Wall clock time and date at job start Tue Mar 31 2020 04:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00387 * 2 1 4 4 H 1.48504 * 109.46579 * 269.99917 * 3 2 1 5 5 H 1.48500 * 109.47012 * 29.99316 * 3 2 1 6 6 H 1.48497 * 109.47251 * 149.99697 * 3 2 1 7 7 C 1.37884 * 119.99465 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99295 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00039 * 0.02562 * 7 2 1 10 10 O 1.42095 * 106.40316 * 66.45928 * 9 7 2 11 11 O 1.42096 * 106.40188 * 293.53966 * 9 7 2 12 12 N 1.65595 * 107.21565 * 179.97438 * 9 7 2 13 13 C 1.46498 * 120.00152 * 90.00070 * 12 9 7 14 14 C 1.50698 * 109.47280 * 94.99832 * 13 12 9 15 15 C 1.34336 * 126.16645 * 95.00343 * 14 13 12 16 16 O 1.34750 * 107.11079 * 180.28825 * 15 14 13 17 17 C 1.33966 * 107.75844 * 359.56936 * 16 15 14 18 18 N 1.30260 * 108.75977 * 0.43881 * 17 16 15 19 19 C 1.46506 * 120.00201 * 269.99924 * 12 9 7 20 20 C 1.50694 * 109.46962 * 265.00264 * 19 12 9 21 21 C 1.34329 * 126.16640 * 95.00367 * 20 19 12 22 22 O 1.34758 * 107.11434 * 179.97438 * 21 20 19 23 23 C 1.33976 * 107.75389 * 359.97438 * 22 21 20 24 24 N 1.30258 * 108.75640 * 359.72677 * 23 22 21 25 25 H 0.97006 * 119.99439 * 0.02562 * 1 2 3 26 26 H 1.09007 * 109.47190 * 335.00001 * 13 12 9 27 27 H 1.09001 * 109.47625 * 215.00091 * 13 12 9 28 28 H 1.08002 * 126.43952 * 0.02562 * 15 14 13 29 29 H 1.07994 * 125.61930 * 180.16564 * 17 16 15 30 30 H 1.08998 * 109.46491 * 25.00236 * 19 12 9 31 31 H 1.08998 * 109.46980 * 144.99799 * 19 12 9 32 32 H 1.07998 * 126.44480 * 359.97438 * 21 20 19 33 33 H 1.07998 * 125.61460 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0462 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4517 -2.7955 -1.2494 11 8 0.4508 -2.7950 1.2500 12 7 2.2480 -3.9354 0.0005 13 6 2.7455 -4.4731 1.2692 14 6 1.9501 -5.6975 1.6424 15 6 2.2855 -6.9714 1.3791 16 8 1.3043 -7.7503 1.8753 17 6 0.3921 -6.9482 2.4403 18 7 0.7763 -5.7117 2.2985 19 6 2.7456 -4.4731 -1.2682 20 6 1.9501 -5.6974 -1.6413 21 6 0.8813 -5.7310 -2.4543 22 8 0.4730 -7.0136 -2.5199 23 6 1.2929 -7.7431 -1.7514 24 7 2.1867 -6.9545 -1.2261 25 1 -0.4849 0.8401 -0.0004 26 1 2.6399 -3.7194 2.0496 27 1 3.7967 -4.7412 1.1631 28 1 3.1725 -7.3076 0.8628 29 1 -0.5148 -7.2730 2.9286 30 1 2.6399 -3.7194 -2.0485 31 1 3.7967 -4.7412 -1.1619 32 1 0.4334 -4.8885 -2.9602 33 1 1.2267 -8.8099 -1.5971 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192965225.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:02 Heat of formation + Delta-G solvation = -56.913691 kcal Electronic energy + Delta-G solvation = -24940.679235 eV Core-core repulsion = 21096.151928 eV Total energy + Delta-G solvation = -3844.527307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.25025 -43.98270 -37.93203 -37.36158 -35.99202 -35.76467 -35.17223 -34.95604 -32.17155 -30.76687 -28.22537 -28.15360 -25.90207 -23.69718 -23.36670 -22.20865 -22.12755 -20.76712 -19.26849 -18.45218 -18.29936 -18.19141 -17.38882 -17.27134 -16.98139 -16.58551 -16.16929 -15.87193 -15.73994 -15.30139 -15.18726 -14.93435 -14.45637 -13.93787 -13.79910 -13.46925 -13.12660 -12.99648 -12.83409 -12.45740 -12.34895 -12.29208 -12.17392 -11.98189 -11.84594 -11.55499 -11.23341 -11.20903 -10.91211 -10.13376 -9.83348 -9.58105 -8.72563 -7.46240 0.25154 0.62524 0.81442 1.34281 1.35129 1.51105 1.72515 1.95843 2.05217 2.18054 2.22973 2.59942 3.00281 3.30735 3.46900 3.82128 3.91734 4.01699 4.13975 4.25635 4.41530 4.44213 4.63589 4.71070 4.77494 4.85096 4.96549 5.04005 5.14130 5.19073 5.32817 5.45140 5.51177 5.92255 5.93012 6.76864 6.80305 7.04151 8.22333 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.019274 B = 0.005746 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.406333 B = 4871.845312 C = 5559.930050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.987 3.013 4 H -0.251 1.251 5 H -0.266 1.266 6 H -0.246 1.246 7 C -1.043 5.043 8 H 0.121 0.879 9 S 2.715 3.285 10 O -1.037 7.037 11 O -1.025 7.025 12 N -0.991 5.991 13 C 0.205 3.795 14 C -0.077 4.077 15 C 0.000 4.000 16 O -0.208 6.208 17 C 0.147 3.853 18 N -0.514 5.514 19 C 0.200 3.800 20 C -0.041 4.041 21 C -0.069 4.069 22 O -0.216 6.216 23 C 0.169 3.831 24 N -0.482 5.482 25 H 0.297 0.703 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.246 0.754 29 H 0.279 0.721 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.211 0.789 33 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.071 -15.306 -1.696 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.805 3.195 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.169 1.169 7 C -1.176 5.176 8 H 0.139 0.861 9 S 2.816 3.184 10 O -1.027 7.027 11 O -1.015 7.015 12 N -0.827 5.827 13 C 0.079 3.921 14 C -0.197 4.197 15 C -0.072 4.072 16 O -0.094 6.094 17 C -0.080 4.080 18 N -0.243 5.243 19 C 0.074 3.926 20 C -0.161 4.161 21 C -0.141 4.141 22 O -0.102 6.102 23 C -0.057 4.057 24 N -0.211 5.211 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.262 0.738 29 H 0.294 0.706 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.228 0.772 33 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges 7.090 -15.085 -1.100 16.705 hybrid contribution -0.119 1.017 -0.627 1.201 sum 6.972 -14.068 -1.727 15.795 Atomic orbital electron populations 1.70015 1.08857 1.32155 1.41692 1.26025 0.95316 1.05363 0.87571 0.85176 0.79240 0.74866 0.80210 1.17529 1.19011 1.16901 1.31076 1.07299 1.12783 1.66483 0.86077 1.00305 0.72770 0.73552 0.71766 1.93251 1.74130 1.88347 1.46948 1.93363 1.73776 1.87874 1.46441 1.57692 1.62402 1.51913 1.10660 1.19500 0.97356 0.91115 0.84097 1.22324 0.95317 0.97295 1.04802 1.25270 0.94547 0.88551 0.98866 1.84458 1.28383 1.39738 1.56814 1.28796 0.97093 0.82944 0.99129 1.70488 1.12925 1.23455 1.17458 1.19611 0.98304 0.89910 0.84747 1.22295 0.99309 0.94811 0.99724 1.25175 0.98914 0.84990 1.05035 1.84482 1.50586 1.18523 1.56590 1.29095 0.85636 1.00906 0.90080 1.70166 1.26424 1.00698 1.23846 0.89304 0.91032 0.84935 0.73826 0.70615 0.88750 0.85501 0.77239 0.69387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.37 13.19 21.45 0.28 -54.09 16 2 C 0.07 3.91 5.46 84.66 0.46 4.38 16 3 Si 0.99 41.39 29.54 68.60 2.03 43.42 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 6 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 7 C -1.04 -57.59 9.75 67.74 0.66 -56.93 16 8 H 0.12 5.95 7.81 -2.91 -0.02 5.92 16 9 S 2.71 147.89 4.88 -56.49 -0.28 147.62 16 10 O -1.04 -60.29 16.83 -128.00 -2.15 -62.45 16 11 O -1.02 -63.78 16.99 -128.00 -2.17 -65.96 16 12 N -0.99 -39.73 2.79 -523.91 -1.46 -41.19 16 13 C 0.21 7.23 5.91 85.63 0.51 7.73 16 14 C -0.08 -2.72 6.20 41.26 0.26 -2.46 16 15 C 0.00 0.00 9.32 66.93 0.62 0.62 16 16 O -0.21 -5.38 10.77 -3.70 -0.04 -5.42 16 17 C 0.15 4.23 13.23 130.48 1.73 5.96 16 18 N -0.51 -20.45 11.29 -304.07 -3.43 -23.88 16 19 C 0.20 6.45 5.91 85.63 0.51 6.96 16 20 C -0.04 -1.32 6.20 41.26 0.26 -1.06 16 21 C -0.07 -2.31 11.99 66.93 0.80 -1.50 16 22 O -0.22 -6.08 10.78 -3.87 -0.04 -6.12 16 23 C 0.17 3.66 13.23 130.48 1.73 5.39 16 24 N -0.48 -12.48 7.58 -304.06 -2.30 -14.78 16 25 H 0.30 16.24 8.31 -92.70 -0.77 15.47 16 26 H 0.07 2.87 7.61 -2.38 -0.02 2.85 16 27 H 0.13 3.24 8.00 -2.39 -0.02 3.22 16 28 H 0.25 4.89 7.31 -2.91 -0.02 4.86 16 29 H 0.28 5.10 8.06 -2.91 -0.02 5.08 16 30 H 0.09 3.14 7.61 -2.39 -0.02 3.12 16 31 H 0.13 3.00 8.00 -2.39 -0.02 2.98 16 32 H 0.21 7.30 7.99 -2.91 -0.02 7.28 16 33 H 0.29 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -87.26 311.91 -0.89 -88.14 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 1.16 Total: 25.62 kcal Atomic # 6 Polarization: -38.45 SS G_CDS: 7.53 Total: -30.92 kcal Atomic # 7 Polarization: -127.03 SS G_CDS: -6.91 Total: -133.94 kcal Atomic # 8 Polarization: -135.53 SS G_CDS: -4.41 Total: -139.94 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 16 Polarization: 147.89 SS G_CDS: -0.28 Total: 147.62 kcal Total: -87.26 -0.89 -88.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192965225.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -87.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds