Wall clock time and date at job start Tue Mar 31 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47391 * 315.72743 * 3 2 1 5 5 C 1.36945 * 120.00106 * 88.17749 * 4 3 2 6 6 H 1.07992 * 120.00027 * 173.76284 * 5 4 3 7 7 C 1.38815 * 119.99568 * 353.47829 * 5 4 3 8 8 N 1.31620 * 120.00295 * 335.56486 * 7 5 4 9 9 Si 1.86798 * 119.99760 * 155.55838 * 7 5 4 10 10 H 1.48498 * 109.47092 * 90.00226 * 9 7 5 11 11 H 1.48500 * 109.47356 * 210.00280 * 9 7 5 12 12 H 1.48507 * 109.47109 * 330.00449 * 9 7 5 13 13 S 1.65602 * 120.00374 * 268.17869 * 4 3 2 14 14 O 1.42105 * 106.39865 * 23.53736 * 13 4 3 15 15 O 1.42096 * 106.40541 * 156.45999 * 13 4 3 16 16 C 1.76201 * 107.21703 * 270.00095 * 13 4 3 17 17 N 1.30424 * 125.99866 * 90.02014 * 16 13 4 18 18 N 1.39928 * 108.92367 * 179.97438 * 17 16 13 19 19 H 0.97003 * 125.74605 * 180.02562 * 18 17 16 20 20 C 1.34220 * 108.51082 * 359.97438 * 18 17 16 21 21 C 1.38127 * 107.41290 * 359.77070 * 20 18 17 22 22 C 1.47275 * 126.43280 * 180.22111 * 21 20 18 23 23 O 1.21530 * 120.00256 * 180.16633 * 22 21 20 24 24 O 1.34755 * 119.99913 * 0.16751 * 22 21 20 25 25 C 1.45208 * 116.99926 * 180.02562 * 24 22 21 26 26 H 4.40635 * 5.51396 * 179.97438 * 4 1 2 27 27 H 1.08999 * 109.47551 * 195.73016 * 3 2 1 28 28 H 1.08999 * 109.47346 * 75.72917 * 3 2 1 29 29 H 0.96995 * 119.99622 * 179.97438 * 8 7 5 30 30 H 1.08002 * 126.29745 * 180.02562 * 20 18 17 31 31 H 1.09000 * 109.46886 * 179.97438 * 25 24 22 32 32 H 1.09000 * 109.46712 * 299.99626 * 25 24 22 33 33 H 1.08997 * 109.47234 * 59.99637 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9881 0.9642 5 6 3.3281 -2.2867 0.5749 6 1 3.7825 -2.9923 1.2545 7 6 2.9345 -2.6976 -0.6913 8 7 1.9838 -2.0473 -1.3283 9 14 3.7543 -4.1731 -1.4913 10 1 3.0116 -5.4076 -1.1313 11 1 3.7475 -4.0039 -2.9666 12 1 5.1557 -4.2811 -1.0119 13 16 3.4537 -0.5355 2.5249 14 8 2.6753 0.6274 2.7724 15 8 3.3605 -1.7150 3.3118 16 6 5.1399 -0.0280 2.5867 17 7 5.5842 1.1817 2.3862 18 7 6.9768 1.1820 2.5222 19 1 7.5557 1.9541 2.4234 20 6 7.3768 -0.0657 2.8133 21 6 6.2477 -0.8594 2.8688 22 6 6.2062 -2.3019 3.1628 23 8 5.1419 -2.8885 3.1786 24 8 7.3483 -2.9714 3.4144 25 6 7.2318 -4.3912 3.6957 26 1 -1.0498 -0.0001 0.0004 27 1 3.0089 0.9900 0.2786 28 1 3.0095 -0.2525 -0.9959 29 1 1.7092 -2.3342 -2.2132 30 1 8.3941 -0.3888 2.9783 31 1 8.2223 -4.8075 3.8795 32 1 6.6068 -4.5369 4.5767 33 1 6.7791 -4.8949 2.8417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912549117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:21 Heat of formation + Delta-G solvation = -13.975678 kcal Electronic energy + Delta-G solvation = -24837.879653 eV Core-core repulsion = 20995.214278 eV Total energy + Delta-G solvation = -3842.665375 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.57066 -40.81641 -38.11175 -37.93919 -37.13321 -36.61567 -33.60016 -33.18254 -32.79419 -32.02336 -28.41751 -28.25358 -25.62313 -24.53241 -24.22582 -21.77270 -20.23727 -19.64669 -19.58151 -18.66890 -18.20165 -18.05297 -17.47384 -17.21591 -16.97116 -16.43320 -16.19766 -15.89138 -15.32350 -14.99887 -14.77175 -14.36241 -14.17560 -14.03331 -13.45789 -13.14356 -12.97027 -12.89528 -12.74376 -12.67232 -12.60235 -12.27216 -12.22234 -11.94775 -11.58396 -11.50247 -11.31793 -11.19246 -10.91630 -10.53803 -10.16682 -9.98795 -8.10203 -5.70308 -0.51570 0.21842 0.35050 1.46631 1.47873 1.52717 1.59830 1.94828 2.00154 2.16803 2.41988 2.52731 2.74126 2.90898 3.12952 3.20940 3.81506 3.91480 3.99929 4.20301 4.32101 4.43987 4.45443 4.47700 4.68948 4.83520 4.99675 5.30191 5.46189 5.58462 5.72877 5.85300 6.17724 6.54565 6.94708 7.05747 7.26070 7.41385 8.88134 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.012550 B = 0.007862 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.604802 B = 3560.705530 C = 4810.498996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.140 4.140 3 C 0.249 3.751 4 N -0.840 5.840 5 C -0.336 4.336 6 H 0.109 0.891 7 C 0.005 3.995 8 N -0.878 5.878 9 Si 0.961 3.039 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.266 1.266 13 S 2.672 3.328 14 O -0.990 6.990 15 O -0.939 6.939 16 C -0.435 4.435 17 N -0.215 5.215 18 N -0.426 5.426 19 H 0.470 0.530 20 C 0.167 3.833 21 C -0.243 4.243 22 C 0.503 3.497 23 O -0.481 6.481 24 O -0.354 6.354 25 C 0.031 3.969 26 H 0.233 0.767 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.266 0.734 30 H 0.262 0.738 31 H 0.143 0.857 32 H 0.057 0.943 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.530 3.011 4.760 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.142 4.142 3 C 0.124 3.876 4 N -0.672 5.672 5 C -0.467 4.467 6 H 0.127 0.873 7 C -0.199 4.199 8 N -0.517 5.517 9 Si 0.786 3.214 10 H -0.209 1.209 11 H -0.200 1.200 12 H -0.191 1.191 13 S 2.757 3.243 14 O -0.979 6.979 15 O -0.928 6.928 16 C -0.683 4.683 17 N -0.040 5.040 18 N -0.136 5.136 19 H 0.321 0.679 20 C 0.014 3.986 21 C -0.257 4.257 22 C 0.345 3.655 23 O -0.367 6.367 24 O -0.271 6.271 25 C -0.062 4.062 26 H 0.250 0.750 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.278 0.722 31 H 0.161 0.839 32 H 0.076 0.924 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.330 4.035 5.097 16.652 hybrid contribution 0.735 -1.271 -0.633 1.598 sum 16.065 2.765 4.464 16.902 Atomic orbital electron populations 1.25114 0.96429 1.03865 1.02703 1.23560 0.95260 0.97093 0.98326 1.17958 0.84702 0.89127 0.95862 1.53115 1.71966 1.14272 1.27853 1.19555 1.41476 0.84812 1.00840 0.87327 1.25701 0.95760 1.01324 0.97114 1.70312 1.24104 1.42818 1.14474 0.85455 0.79437 0.78876 0.77674 1.20927 1.20032 1.19095 1.02994 0.74589 0.72652 0.74022 1.93477 1.67889 1.51660 1.84905 1.93641 1.85482 1.45921 1.67716 1.35942 1.25810 0.97303 1.09250 1.77143 0.91061 1.17839 1.17930 1.46585 1.05723 1.10802 1.50527 0.67850 1.24112 1.00884 0.83040 0.90555 1.19198 0.92737 0.92321 1.21484 1.20389 0.82779 0.87353 0.74946 1.91213 1.30374 1.69085 1.46028 1.86426 1.33444 1.25588 1.81617 1.23534 1.05655 0.75885 1.01159 0.75005 0.90500 0.87777 0.92411 0.72238 0.83874 0.92392 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.27 19.25 74.32 1.43 -10.83 16 2 C -0.14 -7.19 11.44 31.12 0.36 -6.83 16 3 C 0.25 12.37 5.07 84.57 0.43 12.80 16 4 N -0.84 -44.02 2.88 -352.52 -1.01 -45.04 16 5 C -0.34 -18.58 9.40 84.03 0.79 -17.79 16 6 H 0.11 6.23 5.94 -2.91 -0.02 6.21 16 7 C 0.00 0.25 4.95 84.86 0.42 0.67 16 8 N -0.88 -47.53 9.00 21.65 0.19 -47.33 16 9 Si 0.96 42.39 29.62 68.60 2.03 44.43 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 S 2.67 133.30 5.60 -56.49 -0.32 132.99 16 14 O -0.99 -51.69 17.05 -128.00 -2.18 -53.87 16 15 O -0.94 -51.42 12.94 -118.24 -1.53 -52.95 16 16 C -0.44 -17.54 7.30 85.67 0.63 -16.91 16 17 N -0.21 -7.30 12.63 -54.20 -0.68 -7.99 16 18 N -0.43 -8.47 7.28 -56.29 -0.41 -8.88 16 19 H 0.47 4.19 8.96 -213.43 -1.91 2.27 16 20 C 0.17 3.25 11.86 84.30 1.00 4.25 16 21 C -0.24 -8.21 6.12 -20.16 -0.12 -8.33 16 22 C 0.50 18.64 7.94 70.20 0.56 19.20 16 23 O -0.48 -22.56 11.16 27.72 0.31 -22.25 16 24 O -0.35 -9.70 10.39 -56.66 -0.59 -10.29 16 25 C 0.03 0.69 10.57 113.37 1.20 1.89 16 26 H 0.23 8.57 7.80 -4.43 -0.03 8.54 16 27 H 0.08 3.44 7.72 -2.39 -0.02 3.42 16 28 H 0.10 5.25 6.27 -2.39 -0.01 5.24 16 29 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 30 H 0.26 1.66 8.06 -2.91 -0.02 1.63 16 31 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -83.65 311.24 1.76 -81.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -0.73 Total: 11.19 kcal Atomic # 6 Polarization: -28.57 SS G_CDS: 6.68 Total: -21.89 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -1.91 Total: -109.24 kcal Atomic # 8 Polarization: -135.37 SS G_CDS: -3.99 Total: -139.36 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 133.30 SS G_CDS: -0.32 Total: 132.99 kcal Total: -83.65 1.76 -81.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912549117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.911 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds