Wall clock time and date at job start Tue Mar 31 2020 04:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47391 * 315.72743 * 3 2 1 5 5 C 1.36945 * 120.00106 * 88.17749 * 4 3 2 6 6 H 1.07992 * 120.00027 * 173.76284 * 5 4 3 7 7 C 1.38815 * 119.99568 * 353.47829 * 5 4 3 8 8 N 1.31620 * 120.00295 * 335.56486 * 7 5 4 9 9 Si 1.86798 * 119.99760 * 155.55838 * 7 5 4 10 10 H 1.48498 * 109.47092 * 90.00226 * 9 7 5 11 11 H 1.48500 * 109.47356 * 210.00280 * 9 7 5 12 12 H 1.48507 * 109.47109 * 330.00449 * 9 7 5 13 13 S 1.65602 * 120.00374 * 268.17869 * 4 3 2 14 14 O 1.42105 * 106.39865 * 23.53736 * 13 4 3 15 15 O 1.42096 * 106.40541 * 156.45999 * 13 4 3 16 16 C 1.76201 * 107.21703 * 270.00095 * 13 4 3 17 17 N 1.30424 * 125.99866 * 90.02014 * 16 13 4 18 18 N 1.39928 * 108.92367 * 179.97438 * 17 16 13 19 19 H 0.97003 * 125.74605 * 180.02562 * 18 17 16 20 20 C 1.34220 * 108.51082 * 359.97438 * 18 17 16 21 21 C 1.38127 * 107.41290 * 359.77070 * 20 18 17 22 22 C 1.47275 * 126.43280 * 180.22111 * 21 20 18 23 23 O 1.21530 * 120.00256 * 180.16633 * 22 21 20 24 24 O 1.34755 * 119.99913 * 0.16751 * 22 21 20 25 25 C 1.45208 * 116.99926 * 180.02562 * 24 22 21 26 26 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47551 * 195.73016 * 3 2 1 28 28 H 1.08999 * 109.47346 * 75.72917 * 3 2 1 29 29 H 0.96995 * 119.99622 * 179.97438 * 8 7 5 30 30 H 1.08002 * 126.29745 * 180.02562 * 20 18 17 31 31 H 1.09000 * 109.46886 * 179.97438 * 25 24 22 32 32 H 1.09000 * 109.46712 * 299.99626 * 25 24 22 33 33 H 1.08997 * 109.47234 * 59.99637 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9881 0.9642 5 6 3.3281 -2.2867 0.5749 6 1 3.7825 -2.9923 1.2545 7 6 2.9345 -2.6976 -0.6913 8 7 1.9838 -2.0473 -1.3283 9 14 3.7543 -4.1731 -1.4913 10 1 3.0116 -5.4076 -1.1313 11 1 3.7475 -4.0039 -2.9666 12 1 5.1557 -4.2811 -1.0119 13 16 3.4537 -0.5355 2.5249 14 8 2.6753 0.6274 2.7724 15 8 3.3605 -1.7150 3.3118 16 6 5.1399 -0.0280 2.5867 17 7 5.5842 1.1817 2.3862 18 7 6.9768 1.1820 2.5222 19 1 7.5557 1.9541 2.4234 20 6 7.3768 -0.0657 2.8133 21 6 6.2477 -0.8594 2.8688 22 6 6.2062 -2.3019 3.1628 23 8 5.1419 -2.8885 3.1786 24 8 7.3483 -2.9714 3.4144 25 6 7.2318 -4.3912 3.6957 26 1 -1.0498 -0.0001 0.0004 27 1 3.0089 0.9900 0.2786 28 1 3.0095 -0.2525 -0.9959 29 1 1.7092 -2.3342 -2.2132 30 1 8.3941 -0.3888 2.9783 31 1 8.2223 -4.8075 3.8795 32 1 6.6068 -4.5369 4.5767 33 1 6.7791 -4.8949 2.8417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912549117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:22 Heat of formation + Delta-G solvation = 13.794002 kcal Electronic energy + Delta-G solvation = -24836.675469 eV Core-core repulsion = 20995.214278 eV Total energy + Delta-G solvation = -3841.461191 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.20219 -39.45269 -36.19100 -36.11303 -35.56901 -34.48148 -31.80961 -31.77530 -30.97254 -30.66289 -27.33262 -26.43508 -23.74638 -23.24875 -22.60024 -20.39997 -18.39821 -18.30114 -17.80059 -16.82627 -16.71914 -16.35322 -15.91918 -15.81367 -15.56083 -14.72559 -14.47323 -14.28442 -13.69445 -13.33086 -13.18802 -12.98733 -12.71779 -12.33554 -11.79906 -11.65974 -11.27528 -11.10066 -10.89136 -10.86569 -10.70107 -10.52679 -10.43024 -10.32856 -10.11671 -9.97113 -9.62506 -9.53581 -9.06114 -8.81068 -8.69784 -8.15999 -6.35642 -3.75335 1.35173 1.50849 1.89418 2.68411 3.18837 3.20164 3.26418 3.30820 3.47332 3.93299 4.19779 4.37524 4.51115 4.65148 4.79348 4.91840 5.12190 5.26372 5.33885 5.45071 5.49124 5.74042 5.79759 5.98200 6.10946 6.26129 6.77321 6.84273 7.04048 7.11135 7.34257 7.36941 7.54569 8.31912 8.42707 8.84644 9.09167 9.22712 10.60759 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.007862 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.604802 B = 3560.705530 C = 4810.498996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C -0.093 4.093 3 C 0.241 3.759 4 N -0.807 5.807 5 C -0.288 4.288 6 H 0.128 0.872 7 C 0.042 3.958 8 N -0.831 5.831 9 Si 0.903 3.097 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.269 1.269 13 S 2.602 3.398 14 O -0.970 6.970 15 O -0.916 6.916 16 C -0.405 4.405 17 N -0.201 5.201 18 N -0.462 5.462 19 H 0.442 0.558 20 C 0.111 3.889 21 C -0.204 4.204 22 C 0.504 3.496 23 O -0.428 6.428 24 O -0.370 6.370 25 C 0.039 3.961 26 H 0.198 0.802 27 H 0.064 0.936 28 H 0.108 0.892 29 H 0.271 0.729 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.731 1.823 3.558 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.096 4.096 3 C 0.116 3.884 4 N -0.637 5.637 5 C -0.427 4.427 6 H 0.145 0.855 7 C -0.167 4.167 8 N -0.471 5.471 9 Si 0.728 3.272 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.194 1.194 13 S 2.685 3.315 14 O -0.959 6.959 15 O -0.904 6.904 16 C -0.646 4.646 17 N -0.024 5.024 18 N -0.169 5.169 19 H 0.287 0.713 20 C -0.041 4.041 21 C -0.218 4.218 22 C 0.344 3.656 23 O -0.310 6.310 24 O -0.289 6.289 25 C -0.055 4.055 26 H 0.216 0.784 27 H 0.082 0.918 28 H 0.126 0.874 29 H 0.082 0.918 30 H 0.213 0.787 31 H 0.113 0.887 32 H 0.081 0.919 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.590 2.939 4.017 12.614 hybrid contribution 1.591 -1.213 -0.726 2.128 sum 13.180 1.727 3.291 13.694 Atomic orbital electron populations 1.24172 0.95289 1.05099 1.04115 1.22840 0.94006 0.95825 0.96940 1.17916 0.84966 0.89117 0.96432 1.53944 1.66117 1.13544 1.30093 1.19818 1.39131 0.83369 1.00350 0.85485 1.25204 0.95558 0.99303 0.96644 1.70221 1.21890 1.40826 1.14138 0.86320 0.80534 0.81960 0.78343 1.20100 1.20753 1.19397 1.07678 0.74994 0.73432 0.75418 1.93474 1.67007 1.50746 1.84676 1.93624 1.84669 1.44719 1.67408 1.37564 1.27636 0.94841 1.04545 1.77248 0.87592 1.19267 1.18272 1.46654 1.07725 1.09259 1.53230 0.71291 1.23285 1.00042 0.84982 0.95761 1.19021 0.91768 0.92086 1.18902 1.20112 0.82576 0.86832 0.76114 1.91224 1.28370 1.67936 1.43461 1.86448 1.35724 1.24269 1.82411 1.23179 1.02861 0.77526 1.01901 0.78441 0.91778 0.87375 0.91811 0.78739 0.88724 0.91897 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -6.14 19.25 29.55 0.57 -5.57 16 2 C -0.09 -2.32 11.44 -37.12 -0.42 -2.74 16 3 C 0.24 5.75 5.07 -6.83 -0.03 5.71 16 4 N -0.81 -20.32 2.88 -62.77 -0.18 -20.50 16 5 C -0.29 -7.54 9.40 -15.05 -0.14 -7.68 16 6 H 0.13 3.40 5.94 -52.49 -0.31 3.09 16 7 C 0.04 1.07 4.95 -17.43 -0.09 0.98 16 8 N -0.83 -21.26 9.00 55.49 0.50 -20.76 16 9 Si 0.90 19.57 29.62 -169.99 -5.03 14.53 16 10 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 13 S 2.60 63.80 5.60 -107.50 -0.60 63.20 16 14 O -0.97 -25.14 17.05 -57.17 -0.97 -26.12 16 15 O -0.92 -24.33 12.94 -67.38 -0.87 -25.20 16 16 C -0.40 -8.45 7.30 -16.97 -0.12 -8.57 16 17 N -0.20 -3.73 12.63 31.52 0.40 -3.33 16 18 N -0.46 -5.90 7.28 30.86 0.22 -5.68 16 19 H 0.44 3.44 8.96 -182.73 -1.64 1.80 16 20 C 0.11 1.42 11.86 -16.55 -0.20 1.23 16 21 C -0.20 -3.73 6.12 -105.08 -0.64 -4.38 16 22 C 0.50 9.67 7.94 34.40 0.27 9.95 16 23 O -0.43 -9.83 11.16 -27.64 -0.31 -10.14 16 24 O -0.37 -5.64 10.39 -40.64 -0.42 -6.06 16 25 C 0.04 0.48 10.57 101.05 1.07 1.55 16 26 H 0.20 3.70 7.80 -54.10 -0.42 3.28 16 27 H 0.06 1.39 7.72 -51.93 -0.40 0.99 16 28 H 0.11 2.57 6.27 -51.93 -0.33 2.24 16 29 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 30 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 311.24 15.07 4.69 4.69 Total: -1.00 -35.39 311.24 -6.25 -41.63 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -3.92 Total: 3.26 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.26 Total: -9.52 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.94 Total: -50.28 kcal Atomic # 8 Polarization: -64.94 SS G_CDS: -2.58 Total: -67.52 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: 63.80 SS G_CDS: -0.60 Total: 63.20 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -35.39 -6.25 -41.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912549117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.427 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds