Wall clock time and date at job start Tue Mar 31 2020 04:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47444 * 269.99802 * 3 2 1 5 5 H 1.48509 * 109.47271 * 30.00097 * 3 2 1 6 6 H 1.48506 * 109.47183 * 149.99649 * 3 2 1 7 7 C 1.39921 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99583 * 168.99536 * 7 2 1 9 9 C 1.41293 * 120.00148 * 348.98738 * 7 2 1 10 10 C 1.40644 * 120.22953 * 331.76911 * 9 7 2 11 11 C 1.38143 * 119.70692 * 180.26601 * 10 9 7 12 12 N 1.40009 * 119.90957 * 179.74970 * 11 10 9 13 13 C 1.34774 * 120.00050 * 326.08238 * 12 11 10 14 14 O 1.21293 * 119.99820 * 354.87355 * 13 12 11 15 15 C 1.50697 * 119.99883 * 174.87703 * 13 12 11 16 16 C 1.55890 * 110.81913 * 180.02562 * 15 13 12 17 17 S 1.83087 * 82.43671 * 142.74151 * 16 15 13 18 18 O 1.42097 * 111.36028 * 90.42215 * 17 16 15 19 19 O 1.42100 * 111.35768 * 229.53083 * 17 16 15 20 20 C 1.55876 * 110.82400 * 293.64744 * 15 13 12 21 21 C 1.39371 * 120.17999 * 359.47601 * 11 10 9 22 22 C 1.38364 * 120.46838 * 0.25365 * 21 11 10 23 23 C 1.38010 * 120.28859 * 0.02562 * 22 21 11 24 24 F 1.35103 * 120.09366 * 179.97438 * 23 22 21 25 25 H 0.96999 * 119.99704 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.14787 * 0.02562 * 10 9 7 27 27 H 0.96995 * 120.00064 * 146.08240 * 12 11 10 28 28 H 1.08996 * 110.39731 * 56.83141 * 15 13 12 29 29 H 1.09000 * 114.38580 * 29.34785 * 16 15 13 30 30 H 1.09005 * 114.37953 * 256.13331 * 16 15 13 31 31 H 1.09004 * 114.37860 * 103.87020 * 20 15 13 32 32 H 1.08998 * 114.38310 * 330.65614 * 20 15 13 33 33 H 1.07998 * 119.76482 * 180.26948 * 21 11 10 34 34 H 1.08001 * 119.85467 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 -0.0005 8 1 3.0733 -1.2202 -0.1791 9 6 1.3213 -2.4242 0.2327 10 6 0.1535 -2.4371 1.0163 11 6 -0.5065 -3.6295 1.2419 12 7 -1.6665 -3.6479 2.0257 13 6 -1.7912 -2.7989 3.0650 14 8 -0.8629 -2.0841 3.3788 15 6 -3.0839 -2.7378 3.8371 16 6 -2.9934 -1.6891 4.9869 17 16 -4.7350 -1.3794 4.5148 18 8 -5.6262 -2.2017 5.2556 19 8 -4.9825 0.0078 4.3311 20 6 -4.2354 -2.1805 2.9466 21 6 -0.0240 -4.8133 0.6868 22 6 1.1211 -4.8083 -0.0899 23 6 1.7989 -3.6289 -0.3231 24 9 2.9168 -3.6287 -1.0817 25 1 -0.4850 0.8401 0.0004 26 1 -0.2235 -1.5193 1.4430 27 1 -2.3804 -4.2718 1.8208 28 1 -3.3390 -3.7223 4.2293 29 1 -2.3179 -0.8577 4.7856 30 1 -2.8663 -2.1201 5.9801 31 1 -4.9322 -2.9374 2.5863 32 1 -3.9094 -1.4874 2.1711 33 1 -0.5477 -5.7410 0.8639 34 1 1.4865 -5.7315 -0.5149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001182816213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:35 Heat of formation + Delta-G solvation = -104.110988 kcal Electronic energy + Delta-G solvation = -23529.144585 eV Core-core repulsion = 19662.650688 eV Total energy + Delta-G solvation = -3866.493897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -47.26054 -40.07518 -37.50173 -37.32961 -36.23578 -35.24116 -34.48068 -33.31785 -29.86490 -28.33700 -27.61521 -25.52403 -24.15968 -21.79359 -20.75409 -19.65370 -18.97661 -18.08628 -17.43868 -16.78640 -16.70100 -16.10563 -15.93384 -15.59320 -15.31116 -14.89324 -14.30661 -14.05414 -13.93740 -13.71252 -13.46069 -13.03196 -12.67087 -12.42983 -12.38401 -12.31446 -11.99995 -11.93968 -11.87616 -11.70072 -11.24083 -11.04935 -10.83797 -10.64015 -10.54946 -10.38114 -9.86304 -9.56641 -9.37977 -9.00476 -7.62812 -7.02049 -6.81770 -4.51051 -0.23364 1.98704 2.28705 2.66609 2.89861 3.05257 3.08833 3.12852 3.23384 3.34064 3.68170 3.83877 3.88547 3.96422 4.47849 4.59429 4.85950 4.98267 5.16101 5.39176 5.43815 5.62732 5.80374 5.99292 6.27821 6.58301 6.76091 6.84934 7.08860 7.29738 7.40957 7.55842 7.90206 7.95443 8.09461 8.34186 8.59310 8.68480 8.73530 10.08308 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004494 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.652749 B = 6229.065962 C = 7735.788922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.446 4.446 8 H 0.084 0.916 9 C 0.094 3.906 10 C -0.133 4.133 11 C 0.131 3.869 12 N -0.659 5.659 13 C 0.526 3.474 14 O -0.500 6.500 15 C -0.166 4.166 16 C -0.536 4.536 17 S 2.378 3.622 18 O -0.926 6.926 19 O -0.931 6.931 20 C -0.557 4.557 21 C -0.239 4.239 22 C -0.109 4.109 23 C -0.036 4.036 24 F -0.163 7.163 25 H 0.283 0.717 26 H 0.149 0.851 27 H 0.400 0.600 28 H 0.135 0.865 29 H 0.162 0.838 30 H 0.148 0.852 31 H 0.152 0.848 32 H 0.157 0.843 33 H 0.100 0.900 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.842 -3.984 6.627 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.475 4.475 8 H 0.102 0.898 9 C 0.090 3.910 10 C -0.155 4.155 11 C 0.039 3.961 12 N -0.303 5.303 13 C 0.309 3.691 14 O -0.374 6.374 15 C -0.191 4.191 16 C -0.666 4.666 17 S 2.561 3.439 18 O -0.923 6.923 19 O -0.928 6.928 20 C -0.686 4.686 21 C -0.260 4.260 22 C -0.129 4.129 23 C -0.056 4.056 24 F -0.142 7.142 25 H 0.094 0.906 26 H 0.166 0.834 27 H 0.234 0.766 28 H 0.153 0.847 29 H 0.180 0.820 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.175 0.825 33 H 0.118 0.882 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.316 -2.795 7.303 12.944 hybrid contribution 1.023 -0.383 -0.781 1.343 sum -9.293 -3.178 6.522 11.790 Atomic orbital electron populations 1.69751 1.07591 1.29531 1.34716 1.25911 0.94908 1.01540 0.92041 0.86168 0.80530 0.79972 0.79300 1.19314 1.19869 1.18312 1.19515 0.96349 0.90164 1.41491 0.89812 1.17513 0.92358 0.91286 0.89837 1.21314 0.97945 0.96286 0.99909 1.17594 0.88500 0.94577 0.95457 1.43273 1.19400 1.38175 1.29450 1.19579 0.87956 0.81080 0.80445 1.90794 1.39441 1.40899 1.66243 1.23342 0.97025 1.03417 0.95279 1.30839 1.24370 1.07192 1.04172 1.10274 0.78470 0.75408 0.79733 1.93662 1.60669 1.69788 1.68145 1.93608 1.84434 1.30548 1.84169 1.30939 1.05478 1.14435 1.17787 1.19836 1.00860 0.95132 1.10181 1.20252 0.96209 0.95729 1.00679 1.17922 0.89425 0.95479 1.02790 1.91273 1.50803 1.97416 1.74699 0.90615 0.83362 0.76559 0.84671 0.81969 0.83418 0.83027 0.82519 0.88215 0.87681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.08 10.82 55.55 0.60 -19.48 16 2 C 0.07 1.87 5.25 -17.34 -0.09 1.78 16 3 Si 0.92 18.97 29.57 -169.99 -5.03 13.95 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.45 -12.03 8.76 -37.79 -0.33 -12.36 16 8 H 0.08 2.22 7.76 -52.49 -0.41 1.81 16 9 C 0.09 2.52 5.56 -106.78 -0.59 1.93 16 10 C -0.13 -3.37 7.26 -38.71 -0.28 -3.65 16 11 C 0.13 2.80 6.26 -83.74 -0.52 2.27 16 12 N -0.66 -10.71 5.34 -9.90 -0.05 -10.77 16 13 C 0.53 8.46 6.92 -10.99 -0.08 8.39 16 14 O -0.50 -10.45 13.42 5.55 0.07 -10.38 16 15 C -0.17 -1.67 3.21 -88.69 -0.28 -1.95 16 16 C -0.54 -4.99 8.20 38.70 0.32 -4.67 16 17 S 2.38 21.39 6.81 -107.50 -0.73 20.66 16 18 O -0.93 -10.30 18.18 -57.45 -1.04 -11.35 16 19 O -0.93 -12.22 18.18 -57.45 -1.04 -13.27 16 20 C -0.56 -4.53 8.49 38.69 0.33 -4.20 16 21 C -0.24 -4.83 9.96 -39.11 -0.39 -5.22 16 22 C -0.11 -2.38 10.00 -39.62 -0.40 -2.77 16 23 C -0.04 -0.90 7.31 -38.62 -0.28 -1.18 16 24 F -0.16 -4.08 16.75 2.25 0.04 -4.04 16 25 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 26 H 0.15 3.95 4.56 -52.49 -0.24 3.71 16 27 H 0.40 4.75 8.82 -40.82 -0.36 4.39 16 28 H 0.14 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.16 1.79 7.40 -51.93 -0.38 1.41 16 30 H 0.15 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.15 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.16 1.46 8.10 -51.93 -0.42 1.04 16 33 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.11 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -35.81 313.05 -8.13 -43.94 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -3.06 Total: 7.65 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -2.60 Total: -21.64 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.55 Total: -30.25 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -2.01 Total: -34.99 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.04 Total: -4.04 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.95 kcal Atomic # 16 Polarization: 21.39 SS G_CDS: -0.73 Total: 20.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.81 -8.13 -43.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182816213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.171 kcal (2) G-P(sol) polarization free energy of solvation -35.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds