Wall clock time and date at job start Tue Mar 31 2020 04:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30859 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48502 * 109.47444 * 269.99802 * 3 2 1 5 5 H 1.48509 * 109.47271 * 30.00097 * 3 2 1 6 6 H 1.48506 * 109.47183 * 149.99649 * 3 2 1 7 7 C 1.39921 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99583 * 168.99536 * 7 2 1 9 9 C 1.41293 * 120.00148 * 348.98738 * 7 2 1 10 10 C 1.40644 * 120.22953 * 331.76911 * 9 7 2 11 11 C 1.38143 * 119.70692 * 180.26601 * 10 9 7 12 12 N 1.40009 * 119.90957 * 179.74970 * 11 10 9 13 13 C 1.34774 * 120.00050 * 326.08238 * 12 11 10 14 14 O 1.21293 * 119.99820 * 354.87355 * 13 12 11 15 15 C 1.50697 * 119.99883 * 174.87703 * 13 12 11 16 16 C 1.55890 * 110.81913 * 180.02562 * 15 13 12 17 17 S 1.83087 * 82.43671 * 142.74151 * 16 15 13 18 18 O 1.42097 * 111.36028 * 90.42215 * 17 16 15 19 19 O 1.42100 * 111.35768 * 229.53083 * 17 16 15 20 20 C 1.55876 * 110.82400 * 293.64744 * 15 13 12 21 21 C 1.39371 * 120.17999 * 359.47601 * 11 10 9 22 22 C 1.38364 * 120.46838 * 0.25365 * 21 11 10 23 23 C 1.38010 * 120.28859 * 0.02562 * 22 21 11 24 24 F 1.35103 * 120.09366 * 179.97438 * 23 22 21 25 25 H 0.96999 * 119.99704 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.14787 * 0.02562 * 10 9 7 27 27 H 0.96995 * 120.00064 * 146.08240 * 12 11 10 28 28 H 1.08996 * 110.39731 * 56.83141 * 15 13 12 29 29 H 1.09000 * 114.38580 * 29.34785 * 16 15 13 30 30 H 1.09005 * 114.37953 * 256.13331 * 16 15 13 31 31 H 1.09004 * 114.37860 * 103.87020 * 20 15 13 32 32 H 1.08998 * 114.38310 * 330.65614 * 20 15 13 33 33 H 1.07998 * 119.76482 * 180.26948 * 21 11 10 34 34 H 1.08001 * 119.85467 * 179.97438 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4901 2.0465 -1.4001 5 1 1.4399 2.6527 0.7001 6 1 3.5401 1.4403 0.7001 7 6 2.0082 -1.2117 -0.0005 8 1 3.0733 -1.2202 -0.1791 9 6 1.3213 -2.4242 0.2327 10 6 0.1535 -2.4371 1.0163 11 6 -0.5065 -3.6295 1.2419 12 7 -1.6665 -3.6479 2.0257 13 6 -1.7912 -2.7989 3.0650 14 8 -0.8629 -2.0841 3.3788 15 6 -3.0839 -2.7378 3.8371 16 6 -2.9934 -1.6891 4.9869 17 16 -4.7350 -1.3794 4.5148 18 8 -5.6262 -2.2017 5.2556 19 8 -4.9825 0.0078 4.3311 20 6 -4.2354 -2.1805 2.9466 21 6 -0.0240 -4.8133 0.6868 22 6 1.1211 -4.8083 -0.0899 23 6 1.7989 -3.6289 -0.3231 24 9 2.9168 -3.6287 -1.0817 25 1 -0.4850 0.8401 0.0004 26 1 -0.2235 -1.5193 1.4430 27 1 -2.3804 -4.2718 1.8208 28 1 -3.3390 -3.7223 4.2293 29 1 -2.3179 -0.8577 4.7856 30 1 -2.8663 -2.1201 5.9801 31 1 -4.9322 -2.9374 2.5863 32 1 -3.9094 -1.4874 2.1711 33 1 -0.5477 -5.7410 0.8639 34 1 1.4865 -5.7315 -0.5149 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182816213.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:34 Heat of formation + Delta-G solvation = -131.917426 kcal Electronic energy + Delta-G solvation = -23530.350363 eV Core-core repulsion = 19662.650688 eV Total energy + Delta-G solvation = -3867.699675 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.062 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.18574 -41.42437 -39.05454 -38.26454 -37.11588 -36.25575 -36.11757 -34.99351 -31.69720 -29.95771 -28.37789 -27.37542 -25.36437 -23.51023 -22.33853 -20.97482 -19.74037 -19.64747 -18.71386 -17.97667 -17.85378 -17.52349 -17.27688 -16.93003 -16.63918 -16.37578 -15.96068 -15.80092 -15.25703 -14.79395 -14.55736 -14.39281 -14.27328 -13.77051 -13.67587 -13.48952 -13.28671 -13.20715 -13.13281 -12.90053 -12.88255 -12.73692 -12.31665 -12.15028 -11.67409 -11.61540 -11.47090 -11.27850 -10.88810 -10.60171 -9.47152 -8.78352 -8.61359 -6.47269 -0.99173 0.60923 0.89612 1.25613 1.32773 1.40636 1.46941 1.64376 2.09411 2.15963 2.48089 2.65472 2.90759 3.02281 3.14006 3.50431 3.77579 4.04404 4.05969 4.22292 4.31957 4.56574 4.63171 4.77243 4.86757 4.97070 5.03668 5.09452 5.22362 5.61103 5.72997 5.75914 6.05153 6.18986 6.50207 6.59649 6.78002 6.85776 7.28934 8.25330 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.015013 B = 0.004494 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.652749 B = 6229.065962 C = 7735.788922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.493 4.493 8 H 0.069 0.931 9 C 0.060 3.940 10 C -0.161 4.161 11 C 0.137 3.863 12 N -0.649 5.649 13 C 0.520 3.480 14 O -0.555 6.555 15 C -0.160 4.160 16 C -0.541 4.541 17 S 2.411 3.589 18 O -0.940 6.940 19 O -0.976 6.976 20 C -0.542 4.542 21 C -0.218 4.218 22 C -0.107 4.107 23 C -0.070 4.070 24 F -0.171 7.171 25 H 0.289 0.711 26 H 0.128 0.872 27 H 0.426 0.574 28 H 0.184 0.816 29 H 0.140 0.860 30 H 0.175 0.825 31 H 0.195 0.805 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -6.147 7.260 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.523 4.523 8 H 0.087 0.913 9 C 0.056 3.944 10 C -0.182 4.182 11 C 0.043 3.957 12 N -0.295 5.295 13 C 0.306 3.694 14 O -0.431 6.431 15 C -0.184 4.184 16 C -0.670 4.670 17 S 2.597 3.403 18 O -0.937 6.937 19 O -0.973 6.973 20 C -0.672 4.672 21 C -0.239 4.239 22 C -0.126 4.126 23 C -0.090 4.090 24 F -0.151 7.151 25 H 0.099 0.901 26 H 0.146 0.854 27 H 0.265 0.735 28 H 0.201 0.799 29 H 0.158 0.842 30 H 0.193 0.807 31 H 0.213 0.787 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.422 -4.990 7.947 15.568 hybrid contribution 1.595 0.086 -0.942 1.854 sum -10.827 -4.904 7.005 13.797 Atomic orbital electron populations 1.69792 1.08569 1.30509 1.35422 1.26663 0.95763 1.04237 0.91270 0.85220 0.79016 0.75947 0.79715 1.18223 1.18662 1.18665 1.19646 0.96006 0.91873 1.44749 0.91312 1.17887 0.93582 0.92082 0.90828 1.21235 0.98693 0.97367 1.00942 1.17725 0.89446 0.93700 0.94845 1.43212 1.18552 1.38948 1.28792 1.20608 0.89308 0.79403 0.80060 1.90790 1.42030 1.42654 1.67670 1.23616 0.93761 1.06242 0.94807 1.30930 1.23764 1.06648 1.05704 1.09301 0.77574 0.73908 0.79537 1.93637 1.61315 1.69729 1.69007 1.93550 1.85165 1.33598 1.85028 1.31028 1.04782 1.14865 1.16561 1.20390 0.99676 0.96423 1.07368 1.20683 0.96084 0.95679 1.00176 1.18313 0.90135 0.96567 1.04001 1.91233 1.51319 1.97505 1.75006 0.90054 0.85399 0.73542 0.79912 0.84206 0.80690 0.78697 0.83708 0.83196 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.28 10.82 21.82 0.24 -43.05 16 2 C 0.04 1.88 5.25 85.25 0.45 2.33 16 3 Si 0.98 40.42 29.57 68.60 2.03 42.45 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.49 -28.23 8.76 23.43 0.21 -28.03 16 8 H 0.07 3.93 7.76 -2.91 -0.02 3.91 16 9 C 0.06 3.34 5.56 -21.26 -0.12 3.22 16 10 C -0.16 -8.34 7.26 22.83 0.17 -8.17 16 11 C 0.14 5.63 6.26 38.08 0.24 5.86 16 12 N -0.65 -19.18 5.34 -303.61 -1.62 -20.80 16 13 C 0.52 15.79 6.92 87.66 0.61 16.39 16 14 O -0.55 -23.48 13.42 -3.07 -0.04 -23.52 16 15 C -0.16 -2.66 3.21 -9.55 -0.03 -2.70 16 16 C -0.54 -9.12 8.20 72.98 0.60 -8.52 16 17 S 2.41 38.49 6.81 -56.49 -0.38 38.10 16 18 O -0.94 -18.14 18.18 -127.73 -2.32 -20.46 16 19 O -0.98 -25.27 18.18 -127.73 -2.32 -27.60 16 20 C -0.54 -6.95 8.49 72.98 0.62 -6.33 16 21 C -0.22 -8.05 9.96 22.57 0.22 -7.82 16 22 C -0.11 -4.45 10.00 22.25 0.22 -4.22 16 23 C -0.07 -3.57 7.31 22.89 0.17 -3.41 16 24 F -0.17 -8.86 16.75 44.97 0.75 -8.11 16 25 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 26 H 0.13 7.14 4.56 -2.91 -0.01 7.12 16 27 H 0.43 8.01 8.82 -92.71 -0.82 7.20 16 28 H 0.18 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.14 3.15 7.40 -2.39 -0.02 3.13 16 30 H 0.18 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.20 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.14 2.41 8.10 -2.39 -0.02 2.39 16 33 H 0.15 4.07 8.06 -2.91 -0.02 4.04 16 34 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 Total: -1.00 -83.78 313.05 0.03 -83.75 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.36 Total: 20.62 kcal Atomic # 6 Polarization: -44.73 SS G_CDS: 3.35 Total: -41.38 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -1.39 Total: -63.85 kcal Atomic # 8 Polarization: -66.89 SS G_CDS: -4.69 Total: -71.58 kcal Atomic # 9 Polarization: -8.86 SS G_CDS: 0.75 Total: -8.11 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Atomic # 16 Polarization: 38.49 SS G_CDS: -0.38 Total: 38.10 kcal Total: -83.78 0.03 -83.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182816213.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.169 kcal (2) G-P(sol) polarization free energy of solvation -83.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds