Wall clock time and date at job start Tue Mar 31 2020 04:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48506 * 109.46856 * 269.99459 * 3 2 1 5 5 H 1.48495 * 109.47455 * 29.99802 * 3 2 1 6 6 H 1.48509 * 109.46911 * 149.99803 * 3 2 1 7 7 C 1.37879 * 119.99933 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99893 * 0.02562 * 7 2 1 9 9 S 1.76193 * 119.99968 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40471 * 66.46292 * 9 7 2 11 11 O 1.42104 * 106.40610 * 293.54178 * 9 7 2 12 12 N 1.65603 * 107.21951 * 180.02562 * 9 7 2 13 13 C 1.46495 * 120.00230 * 64.99722 * 12 9 7 14 14 C 1.50701 * 109.47471 * 165.00251 * 13 12 9 15 15 C 1.39868 * 126.03767 * 90.02410 * 14 13 12 16 16 N 1.30844 * 108.19764 * 179.97438 * 15 14 13 17 17 N 1.40078 * 108.20890 * 0.02562 * 16 15 14 18 18 C 1.46495 * 126.04021 * 179.97438 * 17 16 15 19 19 C 1.53000 * 109.47183 * 304.97729 * 18 17 16 20 20 F 1.39894 * 109.47307 * 59.99508 * 19 18 17 21 21 F 1.39898 * 109.47180 * 179.97438 * 19 18 17 22 22 F 1.39902 * 109.46834 * 299.99633 * 19 18 17 23 23 C 1.34957 * 107.92650 * 0.02562 * 17 16 15 24 24 H 0.97000 * 120.00361 * 0.02562 * 1 2 3 25 25 H 0.97002 * 120.00046 * 245.00112 * 12 9 7 26 26 H 1.09002 * 109.47021 * 45.00420 * 13 12 9 27 27 H 1.09005 * 109.47026 * 285.00497 * 13 12 9 28 28 H 1.07995 * 125.89923 * 0.21784 * 15 14 13 29 29 H 1.09001 * 109.47177 * 64.97492 * 18 17 16 30 30 H 1.08999 * 109.47527 * 184.97205 * 18 17 16 31 31 H 1.07995 * 126.12756 * 180.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7664 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1683 -0.6499 -1.2485 12 7 4.2567 -2.7759 0.0011 13 6 3.9618 -3.6341 -1.1490 14 6 4.8076 -4.8792 -1.0768 15 6 4.4574 -6.0763 -0.4437 16 7 5.4441 -6.9223 -0.5949 17 7 6.4549 -6.2891 -1.3294 18 6 7.7363 -6.8818 -1.7205 19 6 8.4571 -7.4050 -0.4766 20 9 7.6657 -8.3752 0.1475 21 9 9.6805 -7.9715 -0.8502 22 9 8.6841 -6.3472 0.4104 23 6 6.0404 -5.0363 -1.6120 24 1 -0.4851 0.8400 -0.0004 25 1 4.7390 -3.1343 0.7625 26 1 4.1850 -3.0962 -2.0704 27 1 2.9073 -3.9098 -1.1357 28 1 3.5309 -6.2702 0.0762 29 1 7.5595 -7.7060 -2.4116 30 1 8.3529 -6.1259 -2.2068 31 1 6.5930 -4.2929 -2.1673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193001434.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:51 Heat of formation + Delta-G solvation = -177.755485 kcal Electronic energy + Delta-G solvation = -23661.408833 eV Core-core repulsion = 19269.784693 eV Total energy + Delta-G solvation = -4391.624141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.16850 -48.72184 -48.63931 -42.27701 -37.62572 -36.46511 -36.40414 -35.12909 -34.66557 -31.34656 -29.92398 -28.49732 -26.10194 -24.71355 -22.12501 -21.51329 -20.98327 -19.68375 -19.59510 -19.37501 -18.84610 -18.49278 -17.68957 -17.04915 -16.77128 -16.06897 -15.69669 -15.56879 -15.48302 -15.25165 -15.22674 -15.08408 -14.96611 -14.81713 -14.77889 -14.52488 -14.14301 -13.89794 -13.43312 -13.38055 -13.23773 -13.02234 -12.71412 -12.61999 -12.49285 -11.83565 -11.58781 -11.28127 -11.13776 -10.54558 -10.14372 -9.60120 -8.90799 -7.45727 0.19770 0.71088 1.10130 1.19210 1.19502 1.26790 1.67744 1.72226 1.94203 2.48426 2.63112 2.78197 2.90061 3.11372 3.39823 3.61156 3.89993 4.04040 4.07874 4.19930 4.34365 4.47325 4.66751 4.79943 5.15236 5.18910 5.44941 5.55273 5.85592 6.08878 6.38178 6.57174 6.60771 8.26673 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.034263 B = 0.003151 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.020299 B = 8884.252747 C = 9204.944632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.108 3.892 3 Si 0.825 3.175 4 H -0.237 1.237 5 H -0.225 1.225 6 H -0.229 1.229 7 C -1.037 5.037 8 H 0.109 0.891 9 S 2.701 3.299 10 O -1.034 7.034 11 O -1.027 7.027 12 N -1.107 6.107 13 C 0.198 3.802 14 C -0.252 4.252 15 C 0.069 3.931 16 N -0.315 5.315 17 N -0.390 5.390 18 C 0.097 3.903 19 C 0.440 3.560 20 F -0.183 7.183 21 F -0.174 7.174 22 F -0.192 7.192 23 C 0.095 3.905 24 H 0.290 0.710 25 H 0.417 0.583 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.201 0.799 29 H 0.155 0.845 30 H 0.182 0.818 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.958 -14.879 -6.307 22.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.109 4.109 3 Si 0.642 3.358 4 H -0.160 1.160 5 H -0.148 1.148 6 H -0.151 1.151 7 C -1.170 5.170 8 H 0.127 0.873 9 S 2.801 3.199 10 O -1.024 7.024 11 O -1.016 7.016 12 N -0.867 5.867 13 C 0.071 3.929 14 C -0.265 4.265 15 C -0.119 4.119 16 N -0.135 5.135 17 N -0.172 5.172 18 C -0.026 4.026 19 C 0.385 3.615 20 F -0.165 7.165 21 F -0.156 7.156 22 F -0.174 7.174 23 C -0.051 4.051 24 H 0.100 0.900 25 H 0.251 0.749 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.217 0.783 29 H 0.173 0.827 30 H 0.200 0.800 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 16.823 -15.234 -6.247 23.540 hybrid contribution -0.844 0.849 0.666 1.370 sum 15.979 -14.385 -5.580 22.213 Atomic orbital electron populations 1.70018 1.07522 1.30358 1.40772 1.25167 0.95573 1.01477 0.88649 0.87492 0.82833 0.82846 0.82620 1.15984 1.14775 1.15128 1.31042 1.18279 1.01676 1.65961 0.87262 1.00392 0.75554 0.71732 0.72256 1.93435 1.85255 1.77656 1.46081 1.93370 1.84604 1.77564 1.46090 1.55147 1.73689 1.29609 1.28289 1.19453 0.98032 0.87420 0.87948 1.20071 0.98245 0.97122 1.11033 1.24285 0.98629 0.91073 0.97878 1.77507 0.98138 1.21915 1.15930 1.48306 1.14201 1.10583 1.44132 1.23194 0.81405 1.05685 0.92318 1.21029 0.77782 0.75935 0.86766 1.93245 1.73975 1.64484 1.84749 1.93225 1.45597 1.85589 1.91160 1.93215 1.94842 1.57277 1.72055 1.22982 0.95655 0.87332 0.99106 0.89983 0.74907 0.89680 0.90857 0.78267 0.82741 0.80042 0.76866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.08 13.96 21.45 0.30 -48.78 16 2 C 0.11 6.09 5.47 84.66 0.46 6.56 16 3 Si 0.82 40.48 26.54 68.60 1.82 42.30 16 4 H -0.24 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.23 -9.87 7.11 99.48 0.71 -9.16 16 6 H -0.23 -11.53 5.61 99.48 0.56 -10.98 16 7 C -1.04 -56.64 10.26 67.73 0.69 -55.95 16 8 H 0.11 6.05 8.06 -2.91 -0.02 6.03 16 9 S 2.70 127.96 4.24 -56.49 -0.24 127.72 16 10 O -1.03 -53.91 16.02 -128.00 -2.05 -55.96 16 11 O -1.03 -51.13 16.30 -128.00 -2.09 -53.21 16 12 N -1.11 -38.68 5.99 -190.79 -1.14 -39.82 16 13 C 0.20 5.77 6.70 85.63 0.57 6.34 16 14 C -0.25 -5.93 5.50 -20.14 -0.11 -6.04 16 15 C 0.07 1.62 11.96 85.23 1.02 2.64 16 16 N -0.32 -7.53 11.51 -57.02 -0.66 -8.19 16 17 N -0.39 -6.91 3.60 -348.07 -1.25 -8.16 16 18 C 0.10 0.88 6.51 86.38 0.56 1.44 16 19 C 0.44 6.82 3.28 71.98 0.24 7.05 16 20 F -0.18 -3.92 16.28 44.97 0.73 -3.19 16 21 F -0.17 -2.41 17.32 44.97 0.78 -1.63 16 22 F -0.19 -3.92 17.24 44.97 0.78 -3.14 16 23 C 0.09 1.71 11.36 83.54 0.95 2.66 16 24 H 0.29 15.00 8.31 -92.71 -0.77 14.23 16 25 H 0.42 12.92 8.65 -96.74 -0.84 12.08 16 26 H 0.08 2.44 7.75 -2.39 -0.02 2.42 16 27 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.20 3.98 8.06 -2.91 -0.02 3.95 16 29 H 0.15 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.18 0.12 8.07 -2.39 -0.02 0.10 16 31 H 0.21 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -75.65 303.07 1.58 -74.07 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 0.22 Total: 13.29 kcal Atomic # 6 Polarization: -39.68 SS G_CDS: 4.39 Total: -35.29 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -2.75 Total: -104.96 kcal Atomic # 8 Polarization: -105.04 SS G_CDS: -4.14 Total: -109.18 kcal Atomic # 9 Polarization: -10.25 SS G_CDS: 2.29 Total: -7.97 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.82 Total: 42.30 kcal Atomic # 16 Polarization: 127.96 SS G_CDS: -0.24 Total: 127.72 kcal Total: -75.65 1.58 -74.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193001434.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.683 kcal (2) G-P(sol) polarization free energy of solvation -75.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds