Wall clock time and date at job start Tue Mar 31 2020 04:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48496 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00036 * 3 2 1 6 6 H 1.48507 * 109.47256 * 59.99880 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99260 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40345 * 66.46537 * 9 7 2 11 11 O 1.42097 * 106.40526 * 293.53984 * 9 7 2 12 12 N 1.65608 * 107.21632 * 179.97438 * 9 7 2 13 13 C 1.46497 * 119.99652 * 65.00196 * 12 9 7 14 14 H 1.09001 * 109.52486 * 334.99453 * 13 12 9 15 15 C 1.53090 * 109.52396 * 95.12593 * 13 12 9 16 16 H 1.08999 * 109.48022 * 57.53261 * 15 13 12 17 17 O 1.42900 * 109.48201 * 297.49484 * 15 13 12 18 18 O 1.42908 * 109.41417 * 177.44269 * 15 13 12 19 19 C 1.42905 * 114.15651 * 298.94358 * 18 15 13 20 20 H 1.08995 * 109.47727 * 301.13857 * 19 18 15 21 21 C 1.52996 * 109.48133 * 181.10430 * 19 18 15 22 22 O 1.42898 * 109.47015 * 65.05647 * 21 19 18 23 23 C 1.53099 * 109.41482 * 61.12074 * 19 18 15 24 24 H 1.09004 * 109.52056 * 62.29893 * 23 19 18 25 25 O 1.42894 * 109.57301 * 182.45331 * 23 19 18 26 26 C 1.53176 * 109.16079 * 302.39413 * 23 19 18 27 27 H 1.08998 * 109.54638 * 297.11228 * 26 23 19 28 28 O 1.42899 * 109.53851 * 176.84645 * 26 23 19 29 29 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00222 * 245.00273 * 12 9 7 31 31 H 0.96700 * 114.00139 * 179.97438 * 17 15 13 32 32 H 1.09004 * 109.46963 * 185.05809 * 21 19 18 33 33 H 1.09000 * 109.47551 * 305.05449 * 21 19 18 34 34 H 0.96708 * 114.00198 * 179.97438 * 22 21 19 35 35 H 0.96701 * 114.00489 * 299.72206 * 25 23 19 36 36 H 0.96703 * 114.00354 * 60.44743 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9354 -0.0019 13 6 3.1403 -4.1093 1.1472 14 1 3.2478 -3.1599 1.6718 15 6 2.5521 -5.1554 2.0976 16 1 2.4062 -6.0928 1.5611 17 8 1.2963 -4.6920 2.5981 18 8 3.4522 -5.3666 3.1873 19 6 4.7371 -5.8563 2.7979 20 1 4.6206 -6.8027 2.2699 21 6 5.6007 -6.0693 4.0428 22 8 5.0307 -7.1042 4.8465 23 6 5.4123 -4.8371 1.8764 24 1 5.5658 -3.9030 2.4168 25 8 6.6729 -5.3485 1.4392 26 6 4.5134 -4.5844 0.6621 27 1 4.4000 -5.5075 0.0938 28 8 5.1013 -3.5798 -0.1669 29 1 -0.4850 0.8400 -0.0004 30 1 2.3167 -4.5321 -0.7636 31 1 0.8651 -5.3063 3.2079 32 1 6.6080 -6.3565 3.7413 33 1 5.6434 -5.1444 4.6180 34 1 5.5275 -7.2936 5.6544 35 1 7.2936 -5.5320 2.1577 36 1 5.9744 -3.8145 -0.5101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:37 Heat of formation + Delta-G solvation = -319.674719 kcal Electronic energy + Delta-G solvation = -26313.577746 eV Core-core repulsion = 22118.054595 eV Total energy + Delta-G solvation = -4195.523151 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.085 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42923 -37.47468 -37.27514 -36.09187 -35.27204 -34.91231 -33.89479 -33.69787 -32.91078 -30.71027 -29.25805 -25.97503 -25.92627 -23.43010 -22.07985 -20.85044 -18.89389 -18.48281 -17.75702 -17.46611 -17.41112 -17.20424 -16.66400 -15.99840 -15.79857 -15.18816 -14.88387 -14.65891 -14.34229 -13.99614 -13.91116 -13.78481 -13.22190 -13.05989 -12.83734 -12.53389 -11.92879 -11.90106 -11.59487 -11.25466 -11.13432 -11.08871 -10.95156 -10.48464 -10.44612 -10.23038 -10.14720 -10.04207 -9.94010 -9.86164 -9.68984 -9.12409 -8.89414 -8.40307 -6.56101 -5.14704 2.46104 3.14193 3.19976 3.24650 3.31998 3.59975 3.75086 3.83549 4.18492 4.32148 4.63248 4.68389 4.76429 4.78847 4.85170 4.92056 4.98796 5.06956 5.17510 5.22111 5.37013 5.53087 5.59385 5.97327 6.05059 6.53021 6.90189 6.98569 7.18381 7.28015 7.47193 7.70013 7.94176 7.96711 8.17661 9.04835 10.37921 Molecular weight = 313.08amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.005118 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.262486 B = 5470.060281 C = 5966.745813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.133 3.867 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -1.018 5.018 8 H 0.104 0.896 9 S 2.712 3.288 10 O -1.012 7.012 11 O -0.975 6.975 12 N -1.114 6.114 13 C 0.154 3.846 14 H 0.113 0.887 15 C 0.251 3.749 16 H 0.053 0.947 17 O -0.488 6.488 18 O -0.391 6.391 19 C 0.072 3.928 20 H 0.076 0.924 21 C 0.082 3.918 22 O -0.561 6.561 23 C 0.044 3.956 24 H 0.084 0.916 25 O -0.557 6.557 26 C 0.116 3.884 27 H 0.069 0.931 28 O -0.536 6.536 29 H 0.288 0.712 30 H 0.401 0.599 31 H 0.376 0.624 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.381 0.619 35 H 0.380 0.620 36 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.912 -12.817 7.249 20.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.198 1.198 6 H -0.198 1.198 7 C -1.151 5.151 8 H 0.123 0.877 9 S 2.811 3.189 10 O -1.002 7.002 11 O -0.965 6.965 12 N -0.866 5.866 13 C 0.043 3.957 14 H 0.130 0.870 15 C 0.152 3.848 16 H 0.070 0.930 17 O -0.291 6.291 18 O -0.312 6.312 19 C 0.013 3.987 20 H 0.094 0.906 21 C 0.004 3.996 22 O -0.366 6.366 23 C -0.017 4.017 24 H 0.102 0.898 25 O -0.364 6.364 26 C 0.054 3.946 27 H 0.087 0.913 28 O -0.341 6.341 29 H 0.098 0.902 30 H 0.231 0.769 31 H 0.223 0.777 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.228 0.772 35 H 0.229 0.771 36 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 12.554 -11.815 6.297 18.353 hybrid contribution 2.276 0.073 0.655 2.370 sum 14.830 -11.741 6.951 20.153 Atomic orbital electron populations 1.69917 1.06735 1.30331 1.40860 1.24725 0.94384 1.00682 0.88594 0.86182 0.80603 0.80667 0.78354 1.18629 1.19768 1.19757 1.30672 1.06401 1.11960 1.66052 0.87739 1.00662 0.72034 0.73141 0.73072 1.93366 1.72904 1.87687 1.46282 1.93435 1.71756 1.86735 1.44556 1.56012 1.54521 1.51329 1.24699 1.20823 0.86580 1.00918 0.87341 0.86953 1.23280 0.81386 0.94905 0.85255 0.93008 1.87225 1.28439 1.47984 1.65469 1.87944 1.22853 1.85743 1.34632 1.22612 0.84227 0.97001 0.94891 0.90623 1.22151 0.94310 0.91481 0.91679 1.86558 1.55302 1.56574 1.38208 1.23377 0.84930 0.96898 0.96488 0.89815 1.86467 1.24905 1.87162 1.37860 1.21931 0.91098 0.92009 0.89532 0.91346 1.86669 1.37134 1.42901 1.67367 0.90184 0.76918 0.77698 0.92153 0.92103 0.77237 0.77120 0.77142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.86 13.19 55.43 0.73 -25.13 16 2 C 0.13 3.88 5.46 -17.82 -0.10 3.78 16 3 Si 0.92 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 5 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -1.02 -29.42 9.58 30.60 0.29 -29.13 16 8 H 0.10 2.86 7.81 -52.49 -0.41 2.45 16 9 S 2.71 74.67 4.93 -107.50 -0.53 74.14 16 10 O -1.01 -30.85 18.02 -57.17 -1.03 -31.88 16 11 O -0.98 -28.90 15.18 -66.33 -1.01 -29.91 16 12 N -1.11 -23.12 5.33 -4.77 -0.03 -23.15 16 13 C 0.15 2.81 2.29 -67.79 -0.16 2.65 16 14 H 0.11 2.33 7.85 -51.93 -0.41 1.93 16 15 C 0.25 4.17 3.74 37.20 0.14 4.31 16 16 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 17 O -0.49 -9.39 10.84 -67.00 -0.73 -10.12 16 18 O -0.39 -5.88 10.26 -62.37 -0.64 -6.53 16 19 C 0.07 0.81 2.65 -26.68 -0.07 0.74 16 20 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 21 C 0.08 0.67 6.57 37.16 0.24 0.92 16 22 O -0.56 -5.23 13.63 -40.01 -0.55 -5.78 16 23 C 0.04 0.49 2.81 -26.59 -0.07 0.42 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 O -0.56 -4.83 12.92 -41.55 -0.54 -5.37 16 26 C 0.12 1.64 2.82 -26.55 -0.07 1.57 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 O -0.54 -8.18 13.25 -41.55 -0.55 -8.73 16 29 H 0.29 7.88 8.31 -40.82 -0.34 7.54 16 30 H 0.40 7.19 8.84 -34.48 -0.30 6.89 16 31 H 0.38 5.33 9.12 45.56 0.42 5.75 16 32 H 0.06 0.28 6.62 -51.93 -0.34 -0.06 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.38 1.59 9.12 45.56 0.42 2.00 16 35 H 0.38 1.67 7.38 45.56 0.34 2.01 16 36 H 0.38 4.18 8.72 45.56 0.40 4.58 16 LS Contribution 318.82 15.07 4.80 4.80 Total: -1.00 -42.01 318.82 -6.02 -48.03 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -1.15 Total: 17.80 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 0.20 Total: -14.74 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: 0.71 Total: -48.28 kcal Atomic # 8 Polarization: -93.27 SS G_CDS: -5.04 Total: -98.30 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 74.67 SS G_CDS: -0.53 Total: 74.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -42.01 -6.02 -48.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.641 kcal (2) G-P(sol) polarization free energy of solvation -42.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -313.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -319.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds