Wall clock time and date at job start Tue Mar 31 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21367 * 120.00284 * 2 1 4 4 C 1.46337 * 120.00074 * 179.97438 * 2 1 3 5 5 C 1.40309 * 120.18374 * 0.02562 * 4 2 1 6 6 C 1.37695 * 119.98531 * 180.02562 * 5 4 2 7 7 C 1.39931 * 120.19487 * 359.97438 * 6 5 4 8 8 C 1.38534 * 120.23192 * 359.97206 * 7 6 5 9 9 C 1.38659 * 120.20258 * 0.06517 * 8 7 6 10 10 N 1.38891 * 120.12403 * 179.97438 * 9 8 7 11 11 S 1.65600 * 120.00405 * 324.56685 * 10 9 8 12 12 O 1.42097 * 106.40099 * 181.43539 * 11 10 9 13 13 O 1.42097 * 106.39996 * 314.35621 * 11 10 9 14 14 C 1.76200 * 107.21732 * 67.89709 * 11 10 9 15 15 H 1.07997 * 120.00107 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99916 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00238 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46968 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47241 * 119.99594 * 18 16 14 21 21 H 1.48506 * 109.46715 * 239.99702 * 18 16 14 22 22 O 1.36337 * 108.52781 * 179.97438 * 7 6 5 23 23 C 1.43937 * 105.57853 * 342.61365 * 22 7 6 24 24 O 1.36661 * 131.30712 * 179.97438 * 6 5 4 25 25 H 1.08995 * 109.47751 * 270.00029 * 1 2 3 26 26 H 1.09006 * 109.47059 * 30.00515 * 1 2 3 27 27 H 1.09002 * 109.47058 * 149.99919 * 1 2 3 28 28 H 1.08004 * 120.00815 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.90405 * 179.97438 * 8 7 6 30 30 H 0.97006 * 119.99927 * 144.56436 * 10 9 8 31 31 H 0.96993 * 120.00005 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.55560 * 145.93607 * 23 22 7 33 33 H 1.09000 * 110.55818 * 268.76253 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0510 0.0000 4 6 2.2387 -1.2673 0.0006 5 6 1.5410 -2.4847 0.0006 6 6 2.2336 -3.6747 0.0016 7 6 3.6330 -3.6746 0.0022 8 6 4.3304 -2.4777 0.0011 9 6 3.6461 -1.2717 0.0008 10 7 4.3470 -0.0726 0.0002 11 16 5.7738 0.0530 0.8313 12 8 6.2185 1.3923 0.6649 13 8 5.5507 -0.5395 2.1034 14 6 6.9495 -0.9677 0.0063 15 1 6.6597 -1.5223 -0.8739 16 6 8.2396 -1.0583 0.4844 17 7 8.5927 -0.3825 1.5560 18 14 9.4862 -2.1399 -0.3906 19 1 8.8432 -2.7887 -1.5614 20 1 10.6273 -1.3080 -0.8500 21 1 9.9789 -3.1832 0.5443 22 8 4.0663 -4.9673 0.0038 23 6 2.9345 -5.7539 0.4185 24 8 1.8002 -4.9708 0.0023 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.4610 -2.4883 0.0006 29 1 5.4104 -2.4838 0.0019 30 1 4.0007 0.6914 -0.4871 31 1 9.5003 -0.4459 1.8921 32 1 2.9361 -6.7214 -0.0836 33 1 2.9343 -5.8834 1.5008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192980668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:17 Heat of formation + Delta-G solvation = -151.391247 kcal Electronic energy + Delta-G solvation = -24359.652647 eV Core-core repulsion = 20478.735735 eV Total energy + Delta-G solvation = -3880.916912 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.08560 -39.78330 -37.45180 -36.25674 -35.38062 -34.22526 -34.12307 -33.23899 -31.51763 -29.24741 -28.42895 -26.38715 -25.82510 -23.68091 -22.54328 -20.44044 -19.10427 -18.49333 -17.93418 -17.59398 -17.32971 -16.41958 -16.03236 -15.43768 -15.29494 -14.90405 -14.82229 -14.62719 -14.24165 -14.07489 -13.76118 -13.51693 -13.42913 -12.92171 -12.80765 -12.24497 -12.16164 -12.12874 -11.81368 -11.48434 -11.30476 -10.99846 -10.71074 -10.61890 -10.45489 -10.36627 -9.97296 -9.51037 -9.35206 -8.94223 -8.56482 -7.66336 -6.83085 -5.48625 0.65397 1.35233 2.01761 2.39742 2.81384 3.00523 3.09267 3.16551 3.41734 3.71552 3.96464 4.16543 4.41720 4.46815 4.55391 4.67737 4.88091 4.96674 5.04778 5.19485 5.35774 5.39212 5.54152 5.54557 5.71264 5.84585 6.03740 6.09181 6.14372 6.34177 6.49728 6.73752 7.14157 7.20681 7.54277 7.77499 7.80631 8.73799 10.11172 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.006688 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.060594 B = 4185.758980 C = 5973.714088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.403 3.597 3 O -0.460 6.460 4 C -0.222 4.222 5 C -0.029 4.029 6 C -0.023 4.023 7 C 0.111 3.889 8 C -0.177 4.177 9 C 0.284 3.716 10 N -1.050 6.050 11 S 2.695 3.305 12 O -0.989 6.989 13 O -0.987 6.987 14 C -1.025 5.025 15 H 0.112 0.888 16 C 0.135 3.865 17 N -0.838 5.838 18 Si 0.922 3.078 19 H -0.259 1.259 20 H -0.269 1.269 21 H -0.269 1.269 22 O -0.301 6.301 23 C 0.211 3.789 24 O -0.310 6.310 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.145 0.855 29 H 0.181 0.819 30 H 0.427 0.573 31 H 0.293 0.707 32 H 0.131 0.869 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 -8.738 -4.088 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.283 3.717 3 O -0.337 6.337 4 C -0.228 4.228 5 C -0.048 4.048 6 C -0.067 4.067 7 C 0.064 3.936 8 C -0.198 4.198 9 C 0.180 3.820 10 N -0.794 5.794 11 S 2.795 3.205 12 O -0.979 6.979 13 O -0.977 6.977 14 C -1.158 5.158 15 H 0.130 0.870 16 C -0.084 4.084 17 N -0.467 5.467 18 Si 0.745 3.255 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.194 1.194 22 O -0.216 6.216 23 C 0.100 3.900 24 O -0.227 6.227 25 H 0.115 0.885 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.163 0.837 29 H 0.198 0.802 30 H 0.268 0.732 31 H 0.104 0.896 32 H 0.148 0.852 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.310 -7.796 -3.176 15.749 hybrid contribution 0.721 -1.019 -0.941 1.563 sum -12.589 -8.815 -4.118 15.910 Atomic orbital electron populations 1.22207 0.93694 1.04723 1.04762 1.21967 0.91511 0.87013 0.71212 1.90469 1.71589 1.34108 1.37525 1.19937 0.92418 0.94546 1.15947 1.19926 0.99833 0.86968 0.98099 1.19448 0.91320 0.85743 1.10234 1.19660 0.91012 0.85387 0.97497 1.20748 1.04207 0.87165 1.07704 1.16988 0.89587 0.85659 0.89723 1.54453 1.42133 1.16899 1.65946 1.01345 0.71120 0.74563 0.73456 1.93406 1.79031 1.38831 1.86631 1.93411 1.84873 1.79115 1.40342 1.30585 1.10984 1.46548 1.27672 0.87025 1.24757 0.97940 0.92927 0.92812 1.69894 1.21884 1.35488 1.19430 0.86090 0.79574 0.79721 0.80075 1.18298 1.19408 1.19388 1.87362 1.36002 1.14439 1.83763 1.25639 0.70941 0.93213 1.00255 1.87352 1.35541 1.14256 1.85552 0.88467 0.89428 0.89576 0.83735 0.80197 0.73186 0.89603 0.85198 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.77 9.75 36.00 0.35 -1.42 16 2 C 0.40 5.85 7.20 -31.06 -0.22 5.63 16 3 O -0.46 -8.30 14.65 5.48 0.08 -8.22 16 4 C -0.22 -3.52 5.89 -104.91 -0.62 -4.14 16 5 C -0.03 -0.38 9.36 -39.00 -0.36 -0.74 16 6 C -0.02 -0.34 7.12 -39.15 -0.28 -0.61 16 7 C 0.11 1.90 7.15 -38.84 -0.28 1.62 16 8 C -0.18 -3.48 9.03 -39.32 -0.36 -3.84 16 9 C 0.28 5.56 6.16 -83.56 -0.51 5.05 16 10 N -1.05 -22.82 5.05 32.57 0.16 -22.66 16 11 S 2.69 72.48 4.65 -107.50 -0.50 71.98 16 12 O -0.99 -29.37 18.02 -57.17 -1.03 -30.40 16 13 O -0.99 -28.83 17.49 -57.17 -1.00 -29.83 16 14 C -1.02 -27.27 7.64 30.60 0.23 -27.04 16 15 H 0.11 2.68 6.76 -52.49 -0.35 2.32 16 16 C 0.13 3.65 5.46 -17.82 -0.10 3.55 16 17 N -0.84 -24.03 13.19 55.43 0.73 -23.30 16 18 Si 0.92 19.99 29.54 -169.99 -5.02 14.96 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 22 O -0.30 -4.65 11.39 -45.15 -0.51 -5.17 16 23 C 0.21 2.29 8.88 101.05 0.90 3.19 16 24 O -0.31 -4.00 11.41 -46.21 -0.53 -4.53 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.56 6.45 -51.93 -0.33 0.23 16 28 H 0.15 1.30 6.34 -52.48 -0.33 0.97 16 29 H 0.18 3.88 4.38 -52.48 -0.23 3.65 16 30 H 0.43 8.65 6.56 -34.47 -0.23 8.42 16 31 H 0.29 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 301.72 15.07 4.55 4.55 Total: -1.00 -35.99 301.72 -6.62 -42.62 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -2.30 Total: 8.75 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.25 Total: -18.75 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.90 Total: -45.96 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -2.99 Total: -78.15 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 72.48 SS G_CDS: -0.50 Total: 71.98 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.99 -6.62 -42.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.776 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds