Wall clock time and date at job start Tue Mar 31 2020 04:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48503 * 109.47123 * 269.99830 * 3 2 1 5 5 H 1.48496 * 109.47232 * 30.00078 * 3 2 1 6 6 H 1.48501 * 109.46875 * 149.99843 * 3 2 1 7 7 C 1.37874 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00244 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99924 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40556 * 66.46155 * 9 7 2 11 11 O 1.42107 * 106.40089 * 293.53879 * 9 7 2 12 12 N 1.65608 * 107.21687 * 180.02562 * 9 7 2 13 13 C 1.46493 * 119.99916 * 64.72608 * 12 9 7 14 14 C 1.50701 * 109.47227 * 165.00221 * 13 12 9 15 15 C 1.35309 * 126.12964 * 94.68282 * 14 13 12 16 16 C 1.39880 * 107.92096 * 179.90977 * 15 14 13 17 17 N 1.30838 * 108.19868 * 0.36034 * 16 15 14 18 18 N 1.34948 * 126.12357 * 274.99783 * 14 13 12 19 19 C 1.46504 * 126.03972 * 359.94338 * 18 14 13 20 20 C 1.52995 * 109.47352 * 89.99736 * 19 18 14 21 21 F 1.39893 * 109.47226 * 60.00077 * 20 19 18 22 22 F 1.39902 * 109.47265 * 180.02562 * 20 19 18 23 23 F 1.39895 * 109.47111 * 300.00055 * 20 19 18 24 24 H 0.97004 * 120.00200 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99287 * 244.99942 * 12 9 7 26 26 H 1.09002 * 109.47374 * 284.99622 * 13 12 9 27 27 H 1.08994 * 109.47678 * 44.99870 * 13 12 9 28 28 H 1.08005 * 126.04232 * 0.03543 * 15 14 13 29 29 H 1.07995 * 125.89523 * 180.14879 * 16 15 14 30 30 H 1.09002 * 109.47095 * 209.99705 * 19 18 14 31 31 H 1.09005 * 109.46547 * 329.99867 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4509 -2.7949 1.2501 12 7 2.2483 -3.9354 0.0019 13 6 3.1425 -4.1046 1.1500 14 6 3.7977 -5.4599 1.0810 15 6 5.0090 -5.7341 0.5438 16 6 5.2419 -7.1061 0.6851 17 7 4.2041 -7.6378 1.2785 18 7 3.2789 -6.6186 1.5385 19 6 1.9779 -6.7819 2.1921 20 6 0.9091 -7.0698 1.1359 21 9 1.2364 -8.2437 0.4491 22 9 -0.3334 -7.2251 1.7600 23 9 0.8466 -6.0032 0.2328 24 1 -0.4850 0.8401 -0.0004 25 1 2.3177 -4.5328 -0.7591 26 1 3.9086 -3.3294 1.1312 27 1 2.5680 -4.0253 2.0728 28 1 5.6787 -5.0195 0.0885 29 1 6.1243 -7.6356 0.3575 30 1 2.0265 -7.6129 2.8957 31 1 1.7229 -5.8671 2.7272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193002060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:09 Heat of formation + Delta-G solvation = -159.211598 kcal Electronic energy + Delta-G solvation = -25173.766038 eV Core-core repulsion = 20782.946020 eV Total energy + Delta-G solvation = -4390.820018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.09611 -47.64124 -47.54418 -41.38523 -35.38444 -34.88779 -34.01598 -33.99484 -33.11762 -30.24863 -28.65824 -26.18568 -25.42082 -23.81906 -21.31941 -20.29994 -19.13570 -18.54720 -18.48448 -17.83739 -17.53479 -16.73192 -16.04579 -15.42506 -14.95426 -14.79632 -14.48501 -14.38275 -14.24804 -14.15913 -13.98868 -13.88625 -13.69497 -13.66472 -13.36015 -13.19826 -12.67867 -12.22513 -12.17161 -11.99866 -11.29302 -11.24508 -10.85753 -10.63729 -10.55401 -10.33543 -10.24737 -9.55677 -9.28804 -9.13083 -8.72752 -8.59303 -6.74381 -5.37399 1.46830 2.02421 2.29125 2.70558 2.77200 3.04231 3.11588 3.16937 3.64475 3.78292 4.02659 4.11467 4.46577 4.48589 4.60658 4.74944 4.81590 4.93562 5.13761 5.57294 5.62133 5.74791 5.78028 6.11118 6.35297 6.48116 6.65571 6.76511 7.27479 7.51675 7.77928 7.91635 8.84486 10.19823 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.005274 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.799019 B = 5307.821993 C = 6245.325042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.022 5.022 8 H 0.104 0.896 9 S 2.714 3.286 10 O -1.001 7.001 11 O -1.006 7.006 12 N -1.130 6.130 13 C 0.186 3.814 14 C 0.092 3.908 15 C -0.251 4.251 16 C 0.055 3.945 17 N -0.287 5.287 18 N -0.376 5.376 19 C 0.092 3.908 20 C 0.436 3.564 21 F -0.177 7.177 22 F -0.174 7.174 23 F -0.165 7.165 24 H 0.291 0.709 25 H 0.406 0.594 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.156 0.844 29 H 0.188 0.812 30 H 0.139 0.861 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.628 -11.444 4.538 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.086 4.086 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -1.156 5.156 8 H 0.122 0.878 9 S 2.814 3.186 10 O -0.991 6.991 11 O -0.996 6.996 12 N -0.885 5.885 13 C 0.058 3.942 14 C -0.034 4.034 15 C -0.280 4.280 16 C -0.132 4.132 17 N -0.106 5.106 18 N -0.160 5.160 19 C -0.033 4.033 20 C 0.381 3.619 21 F -0.158 7.158 22 F -0.156 7.156 23 F -0.147 7.147 24 H 0.102 0.898 25 H 0.238 0.762 26 H 0.112 0.888 27 H 0.104 0.896 28 H 0.174 0.826 29 H 0.205 0.795 30 H 0.157 0.843 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.810 -12.470 5.203 15.131 hybrid contribution 1.180 1.594 -0.862 2.163 sum 7.990 -10.876 4.341 14.177 Atomic orbital electron populations 1.69897 1.06809 1.30815 1.39865 1.24754 0.94469 1.00874 0.88487 0.86156 0.80129 0.80010 0.79228 1.19175 1.19977 1.18604 1.30550 1.06136 1.11771 1.67111 0.87824 1.00486 0.72044 0.73089 0.72967 1.93384 1.72806 1.87465 1.45481 1.93346 1.72694 1.87505 1.46008 1.56142 1.55002 1.51421 1.25983 1.19655 0.93879 0.89795 0.90888 1.21417 0.94835 0.89216 0.97922 1.21387 0.98472 0.96774 1.11398 1.23948 0.97449 0.94073 0.97736 1.77442 1.00231 1.11409 1.21561 1.48094 1.14117 1.05630 1.48127 1.22782 0.78274 1.09244 0.92962 1.20858 0.82667 0.75049 0.83368 1.93221 1.92342 1.48838 1.81407 1.93224 1.44647 1.95491 1.82207 1.93288 1.96360 1.55575 1.69444 0.89823 0.76166 0.88821 0.89640 0.82648 0.79546 0.84325 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.34 13.19 55.43 0.73 -23.61 16 2 C 0.13 3.59 5.46 -17.82 -0.10 3.49 16 3 Si 0.92 19.92 29.54 -169.99 -5.02 14.90 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -1.02 -26.91 9.71 30.60 0.30 -26.62 16 8 H 0.10 2.44 7.81 -52.49 -0.41 2.03 16 9 S 2.71 69.22 5.02 -107.50 -0.54 68.68 16 10 O -1.00 -29.06 18.02 -57.17 -1.03 -30.09 16 11 O -1.01 -27.64 17.50 -57.17 -1.00 -28.64 16 12 N -1.13 -21.23 4.02 -11.66 -0.05 -21.28 16 13 C 0.19 2.83 6.35 -5.20 -0.03 2.79 16 14 C 0.09 1.25 6.12 -82.27 -0.50 0.74 16 15 C -0.25 -2.96 10.72 -40.01 -0.43 -3.38 16 16 C 0.06 0.61 12.03 -17.36 -0.21 0.41 16 17 N -0.29 -3.81 12.58 30.63 0.39 -3.43 16 18 N -0.38 -4.98 3.47 -57.14 -0.20 -5.17 16 19 C 0.09 1.06 6.21 -4.04 -0.03 1.04 16 20 C 0.44 6.19 3.29 37.16 0.12 6.32 16 21 F -0.18 -2.59 17.24 2.25 0.04 -2.55 16 22 F -0.17 -2.45 17.32 2.25 0.04 -2.41 16 23 F -0.17 -2.89 14.12 2.25 0.03 -2.86 16 24 H 0.29 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.41 7.16 7.88 -34.47 -0.27 6.89 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.09 1.27 6.85 -51.93 -0.36 0.91 16 28 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.19 1.39 8.06 -52.49 -0.42 0.96 16 30 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.14 1.46 7.15 -51.93 -0.37 1.09 16 LS Contribution 303.62 15.07 4.58 4.58 Total: -1.00 -35.72 303.62 -5.15 -40.86 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -2.23 Total: 6.24 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.88 Total: -15.22 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.87 Total: -53.49 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -2.03 Total: -58.73 kcal Atomic # 9 Polarization: -7.92 SS G_CDS: 0.11 Total: -7.81 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 69.22 SS G_CDS: -0.54 Total: 68.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.72 -5.15 -40.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.349 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds