Wall clock time and date at job start Tue Mar 31 2020 04:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99890 * 2 1 4 4 H 1.48496 * 109.47359 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47176 * 300.00036 * 3 2 1 6 6 H 1.48507 * 109.47256 * 59.99880 * 3 2 1 7 7 C 1.37878 * 120.00033 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99260 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40345 * 66.46537 * 9 7 2 11 11 O 1.42097 * 106.40526 * 293.53984 * 9 7 2 12 12 N 1.65608 * 107.21632 * 179.97438 * 9 7 2 13 13 C 1.46497 * 119.99652 * 65.00196 * 12 9 7 14 14 H 1.09001 * 109.52486 * 334.99453 * 13 12 9 15 15 C 1.53090 * 109.52396 * 95.12593 * 13 12 9 16 16 H 1.08999 * 109.48022 * 57.53261 * 15 13 12 17 17 O 1.42900 * 109.48201 * 297.49484 * 15 13 12 18 18 O 1.42908 * 109.41417 * 177.44269 * 15 13 12 19 19 C 1.42905 * 114.15651 * 298.94358 * 18 15 13 20 20 H 1.08995 * 109.47727 * 301.13857 * 19 18 15 21 21 C 1.52996 * 109.48133 * 181.10430 * 19 18 15 22 22 O 1.42898 * 109.47015 * 65.05647 * 21 19 18 23 23 C 1.53099 * 109.41482 * 61.12074 * 19 18 15 24 24 H 1.09004 * 109.52056 * 62.29893 * 23 19 18 25 25 O 1.42894 * 109.57301 * 182.45331 * 23 19 18 26 26 C 1.53176 * 109.16079 * 302.39413 * 23 19 18 27 27 H 1.08998 * 109.54638 * 297.11228 * 26 23 19 28 28 O 1.42899 * 109.53851 * 176.84645 * 26 23 19 29 29 H 0.96997 * 119.99891 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00222 * 245.00273 * 12 9 7 31 31 H 0.96700 * 114.00139 * 179.97438 * 17 15 13 32 32 H 1.09004 * 109.46963 * 185.05809 * 21 19 18 33 33 H 1.09000 * 109.47551 * 305.05449 * 21 19 18 34 34 H 0.96708 * 114.00198 * 179.97438 * 22 21 19 35 35 H 0.96701 * 114.00489 * 299.72206 * 25 23 19 36 36 H 0.96703 * 114.00354 * 60.44743 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 16 1.1236 -2.7199 -0.0005 10 8 0.4510 -2.7950 -1.2501 11 8 0.4519 -2.7955 1.2494 12 7 2.2484 -3.9354 -0.0019 13 6 3.1403 -4.1093 1.1472 14 1 3.2478 -3.1599 1.6718 15 6 2.5521 -5.1554 2.0976 16 1 2.4062 -6.0928 1.5611 17 8 1.2963 -4.6920 2.5981 18 8 3.4522 -5.3666 3.1873 19 6 4.7371 -5.8563 2.7979 20 1 4.6206 -6.8027 2.2699 21 6 5.6007 -6.0693 4.0428 22 8 5.0307 -7.1042 4.8465 23 6 5.4123 -4.8371 1.8764 24 1 5.5658 -3.9030 2.4168 25 8 6.6729 -5.3485 1.4392 26 6 4.5134 -4.5844 0.6621 27 1 4.4000 -5.5075 0.0938 28 8 5.1013 -3.5798 -0.1669 29 1 -0.4850 0.8400 -0.0004 30 1 2.3167 -4.5321 -0.7636 31 1 0.8651 -5.3063 3.2079 32 1 6.6080 -6.3565 3.7413 33 1 5.6434 -5.1444 4.6180 34 1 5.5275 -7.2936 5.6544 35 1 7.2936 -5.5320 2.1577 36 1 5.9744 -3.8145 -0.5101 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192995148.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:36 Heat of formation + Delta-G solvation = -366.226072 kcal Electronic energy + Delta-G solvation = -26315.596364 eV Core-core repulsion = 22118.054595 eV Total energy + Delta-G solvation = -4197.541769 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.085 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48783 -38.50353 -38.19688 -37.23745 -36.94432 -36.39746 -35.96893 -35.43508 -35.07081 -31.63812 -30.46938 -28.21433 -27.00617 -24.53752 -23.04285 -22.04025 -20.93451 -19.40512 -19.32785 -18.84746 -18.56507 -18.16211 -18.09679 -17.77355 -17.07383 -16.85906 -16.04650 -15.93410 -15.76105 -15.47162 -15.17789 -15.07894 -14.76280 -14.15126 -14.07741 -13.93173 -13.51735 -13.27510 -13.03382 -13.01112 -12.85953 -12.47487 -12.35943 -12.27726 -12.26521 -12.15158 -11.74977 -11.25854 -11.23650 -11.06367 -11.03457 -10.92094 -10.73578 -10.16730 -8.72114 -7.42395 0.41773 1.31902 1.32147 1.50737 2.16346 2.24851 2.60526 2.63002 2.83333 2.93896 3.11314 3.46366 3.64471 3.76588 3.79909 3.88435 3.94292 3.99943 4.11541 4.21972 4.37435 4.40460 4.50817 4.58631 4.66069 4.80822 5.04339 5.32429 5.94578 5.98720 6.31700 6.62737 6.79187 6.82273 6.83418 6.90829 8.24518 Molecular weight = 313.08amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.005118 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.262486 B = 5470.060281 C = 5966.745813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.257 1.257 7 C -1.040 5.040 8 H 0.112 0.888 9 S 2.722 3.278 10 O -1.051 7.051 11 O -1.005 7.005 12 N -1.101 6.101 13 C 0.143 3.857 14 H 0.079 0.921 15 C 0.254 3.746 16 H 0.078 0.922 17 O -0.527 6.527 18 O -0.404 6.404 19 C 0.060 3.940 20 H 0.083 0.917 21 C 0.083 3.917 22 O -0.587 6.587 23 C 0.062 3.938 24 H 0.077 0.923 25 O -0.553 6.553 26 C 0.117 3.883 27 H 0.090 0.910 28 O -0.560 6.560 29 H 0.298 0.702 30 H 0.414 0.586 31 H 0.392 0.608 32 H 0.105 0.895 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.402 0.598 36 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.869 -13.348 7.717 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.181 1.181 6 H -0.181 1.181 7 C -1.173 5.173 8 H 0.130 0.870 9 S 2.822 3.178 10 O -1.041 7.041 11 O -0.995 6.995 12 N -0.858 5.858 13 C 0.034 3.966 14 H 0.097 0.903 15 C 0.155 3.845 16 H 0.095 0.905 17 O -0.334 6.334 18 O -0.325 6.325 19 C 0.002 3.998 20 H 0.101 0.899 21 C 0.005 3.995 22 O -0.396 6.396 23 C 0.001 3.999 24 H 0.095 0.905 25 O -0.363 6.363 26 C 0.055 3.945 27 H 0.107 0.893 28 O -0.369 6.369 29 H 0.108 0.892 30 H 0.248 0.752 31 H 0.242 0.758 32 H 0.123 0.877 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.255 0.745 36 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 15.551 -12.397 6.792 21.015 hybrid contribution 1.452 0.110 0.552 1.557 sum 17.003 -12.287 7.344 22.226 Atomic orbital electron populations 1.69997 1.08633 1.32063 1.41903 1.25982 0.95374 1.05236 0.87642 0.85147 0.79397 0.75367 0.79487 1.17468 1.18140 1.18147 1.30996 1.06939 1.13182 1.66216 0.86996 0.99979 0.72433 0.73644 0.71788 1.93301 1.74708 1.88468 1.47652 1.93390 1.73273 1.87397 1.45414 1.55263 1.54193 1.50025 1.26322 1.21094 0.88630 1.00398 0.86497 0.90304 1.23200 0.80859 0.94999 0.85484 0.90471 1.87158 1.30152 1.49739 1.66322 1.87940 1.24383 1.86044 1.34099 1.22993 0.82962 0.96934 0.96877 0.89933 1.22249 0.95267 0.91561 0.90413 1.86491 1.56727 1.56758 1.39628 1.22919 0.85590 0.96833 0.94580 0.90499 1.86434 1.24049 1.86851 1.38971 1.21864 0.89465 0.92097 0.91026 0.89254 1.86618 1.38601 1.43796 1.67845 0.89242 0.75200 0.75838 0.87749 0.92182 0.74786 0.74526 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -55.70 13.19 21.45 0.28 -55.41 16 2 C 0.07 4.11 5.46 84.65 0.46 4.57 16 3 Si 0.99 43.82 29.54 68.60 2.03 45.85 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 7 C -1.04 -61.29 9.58 67.73 0.65 -60.65 16 8 H 0.11 6.20 7.81 -2.91 -0.02 6.18 16 9 S 2.72 154.58 4.93 -56.49 -0.28 154.30 16 10 O -1.05 -66.19 18.02 -128.00 -2.31 -68.50 16 11 O -1.01 -61.91 15.18 -119.24 -1.81 -63.72 16 12 N -1.10 -46.33 5.33 -169.01 -0.90 -47.23 16 13 C 0.14 5.24 2.29 45.08 0.10 5.34 16 14 H 0.08 3.39 7.85 -2.39 -0.02 3.37 16 15 C 0.25 8.34 3.74 72.01 0.27 8.61 16 16 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 17 O -0.53 -20.83 10.84 -118.61 -1.29 -22.12 16 18 O -0.40 -11.75 10.26 -123.03 -1.26 -13.01 16 19 C 0.06 1.22 2.65 30.63 0.08 1.30 16 20 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 21 C 0.08 1.09 6.57 71.98 0.47 1.56 16 22 O -0.59 -9.36 13.63 -144.41 -1.97 -11.32 16 23 C 0.06 1.23 2.81 30.69 0.09 1.32 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 O -0.55 -7.40 12.92 -142.94 -1.85 -9.24 16 26 C 0.12 3.12 2.82 30.71 0.09 3.21 16 27 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 28 O -0.56 -16.31 13.25 -142.94 -1.89 -18.21 16 29 H 0.30 16.58 8.31 -92.71 -0.77 15.80 16 30 H 0.41 14.89 8.84 -96.74 -0.85 14.04 16 31 H 0.39 11.49 9.12 -74.06 -0.68 10.81 16 32 H 0.10 0.45 6.62 -2.39 -0.02 0.43 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.40 2.24 9.12 -74.05 -0.68 1.56 16 35 H 0.40 1.59 7.38 -74.06 -0.55 1.04 16 36 H 0.40 7.89 8.72 -74.06 -0.65 7.25 16 Total: -1.00 -93.39 318.82 -11.23 -104.62 By element: Atomic # 1 Polarization: 40.93 SS G_CDS: -2.20 Total: 38.73 kcal Atomic # 6 Polarization: -36.94 SS G_CDS: 2.21 Total: -34.73 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -0.62 Total: -102.64 kcal Atomic # 8 Polarization: -193.76 SS G_CDS: -12.37 Total: -206.13 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 154.58 SS G_CDS: -0.28 Total: 154.30 kcal Total: -93.39 -11.23 -104.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995148.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -261.603 kcal (2) G-P(sol) polarization free energy of solvation -93.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -354.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -366.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds