Wall clock time and date at job start Tue Mar 31 2020 04:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00218 * 2 1 4 4 H 1.48500 * 109.47351 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47211 * 300.00619 * 3 2 1 6 6 H 1.48509 * 109.46987 * 59.99968 * 3 2 1 7 7 C 1.37880 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99680 * 179.72407 * 7 2 1 9 9 S 1.76199 * 120.00013 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40031 * 293.26670 * 9 7 2 11 11 O 1.42101 * 106.40156 * 66.18411 * 9 7 2 12 12 N 1.65598 * 107.21820 * 179.72553 * 9 7 2 13 13 C 1.38403 * 119.99824 * 64.99983 * 12 9 7 14 14 N 1.32903 * 120.76988 * 0.02562 * 13 12 9 15 15 C 1.32042 * 121.19055 * 180.02562 * 14 13 12 16 16 N 1.31649 * 122.46081 * 359.97438 * 15 14 13 17 17 C 1.32883 * 120.64281 * 0.02562 * 16 15 14 18 18 C 1.40510 * 120.76898 * 179.72204 * 13 12 9 19 19 N 1.35470 * 134.69775 * 359.97438 * 18 13 12 20 20 C 1.30140 * 109.44111 * 180.02562 * 19 18 13 21 21 N 1.36327 * 109.97436 * 359.49940 * 20 19 18 22 22 C 1.46505 * 126.27415 * 179.90411 * 21 20 19 23 23 C 1.53000 * 109.47505 * 265.80086 * 22 21 20 24 24 O 1.42895 * 109.47209 * 180.02562 * 23 22 21 25 25 H 0.97000 * 119.99443 * 359.97438 * 1 2 3 26 26 H 0.96994 * 120.00132 * 245.00181 * 12 9 7 27 27 H 1.08004 * 118.77175 * 179.97438 * 15 14 13 28 28 H 1.07998 * 125.01106 * 179.97438 * 20 19 18 29 29 H 1.09002 * 109.46923 * 25.80091 * 22 21 20 30 30 H 1.09001 * 109.46983 * 145.79435 * 22 21 20 31 31 H 1.08997 * 109.46772 * 300.00313 * 23 22 21 32 32 H 1.08998 * 109.46814 * 59.99669 * 23 22 21 33 33 H 0.96696 * 114.00077 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 16 1.1235 -2.7200 -0.0005 10 8 0.4570 -2.7985 1.2520 11 8 0.4457 -2.7920 -1.2474 12 7 2.2482 -3.9354 -0.0088 13 6 3.0949 -4.1021 1.0732 14 7 3.0183 -3.2959 2.1270 15 6 3.8222 -3.4470 3.1636 16 7 4.7364 -4.3929 3.2167 17 6 4.8871 -5.2465 2.2096 18 6 4.0512 -5.1315 1.0858 19 7 4.4040 -6.1149 0.2235 20 6 5.3752 -6.8130 0.7364 21 7 5.7138 -6.3122 1.9583 22 6 6.7590 -6.8268 2.8467 23 6 6.1409 -7.8029 3.8497 24 8 7.1603 -8.3043 4.7165 25 1 -0.4849 0.8401 0.0004 26 1 2.3136 -4.5305 -0.7720 27 1 3.7262 -2.7694 3.9991 28 1 5.8486 -7.6591 0.2606 29 1 7.5158 -7.3433 2.2562 30 1 7.2203 -5.9978 3.3833 31 1 5.3841 -7.2864 4.4401 32 1 5.6797 -8.6318 3.3129 33 1 6.8396 -8.9308 5.3796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192938917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:12:48 Heat of formation + Delta-G solvation = -61.148027 kcal Electronic energy + Delta-G solvation = -23659.741679 eV Core-core repulsion = 19847.323509 eV Total energy + Delta-G solvation = -3812.418171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.69385 -40.54190 -38.06758 -37.55738 -37.13516 -36.24442 -35.23256 -35.08519 -33.30980 -30.58044 -30.03852 -28.27524 -25.48929 -25.22048 -24.06905 -22.05318 -21.28805 -20.06032 -19.80680 -18.86475 -18.43500 -18.30137 -17.73725 -17.31499 -16.92374 -16.24098 -16.11273 -15.97393 -15.72787 -15.51179 -15.44190 -15.00089 -14.38312 -14.02640 -13.53032 -13.36163 -13.24863 -13.02947 -12.97313 -12.65324 -12.62912 -12.56654 -12.45498 -12.29058 -11.50612 -11.47260 -11.23572 -11.04109 -10.90223 -10.45675 -10.20986 -9.36790 -8.75242 -7.45133 -0.38192 0.02332 0.13600 1.11822 1.34181 1.35199 1.52980 1.65243 2.13797 2.32947 2.59251 2.73038 2.83757 2.92235 3.20397 3.44278 3.52800 3.63712 3.77614 3.92952 4.08336 4.27248 4.31186 4.37979 4.50851 4.72593 4.75565 5.01955 5.26772 5.28391 5.52371 5.78701 5.88253 6.15434 6.55958 6.75547 6.78226 7.09317 8.22996 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.024145 B = 0.003943 C = 0.003695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.379778 B = 7099.292756 C = 7576.933709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.994 3.006 4 H -0.255 1.255 5 H -0.257 1.257 6 H -0.255 1.255 7 C -1.008 5.008 8 H 0.109 0.891 9 S 2.706 3.294 10 O -1.003 7.003 11 O -1.027 7.027 12 N -1.019 6.019 13 C 0.482 3.518 14 N -0.578 5.578 15 C 0.354 3.646 16 N -0.543 5.543 17 C 0.287 3.713 18 C -0.104 4.104 19 N -0.499 5.499 20 C 0.289 3.711 21 N -0.468 5.468 22 C 0.114 3.886 23 C 0.069 3.931 24 O -0.580 6.580 25 H 0.300 0.700 26 H 0.438 0.562 27 H 0.240 0.760 28 H 0.285 0.715 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.184 -15.379 6.616 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.812 3.188 4 H -0.178 1.178 5 H -0.181 1.181 6 H -0.179 1.179 7 C -1.143 5.143 8 H 0.127 0.873 9 S 2.808 3.192 10 O -0.993 6.993 11 O -1.018 7.018 12 N -0.762 5.762 13 C 0.233 3.767 14 N -0.304 5.304 15 C 0.064 3.936 16 N -0.266 5.266 17 C 0.043 3.957 18 C -0.231 4.231 19 N -0.218 5.218 20 C 0.003 3.997 21 N -0.162 5.162 22 C -0.007 4.007 23 C -0.010 4.010 24 O -0.388 6.388 25 H 0.110 0.890 26 H 0.275 0.725 27 H 0.256 0.744 28 H 0.301 0.699 29 H 0.162 0.838 30 H 0.110 0.890 31 H 0.052 0.948 32 H 0.088 0.912 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 15.992 -14.576 6.390 22.562 hybrid contribution 0.285 0.155 -0.009 0.324 sum 16.277 -14.420 6.381 22.663 Atomic orbital electron populations 1.69974 1.08563 1.32356 1.41476 1.25930 0.95400 1.04957 0.87478 0.85055 0.79058 0.75079 0.79588 1.17832 1.18130 1.17921 1.30402 1.06204 1.11136 1.66509 0.87278 1.00680 0.72388 0.74104 0.72010 1.93344 1.73314 1.87166 1.45460 1.93363 1.73376 1.87986 1.47047 1.53785 1.49476 1.48937 1.24044 1.17741 0.85342 0.87236 0.86427 1.68214 1.30446 1.29205 1.02492 1.25242 0.83081 0.91393 0.93921 1.67418 1.24657 1.06786 1.27772 1.19096 0.92467 0.92085 0.92033 1.19780 1.03501 1.02020 0.97768 1.70254 1.15520 1.06467 1.29585 1.26730 0.92593 0.99010 0.81343 1.45210 1.29765 1.23117 1.18140 1.21815 0.87544 0.99006 0.92322 1.22269 0.89913 0.96684 0.92171 1.86315 1.36459 1.66195 1.49856 0.88952 0.72496 0.74432 0.69940 0.83761 0.88958 0.94778 0.91165 0.74306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.55 13.19 21.45 0.28 -53.26 16 2 C 0.08 4.26 5.46 84.66 0.46 4.72 16 3 Si 0.99 42.38 29.54 68.60 2.03 44.41 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 6 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 7 C -1.01 -57.52 9.37 67.73 0.63 -56.89 16 8 H 0.11 5.86 7.81 -2.91 -0.02 5.84 16 9 S 2.71 152.82 4.66 -56.49 -0.26 152.55 16 10 O -1.00 -61.88 16.93 -128.00 -2.17 -64.05 16 11 O -1.03 -62.75 18.02 -128.00 -2.31 -65.06 16 12 N -1.02 -46.14 5.83 -54.65 -0.32 -46.46 16 13 C 0.48 20.63 7.39 133.45 0.99 21.62 16 14 N -0.58 -25.23 8.54 -196.96 -1.68 -26.91 16 15 C 0.35 12.12 12.25 180.85 2.22 14.33 16 16 N -0.54 -17.03 10.47 -197.89 -2.07 -19.10 16 17 C 0.29 8.64 8.05 133.87 1.08 9.72 16 18 C -0.10 -3.69 7.17 39.69 0.28 -3.40 16 19 N -0.50 -14.25 11.28 -191.39 -2.16 -16.41 16 20 C 0.29 4.88 12.51 179.95 2.25 7.13 16 21 N -0.47 -9.05 2.79 -526.02 -1.47 -10.51 16 22 C 0.11 1.38 6.53 86.38 0.56 1.95 16 23 C 0.07 0.80 7.37 71.98 0.53 1.33 16 24 O -0.58 -6.21 13.66 -148.98 -2.03 -8.25 16 25 H 0.30 16.06 8.31 -92.71 -0.77 15.29 16 26 H 0.44 17.27 8.85 -96.75 -0.86 16.41 16 27 H 0.24 6.19 8.06 -2.91 -0.02 6.16 16 28 H 0.29 0.83 8.06 -2.91 -0.02 0.80 16 29 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.41 1.05 9.12 -74.06 -0.68 0.37 16 Total: -1.00 -89.74 315.09 -3.48 -93.22 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -0.33 Total: 19.33 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 9.01 Total: 0.50 kcal Atomic # 7 Polarization: -165.24 SS G_CDS: -7.41 Total: -172.65 kcal Atomic # 8 Polarization: -130.85 SS G_CDS: -6.51 Total: -137.36 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 152.82 SS G_CDS: -0.26 Total: 152.55 kcal Total: -89.74 -3.48 -93.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192938917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.070 kcal (2) G-P(sol) polarization free energy of solvation -89.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds