Wall clock time and date at job start Tue Mar 31 2020 04:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48493 * 109.47477 * 270.00286 * 3 2 1 5 5 H 1.48501 * 109.46932 * 30.00371 * 3 2 1 6 6 H 1.48503 * 109.47066 * 150.00254 * 3 2 1 7 7 C 1.37873 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00341 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00115 * 359.97438 * 7 2 1 10 10 O 1.42106 * 106.39905 * 66.46347 * 9 7 2 11 11 O 1.42096 * 106.40154 * 293.54820 * 9 7 2 12 12 N 1.65594 * 107.21773 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00150 * 65.00603 * 12 9 7 14 14 C 1.50696 * 109.47206 * 164.99699 * 13 12 9 15 15 N 1.30498 * 125.65039 * 270.02103 * 14 13 12 16 16 C 1.34129 * 109.25671 * 179.73373 * 15 14 13 17 17 C 1.34666 * 108.02165 * 0.40230 * 16 15 14 18 18 N 1.35047 * 125.65399 * 89.99641 * 14 13 12 19 19 C 1.46507 * 126.39328 * 0.02641 * 18 14 13 20 20 C 1.52992 * 109.47505 * 85.01935 * 19 18 14 21 21 F 1.39899 * 109.47348 * 59.99730 * 20 19 18 22 22 F 1.39893 * 109.47176 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.47280 * 300.00029 * 20 19 18 24 24 H 0.97001 * 119.99943 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00214 * 245.00087 * 12 9 7 26 26 H 1.09001 * 109.47072 * 44.99119 * 13 12 9 27 27 H 1.09000 * 109.46671 * 284.99634 * 13 12 9 28 28 H 1.08003 * 125.99108 * 180.25065 * 16 15 14 29 29 H 1.08002 * 126.59556 * 179.87817 * 17 16 15 30 30 H 1.09000 * 109.46583 * 205.02344 * 19 18 14 31 31 H 1.09008 * 109.46472 * 325.01713 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2501 11 8 0.4518 -2.7955 1.2493 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1088 1.1494 14 6 3.7947 -5.4639 1.0771 15 7 3.3251 -6.5646 1.5975 16 6 4.1675 -7.5740 1.3321 17 6 5.2028 -7.0784 0.6278 18 7 4.9651 -5.7405 0.4628 19 6 5.8207 -4.7867 -0.2475 20 6 6.7437 -4.0869 0.7520 21 9 7.5412 -5.0389 1.3960 22 9 7.5603 -3.1757 0.0738 23 9 5.9732 -3.4056 1.7005 24 1 -0.4850 0.8401 0.0004 25 1 2.3173 -4.5324 -0.7619 26 1 2.5622 -4.0329 2.0709 27 1 3.9054 -3.3335 1.1356 28 1 4.0394 -8.6034 1.6327 29 1 6.0545 -7.6311 0.2597 30 1 6.4210 -5.3175 -0.9865 31 1 5.1992 -4.0449 -0.7493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:59 Heat of formation + Delta-G solvation = -177.077852 kcal Electronic energy + Delta-G solvation = -24730.013841 eV Core-core repulsion = 20338.419085 eV Total energy + Delta-G solvation = -4391.594756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.44700 -47.97101 -47.91470 -42.28649 -35.33509 -34.93472 -34.65625 -33.98201 -33.10788 -29.91103 -29.22774 -26.18497 -25.46666 -24.07554 -21.62399 -20.34532 -19.17339 -18.88436 -18.81187 -18.31986 -17.48109 -16.95879 -16.19453 -15.53142 -15.19412 -15.08504 -14.79963 -14.59869 -14.57324 -14.32957 -14.07049 -14.04745 -14.02741 -13.79074 -13.36321 -13.20473 -12.89011 -12.64501 -12.43536 -12.02365 -11.31574 -11.24150 -10.63296 -10.58366 -10.31824 -10.22159 -10.07037 -9.97107 -9.28062 -9.13893 -8.64480 -8.55376 -6.73672 -5.37088 1.53578 2.07545 2.31023 2.47412 3.04371 3.06072 3.12865 3.18323 3.34301 3.49534 3.82823 4.03504 4.30304 4.33489 4.54514 4.61495 4.63215 4.74388 5.20801 5.34314 5.66735 5.75575 5.91226 6.00710 6.34651 6.56738 6.66970 6.86439 7.27481 7.73534 7.90135 7.97930 8.84808 10.20685 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005519 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.146796 B = 5072.169106 C = 6438.132547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.134 3.866 3 Si 0.920 3.080 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.262 1.262 7 C -1.021 5.021 8 H 0.102 0.898 9 S 2.714 3.286 10 O -1.002 7.002 11 O -1.000 7.000 12 N -1.133 6.133 13 C 0.205 3.795 14 C 0.221 3.779 15 N -0.465 5.465 16 C -0.020 4.020 17 C -0.053 4.053 18 N -0.461 5.461 19 C 0.060 3.940 20 C 0.440 3.560 21 F -0.178 7.178 22 F -0.172 7.172 23 F -0.168 7.168 24 H 0.292 0.708 25 H 0.403 0.597 26 H 0.111 0.889 27 H 0.080 0.920 28 H 0.175 0.825 29 H 0.179 0.821 30 H 0.140 0.860 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.246 -9.832 -0.959 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.085 4.085 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.186 1.186 7 C -1.155 5.155 8 H 0.120 0.880 9 S 2.813 3.187 10 O -0.992 6.992 11 O -0.989 6.989 12 N -0.887 5.887 13 C 0.076 3.924 14 C -0.042 4.042 15 N -0.183 5.183 16 C -0.167 4.167 17 C -0.184 4.184 18 N -0.147 5.147 19 C -0.066 4.066 20 C 0.384 3.616 21 F -0.159 7.159 22 F -0.154 7.154 23 F -0.149 7.149 24 H 0.102 0.898 25 H 0.233 0.767 26 H 0.129 0.871 27 H 0.098 0.902 28 H 0.192 0.808 29 H 0.196 0.804 30 H 0.158 0.842 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 14.459 -9.757 -0.360 17.447 hybrid contribution 2.125 1.008 -0.690 2.451 sum 16.584 -8.748 -1.050 18.780 Atomic orbital electron populations 1.69894 1.06785 1.30835 1.39687 1.24732 0.94462 1.00799 0.88493 0.86174 0.80218 0.80107 0.79152 1.19218 1.19910 1.18596 1.30503 1.05963 1.11712 1.67275 0.88002 1.00552 0.72036 0.73096 0.72987 1.93385 1.72663 1.87550 1.45650 1.93374 1.72517 1.87286 1.45764 1.56159 1.55831 1.51216 1.25537 1.19532 0.93361 0.87321 0.92171 1.23633 0.85358 0.97843 0.97368 1.70406 1.28606 0.97818 1.21485 1.22412 0.92510 0.99273 1.02517 1.22755 1.04033 0.83055 1.08534 1.45148 1.18551 1.08127 1.42893 1.23055 0.94755 0.95539 0.93248 1.20788 0.80621 0.77953 0.82204 1.93219 1.75497 1.63946 1.83273 1.93237 1.74219 1.68293 1.79614 1.93259 1.74332 1.80701 1.66609 0.89789 0.76688 0.87099 0.90168 0.80826 0.80383 0.84200 0.83660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.30 13.19 55.43 0.73 -23.57 16 2 C 0.13 3.62 5.46 -17.82 -0.10 3.52 16 3 Si 0.92 19.97 29.54 -169.99 -5.02 14.95 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -1.02 -26.78 9.72 30.60 0.30 -26.49 16 8 H 0.10 2.37 7.81 -52.49 -0.41 1.96 16 9 S 2.71 69.80 5.02 -107.50 -0.54 69.26 16 10 O -1.00 -28.63 18.02 -57.17 -1.03 -29.66 16 11 O -1.00 -28.83 17.49 -57.17 -1.00 -29.83 16 12 N -1.13 -21.67 5.99 -11.66 -0.07 -21.73 16 13 C 0.20 3.51 6.26 -5.19 -0.03 3.48 16 14 C 0.22 3.35 6.95 -155.42 -1.08 2.27 16 15 N -0.47 -7.54 11.25 -10.82 -0.12 -7.66 16 16 C -0.02 -0.24 11.87 -17.81 -0.21 -0.46 16 17 C -0.05 -0.53 11.58 -16.56 -0.19 -0.72 16 18 N -0.46 -5.25 2.64 -113.90 -0.30 -5.55 16 19 C 0.06 0.50 5.69 -4.04 -0.02 0.48 16 20 C 0.44 4.44 3.29 37.15 0.12 4.56 16 21 F -0.18 -1.85 17.24 2.25 0.04 -1.81 16 22 F -0.17 -1.72 17.32 2.25 0.04 -1.68 16 23 F -0.17 -2.15 14.74 2.25 0.03 -2.12 16 24 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.40 6.74 8.64 -34.47 -0.30 6.44 16 26 H 0.11 2.06 7.75 -51.93 -0.40 1.66 16 27 H 0.08 1.24 5.72 -51.93 -0.30 0.94 16 28 H 0.17 1.61 8.06 -52.48 -0.42 1.18 16 29 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.15 1.16 7.91 -51.92 -0.41 0.75 16 LS Contribution 304.96 15.07 4.60 4.60 Total: -1.00 -36.69 304.96 -6.08 -42.77 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.22 Total: 5.40 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.22 Total: -13.36 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.24 Total: -58.51 kcal Atomic # 8 Polarization: -57.46 SS G_CDS: -2.03 Total: -59.49 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.11 Total: -5.61 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: 69.80 SS G_CDS: -0.54 Total: 69.26 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -36.69 -6.08 -42.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.306 kcal (2) G-P(sol) polarization free energy of solvation -36.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds