Wall clock time and date at job start Tue Mar 31 2020 04:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21367 * 120.00284 * 2 1 4 4 C 1.46337 * 120.00074 * 179.97438 * 2 1 3 5 5 C 1.40309 * 120.18374 * 0.02562 * 4 2 1 6 6 C 1.37695 * 119.98531 * 180.02562 * 5 4 2 7 7 C 1.39931 * 120.19487 * 359.97438 * 6 5 4 8 8 C 1.38534 * 120.23192 * 359.97206 * 7 6 5 9 9 C 1.38659 * 120.20258 * 0.06517 * 8 7 6 10 10 N 1.38891 * 120.12403 * 179.97438 * 9 8 7 11 11 S 1.65600 * 120.00405 * 324.56685 * 10 9 8 12 12 O 1.42097 * 106.40099 * 181.43539 * 11 10 9 13 13 O 1.42097 * 106.39996 * 314.35621 * 11 10 9 14 14 C 1.76200 * 107.21732 * 67.89709 * 11 10 9 15 15 H 1.07997 * 120.00107 * 0.02562 * 14 11 10 16 16 C 1.37877 * 120.00139 * 180.02562 * 14 11 10 17 17 N 1.31520 * 119.99916 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00238 * 180.02562 * 16 14 11 19 19 H 1.48500 * 109.46968 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47241 * 119.99594 * 18 16 14 21 21 H 1.48506 * 109.46715 * 239.99702 * 18 16 14 22 22 O 1.36337 * 108.52781 * 179.97438 * 7 6 5 23 23 C 1.43937 * 105.57853 * 342.61365 * 22 7 6 24 24 O 1.36661 * 131.30712 * 179.97438 * 6 5 4 25 25 H 1.08995 * 109.47751 * 270.00029 * 1 2 3 26 26 H 1.09006 * 109.47059 * 30.00515 * 1 2 3 27 27 H 1.09002 * 109.47058 * 149.99919 * 1 2 3 28 28 H 1.08004 * 120.00815 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.90405 * 179.97438 * 8 7 6 30 30 H 0.97006 * 119.99927 * 144.56436 * 10 9 8 31 31 H 0.96993 * 120.00005 * 180.02562 * 17 16 14 32 32 H 1.09004 * 110.55560 * 145.93607 * 23 22 7 33 33 H 1.09000 * 110.55818 * 268.76253 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1138 1.0510 0.0000 4 6 2.2387 -1.2673 0.0006 5 6 1.5410 -2.4847 0.0006 6 6 2.2336 -3.6747 0.0016 7 6 3.6330 -3.6746 0.0022 8 6 4.3304 -2.4777 0.0011 9 6 3.6461 -1.2717 0.0008 10 7 4.3470 -0.0726 0.0002 11 16 5.7738 0.0530 0.8313 12 8 6.2185 1.3923 0.6649 13 8 5.5507 -0.5395 2.1034 14 6 6.9495 -0.9677 0.0063 15 1 6.6597 -1.5223 -0.8739 16 6 8.2396 -1.0583 0.4844 17 7 8.5927 -0.3825 1.5560 18 14 9.4862 -2.1399 -0.3906 19 1 8.8432 -2.7887 -1.5614 20 1 10.6273 -1.3080 -0.8500 21 1 9.9789 -3.1832 0.5443 22 8 4.0663 -4.9673 0.0038 23 6 2.9345 -5.7539 0.4185 24 8 1.8002 -4.9708 0.0023 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.4610 -2.4883 0.0006 29 1 5.4104 -2.4838 0.0019 30 1 4.0007 0.6914 -0.4871 31 1 9.5003 -0.4459 1.8921 32 1 2.9361 -6.7214 -0.0836 33 1 2.9343 -5.8834 1.5008 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192980668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:17 Heat of formation + Delta-G solvation = -181.434067 kcal Electronic energy + Delta-G solvation = -24360.955402 eV Core-core repulsion = 20478.735735 eV Total energy + Delta-G solvation = -3882.219667 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.20698 -41.01640 -38.77045 -37.58002 -37.34967 -36.37281 -35.68211 -35.26439 -32.69735 -30.33168 -29.61661 -28.45267 -26.79462 -24.90575 -23.85453 -21.72489 -20.90751 -20.00736 -19.62794 -18.82547 -18.59533 -18.10192 -17.44277 -17.09003 -16.63132 -16.28578 -16.08128 -15.94867 -15.78721 -15.73616 -15.14447 -14.93392 -14.72418 -14.13876 -14.03526 -13.95472 -13.53258 -13.10710 -13.01698 -12.95586 -12.91871 -12.76594 -12.69287 -12.62614 -12.33972 -12.21129 -11.32371 -11.29067 -10.97404 -10.69521 -9.91383 -8.97832 -8.83417 -7.61383 -0.59643 -0.05336 0.15995 1.21968 1.30122 1.31166 1.49725 1.69607 2.14235 2.34203 2.47984 2.48655 2.71924 3.12178 3.30994 3.49818 3.76222 3.81102 3.99327 4.09084 4.15319 4.23247 4.33867 4.40913 4.63248 4.75589 4.83331 4.86911 5.01107 5.04407 5.11414 5.20689 5.37485 5.75578 5.97549 6.06644 6.57277 6.65420 8.12075 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.006688 C = 0.004686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.060594 B = 4185.758980 C = 5973.714088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.399 3.601 3 O -0.505 6.505 4 C -0.220 4.220 5 C -0.004 4.004 6 C -0.011 4.011 7 C 0.100 3.900 8 C -0.208 4.208 9 C 0.242 3.758 10 N -1.045 6.045 11 S 2.700 3.300 12 O -1.031 7.031 13 O -1.024 7.024 14 C -1.033 5.033 15 H 0.129 0.871 16 C 0.074 3.926 17 N -0.888 5.888 18 Si 0.993 3.007 19 H -0.247 1.247 20 H -0.256 1.256 21 H -0.255 1.255 22 O -0.320 6.320 23 C 0.201 3.799 24 O -0.304 6.304 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.121 0.879 28 H 0.201 0.799 29 H 0.152 0.848 30 H 0.431 0.569 31 H 0.303 0.697 32 H 0.173 0.827 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.658 -11.477 -5.222 20.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.282 3.718 3 O -0.384 6.384 4 C -0.226 4.226 5 C -0.023 4.023 6 C -0.056 4.056 7 C 0.053 3.947 8 C -0.230 4.230 9 C 0.140 3.860 10 N -0.794 5.794 11 S 2.803 3.197 12 O -1.022 7.022 13 O -1.014 7.014 14 C -1.167 5.167 15 H 0.147 0.853 16 C -0.140 4.140 17 N -0.519 5.519 18 Si 0.810 3.190 19 H -0.169 1.169 20 H -0.180 1.180 21 H -0.179 1.179 22 O -0.236 6.236 23 C 0.091 3.909 24 O -0.220 6.220 25 H 0.137 0.863 26 H 0.115 0.885 27 H 0.139 0.861 28 H 0.218 0.782 29 H 0.169 0.831 30 H 0.273 0.727 31 H 0.113 0.887 32 H 0.190 0.810 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.037 -10.555 -4.299 19.674 hybrid contribution 1.383 -0.315 -0.583 1.534 sum -14.654 -10.870 -4.882 18.887 Atomic orbital electron populations 1.22270 0.88368 1.06999 1.06681 1.22844 0.94171 0.85518 0.69289 1.90462 1.73031 1.35378 1.39579 1.20348 0.90862 0.96841 1.14518 1.20396 1.02132 0.84937 0.94837 1.19625 0.90144 0.87110 1.08748 1.19710 0.92299 0.85340 0.97345 1.20550 1.03165 0.88799 1.10452 1.17337 0.91386 0.84406 0.92835 1.53699 1.41062 1.18331 1.66322 1.00775 0.71888 0.73704 0.73369 1.93334 1.80572 1.40970 1.87279 1.93342 1.85775 1.79371 1.42862 1.30810 1.11279 1.46455 1.28169 0.85337 1.26041 1.00263 0.94254 0.93430 1.69983 1.23112 1.37445 1.21313 0.85067 0.76749 0.77944 0.79264 1.16942 1.18015 1.17920 1.87338 1.38349 1.14001 1.83894 1.26281 0.68847 0.93604 1.02218 1.87360 1.36045 1.13134 1.85473 0.86313 0.88476 0.86062 0.78241 0.83088 0.72712 0.88685 0.80984 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 9.75 71.23 0.69 -1.82 16 2 C 0.40 10.91 7.20 27.79 0.20 11.11 16 3 O -0.50 -18.43 14.65 -3.30 -0.05 -18.48 16 4 C -0.22 -6.64 5.89 -20.05 -0.12 -6.76 16 5 C 0.00 -0.09 9.36 22.65 0.21 0.12 16 6 C -0.01 -0.29 7.12 22.55 0.16 -0.13 16 7 C 0.10 3.35 7.15 22.75 0.16 3.52 16 8 C -0.21 -8.49 9.03 22.44 0.20 -8.29 16 9 C 0.24 9.73 6.16 38.74 0.24 9.97 16 10 N -1.04 -48.10 5.05 -50.86 -0.26 -48.36 16 11 S 2.70 154.37 4.65 -56.49 -0.26 154.10 16 12 O -1.03 -65.26 18.02 -128.00 -2.31 -67.57 16 13 O -1.02 -63.59 17.49 -128.00 -2.24 -65.83 16 14 C -1.03 -57.47 7.64 67.73 0.52 -56.95 16 15 H 0.13 6.46 6.76 -2.91 -0.02 6.44 16 16 C 0.07 4.12 5.46 84.65 0.46 4.59 16 17 N -0.89 -52.98 13.19 21.45 0.28 -52.70 16 18 Si 0.99 41.18 29.54 68.60 2.03 43.21 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 O -0.32 -9.49 11.39 -74.16 -0.84 -10.34 16 23 C 0.20 3.67 8.88 113.37 1.01 4.67 16 24 O -0.30 -6.56 11.41 -77.96 -0.89 -7.45 16 25 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.12 0.78 6.45 -2.39 -0.02 0.77 16 28 H 0.20 2.19 6.34 -2.91 -0.02 2.17 16 29 H 0.15 6.95 4.38 -2.91 -0.01 6.94 16 30 H 0.43 18.64 6.56 -96.74 -0.63 18.01 16 31 H 0.30 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.17 1.65 8.14 -2.38 -0.02 1.63 16 33 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -85.45 301.72 -0.23 -85.68 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 0.57 Total: 27.71 kcal Atomic # 6 Polarization: -43.72 SS G_CDS: 3.74 Total: -39.98 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: 0.03 Total: -101.06 kcal Atomic # 8 Polarization: -163.34 SS G_CDS: -6.33 Total: -169.66 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Atomic # 16 Polarization: 154.37 SS G_CDS: -0.26 Total: 154.10 kcal Total: -85.45 -0.23 -85.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192980668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.755 kcal (2) G-P(sol) polarization free energy of solvation -85.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds