Wall clock time and date at job start Tue Mar 31 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.38403 * 119.99824 * 64.99983 * 12 9 7 14 14 N 1.32903 * 120.76988 * 0.02562 * 13 12 9 15 15 C 1.32042 * 121.19055 * 180.02562 * 14 13 12 16 16 N 1.31649 * 122.46081 * 359.97438 * 15 14 13 17 17 C 1.32883 * 120.64281 * 0.02562 * 16 15 14 18 18 C 1.40510 * 120.76898 * 179.72204 * 13 12 9 19 19 N 1.35470 * 134.69775 * 359.97438 * 18 13 12 20 20 C 1.30140 * 109.44111 * 180.02562 * 19 18 13 21 21 N 1.36327 * 109.97436 * 359.49940 * 20 19 18 22 22 C 1.46505 * 126.27415 * 179.90411 * 21 20 19 23 23 C 1.53000 * 109.47505 * 265.80086 * 22 21 20 24 24 O 1.42895 * 109.47209 * 180.02562 * 23 22 21 25 25 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00132 * 245.00181 * 12 9 7 27 27 H 1.08004 * 118.77175 * 179.97438 * 15 14 13 28 28 H 1.07998 * 125.01106 * 179.97438 * 20 19 18 29 29 H 1.09002 * 109.46923 * 25.80091 * 22 21 20 30 30 H 1.09001 * 109.46983 * 145.79435 * 22 21 20 31 31 H 1.08997 * 109.46772 * 300.00313 * 23 22 21 32 32 H 1.08998 * 109.46814 * 59.99669 * 23 22 21 33 33 H 0.96696 * 114.00077 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 3.0949 -4.1021 1.0732 14 7 3.0183 -3.2959 2.1270 15 6 3.8222 -3.4470 3.1636 16 7 4.7364 -4.3929 3.2167 17 6 4.8871 -5.2465 2.2096 18 6 4.0512 -5.1315 1.0858 19 7 4.4040 -6.1149 0.2235 20 6 5.3752 -6.8130 0.7364 21 7 5.7138 -6.3122 1.9583 22 6 6.7590 -6.8268 2.8467 23 6 6.1409 -7.8029 3.8497 24 8 7.1603 -8.3043 4.7165 25 1 -0.4849 0.8401 0.0004 26 1 2.3136 -4.5305 -0.7720 27 1 3.7262 -2.7694 3.9991 28 1 5.8486 -7.6591 0.2606 29 1 7.5158 -7.3433 2.2562 30 1 7.2203 -5.9978 3.3833 31 1 5.3841 -7.2864 4.4401 32 1 5.6797 -8.6318 3.3129 33 1 6.8396 -8.9308 5.3796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192938917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:49 Heat of formation + Delta-G solvation = -28.419189 kcal Electronic energy + Delta-G solvation = -23658.322450 eV Core-core repulsion = 19847.323509 eV Total energy + Delta-G solvation = -3810.998942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -42.55219 -39.27730 -37.48655 -35.80877 -35.25375 -34.18751 -34.03060 -33.06710 -31.90154 -29.33414 -29.21270 -26.12423 -24.25124 -24.14234 -23.14587 -20.89837 -19.44499 -18.77428 -18.30623 -17.75420 -17.07986 -16.75192 -16.23134 -16.10126 -15.60753 -15.06536 -14.79221 -14.67573 -14.36022 -14.04573 -13.93718 -13.53937 -13.27375 -12.64460 -12.20430 -12.04128 -11.85320 -11.53140 -11.28146 -11.19757 -10.84561 -10.56164 -10.53102 -10.36447 -10.28390 -10.17731 -10.13922 -9.28634 -9.21829 -8.86873 -8.79268 -8.03642 -6.68435 -5.26991 0.88037 1.46308 1.96063 2.11533 2.67702 3.09236 3.16493 3.24686 3.67629 3.81020 4.03644 4.07579 4.14779 4.22404 4.24227 4.60669 4.65916 4.70682 4.77869 4.82736 5.10553 5.12574 5.29676 5.63392 5.71746 5.83352 6.25668 6.43710 6.54774 6.74747 7.04838 7.06572 7.34377 7.54758 7.63786 7.99388 8.44108 8.91380 10.26935 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.003943 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.379778 B = 7099.292756 C = 7576.933709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.134 3.866 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.991 4.991 8 H 0.102 0.898 9 S 2.691 3.309 10 O -0.968 6.968 11 O -0.993 6.993 12 N -1.022 6.022 13 C 0.519 3.481 14 N -0.540 5.540 15 C 0.368 3.632 16 N -0.558 5.558 17 C 0.299 3.701 18 C -0.098 4.098 19 N -0.456 5.456 20 C 0.248 3.752 21 N -0.477 5.477 22 C 0.118 3.882 23 C 0.062 3.938 24 O -0.569 6.569 25 H 0.290 0.710 26 H 0.429 0.571 27 H 0.211 0.789 28 H 0.223 0.777 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.906 -14.086 6.238 20.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.083 4.083 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.195 1.195 7 C -1.126 5.126 8 H 0.120 0.880 9 S 2.792 3.208 10 O -0.957 6.957 11 O -0.983 6.983 12 N -0.760 5.760 13 C 0.267 3.733 14 N -0.265 5.265 15 C 0.078 3.922 16 N -0.283 5.283 17 C 0.058 3.942 18 C -0.225 4.225 19 N -0.174 5.174 20 C -0.039 4.039 21 N -0.173 5.173 22 C -0.005 4.005 23 C -0.017 4.017 24 O -0.375 6.375 25 H 0.101 0.899 26 H 0.264 0.736 27 H 0.227 0.773 28 H 0.239 0.761 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 12.692 -13.232 5.968 19.282 hybrid contribution 1.109 0.028 0.034 1.110 sum 13.801 -13.203 6.002 20.021 Atomic orbital electron populations 1.69896 1.06724 1.30658 1.40438 1.24706 0.94473 1.00684 0.88456 0.86070 0.80374 0.80197 0.78485 1.18721 1.19730 1.19502 1.30153 1.05741 1.10336 1.66368 0.88024 1.01497 0.72224 0.73745 0.73301 1.93405 1.71610 1.86388 1.44333 1.93424 1.71650 1.87215 1.46008 1.54575 1.49246 1.49429 1.22703 1.17573 0.83933 0.85252 0.86529 1.68317 1.28851 1.27924 1.01372 1.24669 0.83167 0.90408 0.93966 1.67335 1.25613 1.07287 1.28035 1.18770 0.91755 0.90956 0.92725 1.19807 1.04114 1.02178 0.96415 1.70222 1.12749 1.05626 1.28800 1.25394 0.95582 1.00101 0.82814 1.44894 1.30206 1.24689 1.17500 1.21509 0.88040 0.98989 0.91943 1.22412 0.90419 0.96494 0.92371 1.86360 1.36350 1.65526 1.49245 0.89915 0.73625 0.77296 0.76094 0.87762 0.87868 0.92447 0.92929 0.76389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.79 13.19 55.43 0.73 -24.06 16 2 C 0.13 3.75 5.46 -17.82 -0.10 3.66 16 3 Si 0.92 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.99 -27.56 9.37 30.60 0.29 -27.27 16 8 H 0.10 2.67 7.81 -52.49 -0.41 2.26 16 9 S 2.69 72.67 4.66 -107.50 -0.50 72.17 16 10 O -0.97 -28.41 16.93 -57.17 -0.97 -29.37 16 11 O -0.99 -28.95 18.02 -57.17 -1.03 -29.98 16 12 N -1.02 -22.13 5.83 31.37 0.18 -21.95 16 13 C 0.52 10.78 7.39 -154.65 -1.14 9.64 16 14 N -0.54 -11.41 8.54 -13.61 -0.12 -11.53 16 15 C 0.37 6.25 12.25 -92.06 -1.13 5.12 16 16 N -0.56 -8.95 10.47 -13.90 -0.15 -9.09 16 17 C 0.30 4.72 8.05 -155.81 -1.25 3.47 16 18 C -0.10 -1.75 7.17 -84.54 -0.61 -2.36 16 19 N -0.46 -6.95 11.28 -11.84 -0.13 -7.08 16 20 C 0.25 2.63 12.51 -89.49 -1.12 1.51 16 21 N -0.48 -5.44 2.79 -117.62 -0.33 -5.77 16 22 C 0.12 0.95 6.53 -4.04 -0.03 0.93 16 23 C 0.06 0.46 7.37 37.16 0.27 0.74 16 24 O -0.57 -3.98 13.66 -35.23 -0.48 -4.46 16 25 H 0.29 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.43 8.04 8.85 -34.47 -0.31 7.73 16 27 H 0.21 2.72 8.06 -52.48 -0.42 2.29 16 28 H 0.22 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.39 1.07 9.12 45.56 0.42 1.49 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -39.23 315.09 -9.85 -49.07 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -1.97 Total: 6.10 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -4.81 Total: -4.58 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: 0.19 Total: -79.48 kcal Atomic # 8 Polarization: -61.34 SS G_CDS: -2.48 Total: -63.82 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 72.67 SS G_CDS: -0.50 Total: 72.17 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -39.23 -9.85 -49.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.654 kcal (2) G-P(sol) polarization free energy of solvation -39.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds