95 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -5.70 Total: -112.69 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.06 Total: -39.84 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 35 Polarization: 0.56 SS G_CDS: -0.69 Total: -0.13 kcal Total: -73.61 1.00 -72.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907279059.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.449 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds