Wall clock time and date at job start Tue Mar 31 2020 04:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99870 * 359.97438 * 7 2 1 10 10 O 1.42104 * 106.40184 * 293.54149 * 9 7 2 11 11 O 1.42096 * 106.40178 * 66.46061 * 9 7 2 12 12 N 1.65602 * 107.21768 * 180.02562 * 9 7 2 13 13 C 1.46502 * 119.99790 * 64.99512 * 12 9 7 14 14 H 1.08996 * 109.52479 * 335.00685 * 13 12 9 15 15 C 1.53173 * 109.52294 * 214.87290 * 13 12 9 16 16 H 1.08997 * 109.54812 * 302.98727 * 15 13 12 17 17 O 1.42903 * 109.54282 * 63.25219 * 15 13 12 18 18 C 1.53192 * 109.03333 * 183.17779 * 15 13 12 19 19 H 1.08997 * 109.47120 * 296.98750 * 18 15 13 20 20 O 1.42896 * 109.57759 * 176.85513 * 18 15 13 21 21 C 1.53090 * 109.20905 * 56.88935 * 18 15 13 22 22 H 1.09002 * 109.48205 * 62.40794 * 21 18 15 23 23 C 1.53009 * 109.47956 * 182.43918 * 21 18 15 24 24 O 1.42898 * 109.46987 * 184.94445 * 23 21 18 25 25 O 1.42901 * 109.42001 * 302.42579 * 21 18 15 26 26 C 1.42902 * 114.09620 * 61.15375 * 25 21 18 27 27 H 1.09007 * 109.47823 * 178.86113 * 26 25 21 28 28 O 1.42899 * 109.48859 * 58.84077 * 26 25 21 29 29 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 30 30 H 0.96997 * 120.00074 * 245.00699 * 12 9 7 31 31 H 0.96692 * 114.00057 * 179.97438 * 17 15 13 32 32 H 0.96699 * 114.00140 * 180.22312 * 20 18 15 33 33 H 1.08997 * 109.46718 * 304.94660 * 23 21 18 34 34 H 1.08998 * 109.46570 * 64.94275 * 23 21 18 35 35 H 0.96696 * 113.99756 * 180.02562 * 24 23 21 36 36 H 0.96698 * 114.00281 * 60.04567 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4518 -2.7956 1.2495 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9355 -0.0005 13 6 3.1394 -4.1088 1.1493 14 1 3.2464 -3.1593 1.6736 15 6 4.5127 -4.5842 0.6655 16 1 4.3998 -5.5076 0.0976 17 8 5.1014 -3.5801 -0.1636 18 6 5.4102 -4.8380 1.8808 19 1 5.5642 -3.9035 2.4202 20 8 6.6708 -5.3519 1.4462 21 6 4.7335 -5.8555 2.8030 22 1 4.6165 -6.8024 2.2759 23 6 5.5962 -6.0679 4.0487 24 8 5.0241 -7.1006 4.8539 25 8 3.4489 -5.3642 3.1911 26 6 2.5504 -5.1545 2.0998 27 1 1.5922 -4.8009 2.4807 28 8 2.3592 -6.3838 1.3967 29 1 -0.4850 0.8401 0.0004 30 1 2.3172 -4.5325 -0.7619 31 1 5.9748 -3.8148 -0.5056 32 1 7.2886 -5.5388 2.1661 33 1 6.6032 -6.3573 3.7481 34 1 5.6402 -5.1421 4.6223 35 1 5.5197 -7.2889 5.6625 36 1 1.9880 -7.0933 1.9387 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192995150.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:40 Heat of formation + Delta-G solvation = -330.847655 kcal Electronic energy + Delta-G solvation = -26299.469350 eV Core-core repulsion = 22103.461704 eV Total energy + Delta-G solvation = -4196.007646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.085 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48379 -37.51349 -37.22515 -36.03941 -35.21480 -35.08908 -33.96733 -33.90510 -33.01294 -30.79600 -29.21364 -26.07657 -26.06121 -23.45858 -22.11909 -20.56180 -19.00350 -18.41023 -18.07557 -17.56197 -17.39655 -17.11527 -16.22354 -16.12249 -15.79893 -15.37096 -14.85591 -14.80286 -14.42115 -14.07413 -13.90683 -13.88054 -13.49703 -13.24045 -12.84196 -12.57469 -11.98417 -11.91208 -11.42137 -11.24972 -11.15682 -11.15048 -10.93542 -10.65258 -10.57701 -10.36708 -10.29098 -10.23959 -10.18665 -9.88880 -9.74109 -9.18809 -9.03120 -8.53231 -6.65255 -5.25881 2.30858 3.13225 3.16536 3.22810 3.39501 3.65933 3.82767 4.07110 4.12022 4.26236 4.42918 4.68394 4.73976 4.77100 4.80935 4.91450 5.06415 5.19327 5.22052 5.39307 5.59989 5.62296 5.78817 5.89534 6.01508 6.41722 6.67934 6.83913 7.18923 7.29762 7.38708 7.70610 7.77618 7.90637 8.08071 8.95146 10.29052 Molecular weight = 313.08amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.005024 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.699817 B = 5571.465788 C = 6049.457005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.133 3.867 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.264 1.264 7 C -1.018 5.018 8 H 0.107 0.893 9 S 2.714 3.286 10 O -1.008 7.008 11 O -1.003 7.003 12 N -1.110 6.110 13 C 0.161 3.839 14 H 0.117 0.883 15 C 0.114 3.886 16 H 0.076 0.924 17 O -0.542 6.542 18 C 0.047 3.953 19 H 0.079 0.921 20 O -0.557 6.557 21 C 0.060 3.940 22 H 0.083 0.917 23 C 0.081 3.919 24 O -0.561 6.561 25 O -0.377 6.377 26 C 0.241 3.759 27 H 0.129 0.871 28 O -0.569 6.569 29 H 0.291 0.709 30 H 0.408 0.592 31 H 0.379 0.621 32 H 0.378 0.622 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.380 0.620 36 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.230 -11.564 7.797 19.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.085 4.085 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.189 1.189 6 H -0.189 1.189 7 C -1.151 5.151 8 H 0.126 0.874 9 S 2.814 3.186 10 O -0.998 6.998 11 O -0.994 6.994 12 N -0.863 5.863 13 C 0.051 3.949 14 H 0.135 0.865 15 C 0.053 3.947 16 H 0.094 0.906 17 O -0.346 6.346 18 C -0.013 4.013 19 H 0.097 0.903 20 O -0.364 6.364 21 C 0.002 3.998 22 H 0.101 0.899 23 C 0.003 3.997 24 O -0.366 6.366 25 O -0.297 6.297 26 C 0.143 3.857 27 H 0.146 0.854 28 O -0.377 6.377 29 H 0.101 0.899 30 H 0.239 0.761 31 H 0.227 0.773 32 H 0.227 0.773 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 11.981 -10.736 6.726 17.437 hybrid contribution 2.133 0.258 0.811 2.297 sum 14.114 -10.479 7.537 19.126 Atomic orbital electron populations 1.69896 1.06782 1.30765 1.40300 1.24750 0.94431 1.00810 0.88490 0.86184 0.79816 0.79623 0.79794 1.20244 1.18920 1.18856 1.30543 1.06452 1.11502 1.66635 0.87443 1.00495 0.72005 0.73237 0.72905 1.93356 1.72899 1.87544 1.45962 1.93377 1.72989 1.87510 1.45501 1.55831 1.54186 1.50950 1.25362 1.21010 0.87375 0.98813 0.87748 0.86515 1.22011 0.90888 0.92281 0.89538 0.90592 1.86639 1.37044 1.43371 1.67585 1.23319 0.84883 0.96511 0.96615 0.90336 1.86477 1.25143 1.87057 1.37728 1.22692 0.84662 0.97893 0.94580 0.89878 1.22168 0.94456 0.91323 0.91728 1.86556 1.55239 1.56828 1.38004 1.88228 1.22502 1.85122 1.33895 1.24192 0.93162 0.84841 0.83544 0.85405 1.86560 1.85919 1.23203 1.42046 0.89903 0.76096 0.77334 0.77335 0.92354 0.92326 0.77348 0.76856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.19 13.19 55.43 0.73 -24.46 16 2 C 0.13 3.76 5.46 -17.82 -0.10 3.66 16 3 Si 0.92 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 7 C -1.02 -28.50 9.58 30.60 0.29 -28.20 16 8 H 0.11 2.82 7.81 -52.49 -0.41 2.41 16 9 S 2.71 72.73 4.93 -107.50 -0.53 72.20 16 10 O -1.01 -28.86 17.34 -57.17 -0.99 -29.85 16 11 O -1.00 -30.03 18.02 -57.17 -1.03 -31.06 16 12 N -1.11 -22.94 5.22 -4.77 -0.02 -22.96 16 13 C 0.16 2.91 2.31 -67.79 -0.16 2.75 16 14 H 0.12 2.25 7.85 -51.93 -0.41 1.84 16 15 C 0.11 1.72 2.66 -26.54 -0.07 1.65 16 16 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 17 O -0.54 -8.55 13.25 -41.27 -0.55 -9.09 16 18 C 0.05 0.56 2.82 -26.59 -0.07 0.49 16 19 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 20 O -0.56 -5.38 12.93 -41.27 -0.53 -5.91 16 21 C 0.06 0.72 2.49 -26.68 -0.07 0.65 16 22 H 0.08 1.04 7.56 -51.93 -0.39 0.65 16 23 C 0.08 0.71 6.57 37.16 0.24 0.95 16 24 O -0.56 -5.38 13.62 -40.06 -0.55 -5.93 16 25 O -0.38 -5.62 10.32 -62.39 -0.64 -6.26 16 26 C 0.24 3.93 4.20 37.21 0.16 4.09 16 27 H 0.13 2.28 7.70 -51.93 -0.40 1.89 16 28 O -0.57 -8.18 11.93 -59.04 -0.70 -8.88 16 29 H 0.29 7.78 8.31 -40.82 -0.34 7.44 16 30 H 0.41 7.69 8.84 -34.47 -0.30 7.38 16 31 H 0.38 4.46 8.73 45.56 0.40 4.86 16 32 H 0.38 2.00 7.36 45.56 0.34 2.33 16 33 H 0.06 0.31 6.61 -51.93 -0.34 -0.03 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.38 1.69 9.12 45.56 0.42 2.10 16 36 H 0.38 4.02 9.12 45.56 0.42 4.43 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -39.35 320.83 -5.86 -45.21 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -1.08 Total: 20.13 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 0.23 Total: -13.96 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: 0.71 Total: -47.42 kcal Atomic # 8 Polarization: -91.99 SS G_CDS: -5.00 Total: -96.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 72.73 SS G_CDS: -0.53 Total: 72.20 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -39.35 -5.86 -45.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192995150.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -285.639 kcal (2) G-P(sol) polarization free energy of solvation -39.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -324.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -330.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds