Wall clock time and date at job start Tue Mar 31 2020 04:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99964 * 2 1 4 4 H 1.48493 * 109.47477 * 270.00286 * 3 2 1 5 5 H 1.48501 * 109.46932 * 30.00371 * 3 2 1 6 6 H 1.48503 * 109.47066 * 150.00254 * 3 2 1 7 7 C 1.37873 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00341 * 180.02562 * 7 2 1 9 9 S 1.76206 * 120.00115 * 359.97438 * 7 2 1 10 10 O 1.42106 * 106.39905 * 66.46347 * 9 7 2 11 11 O 1.42096 * 106.40154 * 293.54820 * 9 7 2 12 12 N 1.65594 * 107.21773 * 180.02562 * 9 7 2 13 13 C 1.46503 * 120.00150 * 65.00603 * 12 9 7 14 14 C 1.50696 * 109.47206 * 164.99699 * 13 12 9 15 15 N 1.30498 * 125.65039 * 270.02103 * 14 13 12 16 16 C 1.34129 * 109.25671 * 179.73373 * 15 14 13 17 17 C 1.34666 * 108.02165 * 0.40230 * 16 15 14 18 18 N 1.35047 * 125.65399 * 89.99641 * 14 13 12 19 19 C 1.46507 * 126.39328 * 0.02641 * 18 14 13 20 20 C 1.52992 * 109.47505 * 85.01935 * 19 18 14 21 21 F 1.39899 * 109.47348 * 59.99730 * 20 19 18 22 22 F 1.39893 * 109.47176 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.47280 * 300.00029 * 20 19 18 24 24 H 0.97001 * 119.99943 * 359.97438 * 1 2 3 25 25 H 0.97000 * 120.00214 * 245.00087 * 12 9 7 26 26 H 1.09001 * 109.47072 * 44.99119 * 13 12 9 27 27 H 1.09000 * 109.46671 * 284.99634 * 13 12 9 28 28 H 1.08003 * 125.99108 * 180.25065 * 16 15 14 29 29 H 1.08002 * 126.59556 * 179.87817 * 17 16 15 30 30 H 1.09000 * 109.46583 * 205.02344 * 19 18 14 31 31 H 1.09008 * 109.46472 * 325.01713 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4511 -2.7950 -1.2501 11 8 0.4518 -2.7955 1.2493 12 7 2.2484 -3.9353 -0.0005 13 6 3.1394 -4.1088 1.1494 14 6 3.7947 -5.4639 1.0771 15 7 3.3251 -6.5646 1.5975 16 6 4.1675 -7.5740 1.3321 17 6 5.2028 -7.0784 0.6278 18 7 4.9651 -5.7405 0.4628 19 6 5.8207 -4.7867 -0.2475 20 6 6.7437 -4.0869 0.7520 21 9 7.5412 -5.0389 1.3960 22 9 7.5603 -3.1757 0.0738 23 9 5.9732 -3.4056 1.7005 24 1 -0.4850 0.8401 0.0004 25 1 2.3173 -4.5324 -0.7619 26 1 2.5622 -4.0329 2.0709 27 1 3.9054 -3.3335 1.1356 28 1 4.0394 -8.6034 1.6327 29 1 6.0545 -7.6311 0.2597 30 1 6.4210 -5.3175 -0.9865 31 1 5.1992 -4.0449 -0.7493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001288.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:58 Heat of formation + Delta-G solvation = -206.567898 kcal Electronic energy + Delta-G solvation = -24731.292625 eV Core-core repulsion = 20338.419085 eV Total energy + Delta-G solvation = -4392.873541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.24776 -48.77434 -48.73612 -43.23105 -37.44518 -36.31188 -36.14418 -35.68248 -35.14224 -30.97009 -30.11164 -28.25369 -26.73221 -24.86367 -22.51047 -21.42858 -21.01466 -19.73863 -19.62521 -19.50077 -19.12196 -18.20502 -17.85083 -17.01320 -16.77691 -16.12771 -15.86797 -15.82953 -15.59414 -15.42400 -15.33554 -15.14213 -14.90828 -14.85212 -14.62191 -14.18761 -14.06200 -13.94562 -13.72481 -13.32087 -13.25488 -12.98780 -12.54199 -12.50670 -12.43268 -12.28229 -11.22590 -11.07517 -11.03966 -10.93467 -10.35947 -9.50681 -8.73915 -7.47397 0.20069 0.74992 1.32191 1.37637 1.38479 1.53853 1.69256 2.05397 2.23754 2.59420 2.60672 2.80641 2.99525 3.03280 3.24352 3.63911 3.69692 3.77141 4.04671 4.27893 4.35316 4.48023 4.53914 4.71867 4.90406 5.10312 5.30145 5.72887 5.89449 5.91123 6.21888 6.79949 7.01412 8.22996 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005519 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.146796 B = 5072.169106 C = 6438.132547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.990 3.010 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.245 1.245 7 C -1.033 5.033 8 H 0.128 0.872 9 S 2.719 3.281 10 O -1.039 7.039 11 O -1.042 7.042 12 N -1.115 6.115 13 C 0.205 3.795 14 C 0.190 3.810 15 N -0.506 5.506 16 C -0.049 4.049 17 C -0.019 4.019 18 N -0.454 5.454 19 C 0.056 3.944 20 C 0.439 3.561 21 F -0.179 7.179 22 F -0.171 7.171 23 F -0.189 7.189 24 H 0.299 0.701 25 H 0.415 0.585 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.228 0.772 30 H 0.189 0.811 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.498 -10.124 -1.952 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.191 1.191 6 H -0.168 1.168 7 C -1.167 5.167 8 H 0.146 0.854 9 S 2.820 3.180 10 O -1.030 7.030 11 O -1.032 7.032 12 N -0.874 5.874 13 C 0.077 3.923 14 C -0.072 4.072 15 N -0.225 5.225 16 C -0.196 4.196 17 C -0.150 4.150 18 N -0.139 5.139 19 C -0.068 4.068 20 C 0.384 3.616 21 F -0.161 7.161 22 F -0.152 7.152 23 F -0.171 7.171 24 H 0.109 0.891 25 H 0.249 0.751 26 H 0.104 0.896 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.244 0.756 30 H 0.206 0.794 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.714 -10.066 -1.366 20.420 hybrid contribution 1.209 0.942 -0.363 1.575 sum 18.922 -9.124 -1.729 21.078 Atomic orbital electron populations 1.70002 1.08879 1.32374 1.41290 1.26018 0.95324 1.05399 0.87558 0.85134 0.79227 0.74776 0.80098 1.17715 1.19142 1.16777 1.30817 1.07386 1.11770 1.66747 0.85373 0.99998 0.72524 0.73941 0.71533 1.93323 1.74494 1.88353 1.46787 1.93317 1.74439 1.88130 1.47294 1.55450 1.55120 1.49989 1.26846 1.19481 0.92986 0.89854 0.89992 1.22922 0.87448 0.96612 1.00256 1.70289 1.30692 0.99207 1.22354 1.22931 0.93005 0.99723 1.03919 1.23508 1.03898 0.82143 1.05445 1.45212 1.17552 1.09159 1.41970 1.23441 0.94628 0.95711 0.93002 1.21034 0.80722 0.77861 0.82030 1.93215 1.75567 1.63850 1.83426 1.93240 1.74200 1.68356 1.79437 1.93218 1.74926 1.81268 1.67639 0.89115 0.75148 0.89634 0.88512 0.78707 0.75583 0.79361 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.63 13.19 21.45 0.28 -52.35 16 2 C 0.07 3.79 5.46 84.65 0.46 4.25 16 3 Si 0.99 39.84 29.54 68.60 2.03 41.87 16 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.24 -9.09 7.11 99.48 0.71 -8.38 16 7 C -1.03 -54.14 9.72 67.73 0.66 -53.48 16 8 H 0.13 5.79 7.81 -2.91 -0.02 5.77 16 9 S 2.72 143.66 5.02 -56.49 -0.28 143.38 16 10 O -1.04 -61.17 18.02 -128.00 -2.31 -63.48 16 11 O -1.04 -62.73 17.49 -128.00 -2.24 -64.97 16 12 N -1.11 -43.11 5.99 -190.79 -1.14 -44.26 16 13 C 0.20 7.09 6.26 85.63 0.54 7.62 16 14 C 0.19 5.62 6.95 138.13 0.96 6.58 16 15 N -0.51 -16.21 11.25 -188.13 -2.12 -18.33 16 16 C -0.05 -1.10 11.87 83.52 0.99 -0.11 16 17 C -0.02 -0.30 11.58 83.09 0.96 0.66 16 18 N -0.45 -9.01 2.64 -514.28 -1.36 -10.37 16 19 C 0.06 0.74 5.69 86.38 0.49 1.23 16 20 C 0.44 7.66 3.29 71.98 0.24 7.89 16 21 F -0.18 -3.18 17.24 44.97 0.78 -2.41 16 22 F -0.17 -2.94 17.32 44.97 0.78 -2.17 16 23 F -0.19 -4.60 14.74 44.97 0.66 -3.93 16 24 H 0.30 15.81 8.31 -92.71 -0.77 15.04 16 25 H 0.42 13.88 8.64 -96.75 -0.84 13.04 16 26 H 0.09 3.36 7.75 -2.39 -0.02 3.34 16 27 H 0.10 2.97 5.72 -2.39 -0.01 2.95 16 28 H 0.20 3.18 8.06 -2.91 -0.02 3.15 16 29 H 0.23 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.19 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.15 1.90 7.91 -2.38 -0.02 1.89 16 Total: -1.00 -82.91 304.96 0.75 -82.16 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.37 Total: 20.22 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: 5.30 Total: -25.36 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -4.33 Total: -125.31 kcal Atomic # 8 Polarization: -123.90 SS G_CDS: -4.54 Total: -128.45 kcal Atomic # 9 Polarization: -10.72 SS G_CDS: 2.22 Total: -8.50 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Atomic # 16 Polarization: 143.66 SS G_CDS: -0.28 Total: 143.38 kcal Total: -82.91 0.75 -82.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001288.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.408 kcal (2) G-P(sol) polarization free energy of solvation -82.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds