Wall clock time and date at job start Tue Mar 31 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48504 * 109.46579 * 269.99917 * 3 2 1 5 5 H 1.48500 * 109.47012 * 29.99316 * 3 2 1 6 6 H 1.48497 * 109.47251 * 149.99697 * 3 2 1 7 7 C 1.37884 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99295 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00039 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40316 * 66.45928 * 9 7 2 11 11 O 1.42096 * 106.40188 * 293.53966 * 9 7 2 12 12 N 1.65595 * 107.21565 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00152 * 90.00070 * 12 9 7 14 14 C 1.50698 * 109.47280 * 94.99832 * 13 12 9 15 15 C 1.34336 * 126.16645 * 95.00343 * 14 13 12 16 16 O 1.34750 * 107.11079 * 180.28825 * 15 14 13 17 17 C 1.33966 * 107.75844 * 359.56936 * 16 15 14 18 18 N 1.30260 * 108.75977 * 0.43881 * 17 16 15 19 19 C 1.46506 * 120.00201 * 269.99924 * 12 9 7 20 20 C 1.50694 * 109.46962 * 265.00264 * 19 12 9 21 21 C 1.34329 * 126.16640 * 95.00367 * 20 19 12 22 22 O 1.34758 * 107.11434 * 179.97438 * 21 20 19 23 23 C 1.33976 * 107.75389 * 359.97438 * 22 21 20 24 24 N 1.30258 * 108.75640 * 359.72677 * 23 22 21 25 25 H 0.97006 * 119.99439 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47190 * 335.00001 * 13 12 9 27 27 H 1.09001 * 109.47625 * 215.00091 * 13 12 9 28 28 H 1.08002 * 126.43952 * 0.02562 * 15 14 13 29 29 H 1.07994 * 125.61930 * 180.16564 * 17 16 15 30 30 H 1.08998 * 109.46491 * 25.00236 * 19 12 9 31 31 H 1.08998 * 109.46980 * 144.99799 * 19 12 9 32 32 H 1.07998 * 126.44480 * 359.97438 * 21 20 19 33 33 H 1.07998 * 125.61460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2480 -3.9354 0.0005 13 6 2.7455 -4.4731 1.2692 14 6 1.9501 -5.6975 1.6424 15 6 2.2855 -6.9714 1.3791 16 8 1.3043 -7.7503 1.8753 17 6 0.3921 -6.9482 2.4403 18 7 0.7763 -5.7117 2.2985 19 6 2.7456 -4.4731 -1.2682 20 6 1.9501 -5.6974 -1.6413 21 6 0.8813 -5.7310 -2.4543 22 8 0.4730 -7.0136 -2.5199 23 6 1.2929 -7.7431 -1.7514 24 7 2.1867 -6.9545 -1.2261 25 1 -0.4849 0.8401 -0.0004 26 1 2.6399 -3.7194 2.0496 27 1 3.7967 -4.7412 1.1631 28 1 3.1725 -7.3076 0.8628 29 1 -0.5148 -7.2730 2.9286 30 1 2.6399 -3.7194 -2.0485 31 1 3.7967 -4.7412 -1.1619 32 1 0.4334 -4.8885 -2.9602 33 1 1.2267 -8.8099 -1.5971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192965225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:02 Heat of formation + Delta-G solvation = -22.265216 kcal Electronic energy + Delta-G solvation = -24939.176764 eV Core-core repulsion = 21096.151928 eV Total energy + Delta-G solvation = -3843.024836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -43.09954 -42.79045 -36.53996 -35.28722 -34.51568 -33.84799 -33.72924 -33.03338 -30.92684 -29.52021 -26.87950 -26.10906 -24.50284 -22.59259 -22.19922 -20.97573 -20.82018 -18.77266 -17.75536 -17.19965 -16.92061 -16.30216 -16.15983 -15.99771 -15.13575 -15.07038 -14.86709 -14.65644 -14.31003 -13.84700 -13.67618 -13.17418 -13.16028 -12.48029 -11.99333 -11.87044 -11.48361 -11.24173 -11.21103 -11.09871 -10.70851 -10.59701 -10.41636 -10.24046 -10.16559 -10.00620 -9.90686 -9.23409 -8.96005 -8.69777 -8.47224 -8.29887 -6.68219 -5.30898 1.73653 1.86742 2.28799 2.93253 3.06981 3.13565 3.14458 3.19870 3.24766 3.30211 4.07760 4.32199 4.57877 4.65634 4.66685 5.10600 5.28249 5.31990 5.42407 5.76709 5.79402 5.85043 5.93133 6.04390 6.13060 6.19451 6.21175 6.33541 6.46788 6.50754 6.69811 6.74912 7.33170 7.53832 7.91237 7.97764 8.24407 8.90209 10.25103 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.005746 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.406333 B = 4871.845312 C = 5559.930050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.133 3.867 3 Si 0.918 3.082 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.024 5.024 8 H 0.102 0.898 9 S 2.709 3.291 10 O -1.008 7.008 11 O -0.979 6.979 12 N -0.998 5.998 13 C 0.211 3.789 14 C -0.040 4.040 15 C -0.029 4.029 16 O -0.217 6.217 17 C 0.135 3.865 18 N -0.446 5.446 19 C 0.208 3.792 20 C -0.036 4.036 21 C -0.042 4.042 22 O -0.210 6.210 23 C 0.150 3.850 24 N -0.474 5.474 25 H 0.290 0.710 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.217 0.783 29 H 0.240 0.760 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.224 0.776 33 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.929 -13.606 -1.575 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.157 5.157 8 H 0.120 0.880 9 S 2.810 3.190 10 O -0.998 6.998 11 O -0.969 6.969 12 N -0.830 5.830 13 C 0.084 3.916 14 C -0.162 4.162 15 C -0.101 4.101 16 O -0.104 6.104 17 C -0.092 4.092 18 N -0.175 5.175 19 C 0.081 3.919 20 C -0.156 4.156 21 C -0.113 4.113 22 O -0.095 6.095 23 C -0.077 4.077 24 N -0.204 5.204 25 H 0.101 0.899 26 H 0.117 0.883 27 H 0.103 0.897 28 H 0.233 0.767 29 H 0.256 0.744 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.240 0.760 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.937 -13.378 -0.977 14.294 hybrid contribution 0.553 0.699 -0.676 1.119 sum 5.490 -12.679 -1.653 13.915 Atomic orbital electron populations 1.69908 1.06774 1.30666 1.40060 1.24744 0.94439 1.00731 0.88533 0.86199 0.80263 0.80180 0.79149 1.19203 1.19970 1.18594 1.30677 1.06147 1.11942 1.66909 0.87983 1.00854 0.72200 0.72816 0.73147 1.93303 1.72580 1.87695 1.46244 1.93430 1.71735 1.86967 1.44739 1.58287 1.63328 1.52941 1.08466 1.19252 0.94774 0.91510 0.86021 1.22275 0.94938 0.96181 1.02786 1.24922 0.94475 0.89856 1.00825 1.84422 1.28578 1.40223 1.57128 1.28022 0.96603 0.83932 1.00635 1.70534 1.11079 1.20797 1.15053 1.19324 0.96173 0.89854 0.86588 1.22334 0.99470 0.94023 0.99787 1.25273 0.98077 0.84260 1.03697 1.84477 1.50047 1.19105 1.55906 1.27873 0.87675 0.99437 0.92740 1.70200 1.25538 1.01588 1.23054 0.89937 0.88288 0.89705 0.76679 0.74382 0.88008 0.89586 0.75980 0.74310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.82 13.19 55.43 0.73 -24.09 16 2 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 3 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 7 C -1.02 -27.79 9.75 30.60 0.30 -27.50 16 8 H 0.10 2.51 7.81 -52.49 -0.41 2.10 16 9 S 2.71 71.37 4.88 -107.50 -0.52 70.84 16 10 O -1.01 -28.03 16.83 -57.18 -0.96 -28.99 16 11 O -0.98 -29.05 16.99 -57.18 -0.97 -30.02 16 12 N -1.00 -20.03 2.79 -116.95 -0.33 -20.36 16 13 C 0.21 3.79 5.91 -5.20 -0.03 3.76 16 14 C -0.04 -0.73 6.20 -82.81 -0.51 -1.25 16 15 C -0.03 -0.42 9.32 29.36 0.27 -0.15 16 16 O -0.22 -3.14 10.77 5.37 0.06 -3.09 16 17 C 0.14 2.06 13.23 52.10 0.69 2.75 16 18 N -0.45 -8.90 11.29 -11.18 -0.13 -9.03 16 19 C 0.21 3.46 5.91 -5.19 -0.03 3.43 16 20 C -0.04 -0.59 6.20 -82.82 -0.51 -1.10 16 21 C -0.04 -0.69 11.99 29.35 0.35 -0.34 16 22 O -0.21 -3.11 10.78 5.32 0.06 -3.05 16 23 C 0.15 1.87 13.23 52.09 0.69 2.56 16 24 N -0.47 -6.86 7.58 -11.18 -0.08 -6.94 16 25 H 0.29 7.68 8.31 -40.82 -0.34 7.34 16 26 H 0.10 1.92 7.61 -51.93 -0.40 1.53 16 27 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 28 H 0.22 2.65 7.31 -52.49 -0.38 2.26 16 29 H 0.24 2.49 8.06 -52.49 -0.42 2.07 16 30 H 0.10 1.68 7.61 -51.93 -0.40 1.28 16 31 H 0.09 1.14 8.00 -51.93 -0.42 0.73 16 32 H 0.22 3.63 7.99 -52.49 -0.42 3.21 16 33 H 0.24 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 311.91 15.07 4.70 4.70 Total: -1.00 -38.06 311.91 -4.17 -42.22 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -2.81 Total: 6.65 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 1.12 Total: -14.22 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.19 Total: -60.42 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -1.82 Total: -65.15 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 71.37 SS G_CDS: -0.52 Total: 70.84 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -38.06 -4.17 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.957 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds