Wall clock time and date at job start Tue Mar 31 2020 04:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48506 * 109.46856 * 269.99459 * 3 2 1 5 5 H 1.48495 * 109.47455 * 29.99802 * 3 2 1 6 6 H 1.48509 * 109.46911 * 149.99803 * 3 2 1 7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99893 * 0.02562 * 7 2 1 9 9 S 1.76193 * 119.99968 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40471 * 66.46292 * 9 7 2 11 11 O 1.42104 * 106.40610 * 293.54178 * 9 7 2 12 12 N 1.65603 * 107.21951 * 180.02562 * 9 7 2 13 13 C 1.46495 * 120.00230 * 64.99722 * 12 9 7 14 14 C 1.50701 * 109.47471 * 165.00251 * 13 12 9 15 15 C 1.39868 * 126.03767 * 90.02410 * 14 13 12 16 16 N 1.30844 * 108.19764 * 179.97438 * 15 14 13 17 17 N 1.40078 * 108.20890 * 0.02562 * 16 15 14 18 18 C 1.46495 * 126.04021 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47183 * 304.97729 * 18 17 16 20 20 F 1.39894 * 109.47307 * 59.99508 * 19 18 17 21 21 F 1.39898 * 109.47180 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.46834 * 299.99633 * 19 18 17 23 23 C 1.34957 * 107.92650 * 0.02562 * 17 16 15 24 24 H 0.97000 * 120.00361 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00046 * 245.00112 * 12 9 7 26 26 H 1.09002 * 109.47021 * 45.00420 * 13 12 9 27 27 H 1.09005 * 109.47026 * 285.00497 * 13 12 9 28 28 H 1.07995 * 125.89923 * 0.21784 * 15 14 13 29 29 H 1.09001 * 109.47177 * 64.97492 * 18 17 16 30 30 H 1.08999 * 109.47527 * 184.97205 * 18 17 16 31 31 H 1.07995 * 126.12756 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7664 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1683 -0.6499 -1.2485 12 7 4.2567 -2.7759 0.0011 13 6 3.9618 -3.6341 -1.1490 14 6 4.8076 -4.8792 -1.0768 15 6 4.4574 -6.0763 -0.4437 16 7 5.4441 -6.9223 -0.5949 17 7 6.4549 -6.2891 -1.3294 18 6 7.7363 -6.8818 -1.7205 19 6 8.4571 -7.4050 -0.4766 20 9 7.6657 -8.3752 0.1475 21 9 9.6805 -7.9715 -0.8502 22 9 8.6841 -6.3472 0.4104 23 6 6.0404 -5.0363 -1.6120 24 1 -0.4851 0.8400 -0.0004 25 1 4.7390 -3.1343 0.7625 26 1 4.1850 -3.0962 -2.0704 27 1 2.9073 -3.9098 -1.1357 28 1 3.5309 -6.2702 0.0762 29 1 7.5595 -7.7060 -2.4116 30 1 8.3529 -6.1259 -2.2068 31 1 6.5930 -4.2929 -2.1673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193001434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:52 Heat of formation + Delta-G solvation = -149.647220 kcal Electronic energy + Delta-G solvation = -23660.189967 eV Core-core repulsion = 19269.784693 eV Total energy + Delta-G solvation = -4390.405275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.45880 -48.02681 -47.87385 -41.42911 -35.69254 -35.23522 -34.40463 -33.78079 -33.00793 -30.39236 -29.07120 -26.39882 -25.02606 -23.95576 -21.33624 -20.56942 -19.11389 -18.96480 -18.87263 -18.04769 -17.45658 -16.94417 -16.51066 -15.54529 -15.38692 -14.94335 -14.82071 -14.67985 -14.44704 -14.34812 -14.06308 -14.03057 -13.82910 -13.66824 -13.29927 -13.23237 -12.91734 -12.83417 -12.39938 -12.23207 -11.54727 -11.35185 -10.82010 -10.66259 -10.59436 -10.48136 -9.86218 -9.71469 -9.21464 -9.19701 -8.69820 -8.53394 -6.78775 -5.32359 1.46026 1.87121 2.07540 2.32394 2.71455 3.09150 3.19032 3.25658 3.28667 3.46772 3.75992 3.96915 4.24863 4.45883 4.47149 4.61425 4.62084 4.81353 5.21912 5.31967 5.39829 5.63121 5.97013 6.13506 6.26711 6.43969 6.58922 6.66527 7.43132 7.49288 7.78155 8.22755 8.72652 10.33561 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.003151 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.020299 B = 8884.252747 C = 9204.944632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.122 0.878 9 S 2.676 3.324 10 O -1.009 7.009 11 O -1.013 7.013 12 N -1.122 6.122 13 C 0.201 3.799 14 C -0.228 4.228 15 C 0.076 3.924 16 N -0.289 5.289 17 N -0.393 5.393 18 C 0.100 3.900 19 C 0.444 3.556 20 F -0.164 7.164 21 F -0.179 7.179 22 F -0.177 7.177 23 C 0.078 3.922 24 H 0.280 0.720 25 H 0.406 0.594 26 H 0.083 0.917 27 H 0.075 0.925 28 H 0.192 0.808 29 H 0.129 0.871 30 H 0.140 0.860 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.260 -14.692 -5.228 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.622 3.378 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.150 5.150 8 H 0.140 0.860 9 S 2.778 3.222 10 O -1.000 7.000 11 O -1.003 7.003 12 N -0.878 5.878 13 C 0.074 3.926 14 C -0.240 4.240 15 C -0.112 4.112 16 N -0.108 5.108 17 N -0.176 5.176 18 C -0.025 4.025 19 C 0.388 3.612 20 F -0.146 7.146 21 F -0.161 7.161 22 F -0.158 7.158 23 C -0.066 4.066 24 H 0.091 0.909 25 H 0.238 0.762 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.209 0.791 29 H 0.146 0.854 30 H 0.158 0.842 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 15.146 -15.037 -5.174 21.960 hybrid contribution -0.402 0.954 0.357 1.095 sum 14.744 -14.083 -4.817 20.950 Atomic orbital electron populations 1.69987 1.06609 1.29016 1.39717 1.24431 0.94773 0.98830 0.88625 0.87857 0.83594 0.84553 0.81766 1.17037 1.18008 1.14217 1.30479 1.15729 1.02159 1.66632 0.86002 1.01298 0.77264 0.70442 0.73212 1.93477 1.85514 1.75920 1.45061 1.93396 1.85043 1.76206 1.45666 1.55577 1.74334 1.31166 1.26769 1.19340 0.97276 0.86737 0.89250 1.20313 0.97132 0.98038 1.08560 1.24076 0.98150 0.91125 0.97897 1.77543 0.97368 1.21084 1.14763 1.48066 1.13643 1.10721 1.45219 1.22699 0.82879 1.03471 0.93432 1.20640 0.77585 0.76590 0.86369 1.93281 1.73426 1.63680 1.84179 1.93217 1.45852 1.85673 1.91320 1.93246 1.94716 1.56630 1.71202 1.22523 0.96426 0.86982 1.00717 0.90942 0.76248 0.89926 0.90705 0.79116 0.85355 0.84222 0.80087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.51 13.96 55.43 0.77 -22.74 16 2 C 0.15 4.32 5.47 -17.82 -0.10 4.22 16 3 Si 0.80 20.33 26.54 -169.99 -4.51 15.82 16 4 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.26 -5.99 7.11 56.52 0.40 -5.58 16 6 H -0.22 -5.69 5.61 56.52 0.32 -5.37 16 7 C -1.02 -27.54 10.26 30.60 0.31 -27.23 16 8 H 0.12 3.30 8.06 -52.49 -0.42 2.88 16 9 S 2.68 64.32 4.24 -107.50 -0.46 63.87 16 10 O -1.01 -26.65 16.02 -57.17 -0.92 -27.57 16 11 O -1.01 -25.84 16.30 -57.17 -0.93 -26.77 16 12 N -1.12 -20.22 5.99 -11.66 -0.07 -20.29 16 13 C 0.20 3.06 6.70 -5.20 -0.03 3.02 16 14 C -0.23 -2.89 5.50 -105.05 -0.58 -3.46 16 15 C 0.08 0.93 11.96 -17.36 -0.21 0.72 16 16 N -0.29 -3.66 11.51 30.62 0.35 -3.31 16 17 N -0.39 -4.05 3.60 -61.37 -0.22 -4.27 16 18 C 0.10 0.63 6.51 -4.04 -0.03 0.61 16 19 C 0.44 3.90 3.28 37.16 0.12 4.02 16 20 F -0.16 -1.85 16.28 2.25 0.04 -1.81 16 21 F -0.18 -1.43 17.32 2.25 0.04 -1.40 16 22 F -0.18 -1.94 17.24 2.25 0.04 -1.91 16 23 C 0.08 0.82 11.36 -17.22 -0.20 0.63 16 24 H 0.28 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.41 6.55 8.65 -34.47 -0.30 6.25 16 26 H 0.08 1.25 7.75 -51.93 -0.40 0.84 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.19 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.14 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.18 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -35.30 303.07 -4.45 -39.75 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -2.45 Total: 3.52 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -0.70 Total: -17.47 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: 0.84 Total: -50.61 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -1.85 Total: -54.34 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.11 Total: -5.11 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.51 Total: 15.82 kcal Atomic # 16 Polarization: 64.32 SS G_CDS: -0.46 Total: 63.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.30 -4.45 -39.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.894 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds