Wall clock time and date at job start Tue Mar 31 2020 04:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99691 * 2 1 4 4 H 1.48504 * 109.46861 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46894 * 299.99855 * 3 2 1 6 6 H 1.48493 * 109.47171 * 59.99928 * 3 2 1 7 7 C 1.37873 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99637 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42096 * 106.40321 * 66.45945 * 9 7 2 11 11 O 1.42108 * 106.39883 * 293.53953 * 9 7 2 12 12 N 1.65597 * 107.22117 * 180.02562 * 9 7 2 13 13 C 1.46499 * 119.99926 * 64.72196 * 12 9 7 14 14 C 1.50700 * 109.46995 * 165.27893 * 13 12 9 15 15 C 1.34671 * 125.99116 * 95.00159 * 14 13 12 16 16 N 1.36875 * 106.81723 * 179.97438 * 15 14 13 17 17 C 1.46499 * 126.39773 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47233 * 90.00072 * 17 16 15 19 19 F 1.39903 * 109.47053 * 60.00273 * 18 17 16 20 20 F 1.39901 * 109.47505 * 179.97438 * 18 17 16 21 21 F 1.39900 * 109.47187 * 300.00115 * 18 17 16 22 22 C 1.35044 * 107.20774 * 359.97438 * 16 15 14 23 23 N 1.30502 * 108.69946 * 359.76373 * 22 16 15 24 24 H 0.96998 * 120.00473 * 359.97438 * 1 2 3 25 25 H 0.97001 * 120.00224 * 245.00409 * 12 9 7 26 26 H 1.09007 * 109.47241 * 285.27714 * 13 12 9 27 27 H 1.08995 * 109.47308 * 45.27753 * 13 12 9 28 28 H 1.08003 * 126.58837 * 359.94289 * 15 14 13 29 29 H 1.09001 * 109.47516 * 210.00144 * 17 16 15 30 30 H 1.08996 * 109.47449 * 330.00257 * 17 16 15 31 31 H 1.08003 * 125.65395 * 179.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 16 1.1237 -2.7200 -0.0005 10 8 0.4510 -2.7950 -1.2500 11 8 0.4520 -2.7955 1.2495 12 7 2.2484 -3.9354 -0.0005 13 6 3.1436 -4.1050 1.1467 14 6 3.8039 -5.4576 1.0729 15 6 5.0132 -5.7200 0.5418 16 7 5.2241 -7.0651 0.6822 17 6 6.4091 -7.8092 0.2484 18 6 7.4365 -7.8379 1.3818 19 9 6.8778 -8.4626 2.5020 20 9 8.5679 -8.5490 0.9678 21 9 7.8029 -6.5288 1.7122 22 6 4.1357 -7.5782 1.2952 23 7 3.2928 -6.6101 1.5307 24 1 -0.4851 0.8400 0.0004 25 1 2.3174 -4.5324 -0.7619 26 1 3.9067 -3.3267 1.1304 27 1 2.5690 -4.0310 2.0699 28 1 5.6870 -5.0063 0.0911 29 1 6.1236 -8.8292 -0.0090 30 1 6.8445 -7.3226 -0.6243 31 1 3.9887 -8.6170 1.5515 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:54 Heat of formation + Delta-G solvation = -209.358314 kcal Electronic energy + Delta-G solvation = -23574.229878 eV Core-core repulsion = 19181.235336 eV Total energy + Delta-G solvation = -4392.994542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.17791 -48.69787 -48.68899 -43.14165 -37.39344 -36.61358 -36.09508 -35.20682 -34.97031 -30.86218 -30.16234 -28.22487 -26.48456 -24.69350 -22.25447 -21.54799 -20.95758 -19.73001 -19.55590 -19.34018 -19.08382 -18.19185 -17.71359 -16.95571 -16.63111 -15.99256 -15.85830 -15.63215 -15.57753 -15.42487 -15.22307 -15.09057 -14.99193 -14.83341 -14.80097 -14.10240 -13.94316 -13.79889 -13.62139 -13.25367 -13.19128 -12.98924 -12.48037 -12.40611 -12.38011 -12.22726 -11.22871 -11.02801 -10.91129 -10.81751 -10.16976 -9.51924 -8.71238 -7.44385 0.34762 0.81256 1.37577 1.38352 1.43788 1.56538 1.76999 2.05166 2.26636 2.62520 2.69994 2.88400 3.14000 3.14718 3.53336 3.71474 3.80505 3.91000 4.14525 4.17910 4.36842 4.59417 4.65800 4.90144 5.05493 5.13543 5.34844 5.59380 5.95212 6.09806 6.41058 6.82249 7.07065 8.25710 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.024863 B = 0.003176 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.911691 B = 8815.159305 C = 9507.294772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.067 3.933 3 Si 0.995 3.005 4 H -0.242 1.242 5 H -0.261 1.261 6 H -0.262 1.262 7 C -1.035 5.035 8 H 0.128 0.872 9 S 2.719 3.281 10 O -1.046 7.046 11 O -1.047 7.047 12 N -1.114 6.114 13 C 0.205 3.795 14 C -0.031 4.031 15 C -0.011 4.011 16 N -0.467 5.467 17 C 0.072 3.928 18 C 0.437 3.563 19 F -0.188 7.188 20 F -0.174 7.174 21 F -0.190 7.190 22 C 0.202 3.798 23 N -0.525 5.525 24 H 0.298 0.702 25 H 0.412 0.588 26 H 0.095 0.905 27 H 0.059 0.941 28 H 0.210 0.790 29 H 0.178 0.822 30 H 0.169 0.831 31 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.943 -16.816 -0.765 26.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.146 4.146 3 Si 0.813 3.187 4 H -0.165 1.165 5 H -0.186 1.186 6 H -0.186 1.186 7 C -1.169 5.169 8 H 0.146 0.854 9 S 2.820 3.180 10 O -1.036 7.036 11 O -1.037 7.037 12 N -0.873 5.873 13 C 0.078 3.922 14 C -0.158 4.158 15 C -0.144 4.144 16 N -0.151 5.151 17 C -0.052 4.052 18 C 0.382 3.618 19 F -0.170 7.170 20 F -0.155 7.155 21 F -0.172 7.172 22 C -0.081 4.081 23 N -0.243 5.243 24 H 0.108 0.892 25 H 0.245 0.755 26 H 0.113 0.887 27 H 0.077 0.923 28 H 0.227 0.773 29 H 0.196 0.804 30 H 0.186 0.814 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 19.150 -16.908 -0.208 25.547 hybrid contribution 1.251 0.851 -0.252 1.533 sum 20.401 -16.057 -0.460 25.966 Atomic orbital electron populations 1.70016 1.08964 1.32253 1.41628 1.26088 0.95364 1.05593 0.87532 0.85042 0.79710 0.74834 0.79157 1.16453 1.18553 1.18635 1.30913 1.07462 1.12099 1.66456 0.85433 0.99896 0.72642 0.74058 0.71365 1.93302 1.74905 1.88505 1.46919 1.93304 1.74728 1.88289 1.47379 1.55350 1.54908 1.49506 1.27522 1.19342 0.92395 0.92360 0.88079 1.20548 0.95059 0.94099 1.06109 1.22921 0.99620 0.85408 1.06473 1.45337 1.15838 1.07514 1.46441 1.23387 0.82472 1.04574 0.94761 1.21210 0.82593 0.73467 0.84569 1.93222 1.84980 1.82682 1.56094 1.93236 1.53782 1.78566 1.89943 1.93227 1.92579 1.37690 1.93681 1.25831 0.82987 1.01194 0.98066 1.70177 1.31552 0.99762 1.22793 0.89187 0.75469 0.88660 0.92266 0.77286 0.80431 0.81381 0.73935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.33 13.19 21.45 0.28 -54.05 16 2 C 0.07 3.72 5.46 84.65 0.46 4.18 16 3 Si 0.99 41.03 29.54 68.60 2.03 43.05 16 4 H -0.24 -9.07 7.11 99.48 0.71 -8.36 16 5 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -1.04 -56.75 9.71 67.73 0.66 -56.10 16 8 H 0.13 6.11 7.81 -2.91 -0.02 6.09 16 9 S 2.72 150.48 5.02 -56.49 -0.28 150.20 16 10 O -1.05 -64.23 18.02 -128.00 -2.31 -66.54 16 11 O -1.05 -65.52 17.50 -128.00 -2.24 -67.76 16 12 N -1.11 -46.13 5.99 -190.79 -1.14 -47.28 16 13 C 0.20 7.41 6.75 85.63 0.58 7.99 16 14 C -0.03 -0.91 6.49 41.39 0.27 -0.65 16 15 C -0.01 -0.22 11.32 83.09 0.94 0.72 16 16 N -0.47 -6.64 2.62 -529.07 -1.39 -8.03 16 17 C 0.07 0.30 6.12 86.38 0.53 0.83 16 18 C 0.44 4.38 3.29 71.98 0.24 4.62 16 19 F -0.19 -2.66 17.05 44.97 0.77 -1.89 16 20 F -0.17 -1.69 17.32 44.97 0.78 -0.91 16 21 F -0.19 -2.93 17.08 44.97 0.77 -2.17 16 22 C 0.20 3.81 12.37 180.26 2.23 6.04 16 23 N -0.52 -15.95 11.25 -188.31 -2.12 -18.07 16 24 H 0.30 16.15 8.31 -92.71 -0.77 15.38 16 25 H 0.41 15.12 8.64 -96.74 -0.84 14.28 16 26 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 27 H 0.06 2.45 7.76 -2.39 -0.02 2.43 16 28 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 29 H 0.18 -0.55 8.14 -2.39 -0.02 -0.57 16 30 H 0.17 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.24 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -89.18 310.49 1.42 -87.77 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.37 Total: 18.04 kcal Atomic # 6 Polarization: -38.28 SS G_CDS: 5.90 Total: -32.38 kcal Atomic # 7 Polarization: -123.05 SS G_CDS: -4.36 Total: -127.42 kcal Atomic # 8 Polarization: -129.75 SS G_CDS: -4.55 Total: -134.30 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 2.31 Total: -4.97 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 150.48 SS G_CDS: -0.28 Total: 150.20 kcal Total: -89.18 1.42 -87.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.592 kcal (2) G-P(sol) polarization free energy of solvation -89.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds