Wall clock time and date at job start Tue Mar 31 2020 04:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99929 * 2 1 4 4 H 1.48503 * 109.47123 * 269.99830 * 3 2 1 5 5 H 1.48496 * 109.47232 * 30.00078 * 3 2 1 6 6 H 1.48501 * 109.46875 * 149.99843 * 3 2 1 7 7 C 1.37874 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00244 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99924 * 0.02562 * 7 2 1 10 10 O 1.42093 * 106.40556 * 66.46155 * 9 7 2 11 11 O 1.42107 * 106.40089 * 293.53879 * 9 7 2 12 12 N 1.65608 * 107.21687 * 180.02562 * 9 7 2 13 13 C 1.46493 * 119.99916 * 64.72608 * 12 9 7 14 14 C 1.50701 * 109.47227 * 165.00221 * 13 12 9 15 15 C 1.35309 * 126.12964 * 94.68282 * 14 13 12 16 16 C 1.39880 * 107.92096 * 179.90977 * 15 14 13 17 17 N 1.30838 * 108.19868 * 0.36034 * 16 15 14 18 18 N 1.34948 * 126.12357 * 274.99783 * 14 13 12 19 19 C 1.46504 * 126.03972 * 359.94338 * 18 14 13 20 20 C 1.52995 * 109.47352 * 89.99736 * 19 18 14 21 21 F 1.39893 * 109.47226 * 60.00077 * 20 19 18 22 22 F 1.39902 * 109.47265 * 180.02562 * 20 19 18 23 23 F 1.39895 * 109.47111 * 300.00055 * 20 19 18 24 24 H 0.97004 * 120.00200 * 0.02562 * 1 2 3 25 25 H 0.97000 * 119.99287 * 244.99942 * 12 9 7 26 26 H 1.09002 * 109.47374 * 284.99622 * 13 12 9 27 27 H 1.08994 * 109.47678 * 44.99870 * 13 12 9 28 28 H 1.08005 * 126.04232 * 0.03543 * 15 14 13 29 29 H 1.07995 * 125.89523 * 180.14879 * 16 15 14 30 30 H 1.09002 * 109.47095 * 209.99705 * 19 18 14 31 31 H 1.09005 * 109.46547 * 329.99867 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 16 1.1235 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2494 11 8 0.4509 -2.7949 1.2501 12 7 2.2483 -3.9354 0.0019 13 6 3.1425 -4.1046 1.1500 14 6 3.7977 -5.4599 1.0810 15 6 5.0090 -5.7341 0.5438 16 6 5.2419 -7.1061 0.6851 17 7 4.2041 -7.6378 1.2785 18 7 3.2789 -6.6186 1.5385 19 6 1.9779 -6.7819 2.1921 20 6 0.9091 -7.0698 1.1359 21 9 1.2364 -8.2437 0.4491 22 9 -0.3334 -7.2251 1.7600 23 9 0.8466 -6.0032 0.2328 24 1 -0.4850 0.8401 -0.0004 25 1 2.3177 -4.5328 -0.7591 26 1 3.9086 -3.3294 1.1312 27 1 2.5680 -4.0253 2.0728 28 1 5.6787 -5.0195 0.0885 29 1 6.1243 -7.6356 0.3575 30 1 2.0265 -7.6129 2.8957 31 1 1.7229 -5.8671 2.7272 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193002060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:08 Heat of formation + Delta-G solvation = -187.555712 kcal Electronic energy + Delta-G solvation = -25174.995131 eV Core-core repulsion = 20782.946020 eV Total energy + Delta-G solvation = -4392.049111 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.049 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.26236 -48.79705 -48.75769 -42.32707 -37.41413 -36.32015 -36.10536 -35.14841 -34.97367 -31.38054 -29.62442 -28.23592 -26.64395 -24.86982 -22.22453 -21.41139 -20.95656 -19.77180 -19.65709 -19.30454 -18.95786 -18.27317 -17.64459 -16.82138 -16.69952 -16.05234 -15.76630 -15.66850 -15.59961 -15.27711 -15.22512 -15.15291 -14.98278 -14.88469 -14.80760 -14.35460 -13.96105 -13.57222 -13.48071 -13.24226 -13.15519 -12.98651 -12.48522 -12.41571 -12.39758 -12.26167 -11.75983 -11.22515 -10.99633 -10.54446 -10.25161 -9.67654 -8.73070 -7.46299 0.19585 0.68078 1.11029 1.38248 1.38839 1.54641 1.66270 1.86215 2.24136 2.58006 2.61187 2.77655 2.99702 3.08663 3.41112 3.54696 3.74800 3.94456 4.06656 4.15761 4.50414 4.53578 4.67356 4.77523 5.00394 5.18040 5.31904 5.63225 5.77086 5.93165 6.26555 6.60261 6.81185 8.23223 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.005274 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.799019 B = 5307.821993 C = 6245.325042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.068 3.932 3 Si 0.990 3.010 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.241 1.241 7 C -1.038 5.038 8 H 0.129 0.871 9 S 2.720 3.280 10 O -1.048 7.048 11 O -1.036 7.036 12 N -1.115 6.115 13 C 0.180 3.820 14 C 0.073 3.927 15 C -0.241 4.241 16 C 0.060 3.940 17 N -0.307 5.307 18 N -0.384 5.384 19 C 0.093 3.907 20 C 0.430 3.570 21 F -0.181 7.181 22 F -0.176 7.176 23 F -0.189 7.189 24 H 0.298 0.702 25 H 0.412 0.588 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.177 0.823 29 H 0.224 0.776 30 H 0.170 0.830 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.432 -11.265 5.023 16.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.163 1.163 7 C -1.172 5.172 8 H 0.147 0.853 9 S 2.821 3.179 10 O -1.038 7.038 11 O -1.025 7.025 12 N -0.874 5.874 13 C 0.053 3.947 14 C -0.052 4.052 15 C -0.271 4.271 16 C -0.127 4.127 17 N -0.127 5.127 18 N -0.168 5.168 19 C -0.032 4.032 20 C 0.374 3.626 21 F -0.162 7.162 22 F -0.158 7.158 23 F -0.171 7.171 24 H 0.108 0.892 25 H 0.246 0.754 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.195 0.805 29 H 0.240 0.760 30 H 0.188 0.812 31 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.613 -12.319 5.693 16.630 hybrid contribution 0.356 1.398 -1.025 1.770 sum 9.969 -10.920 4.669 15.506 Atomic orbital electron populations 1.70004 1.08912 1.32319 1.41526 1.26043 0.95326 1.05509 0.87562 0.85121 0.79390 0.74720 0.79912 1.18280 1.19070 1.16332 1.30923 1.07547 1.12133 1.66550 0.85333 0.99923 0.72550 0.73824 0.71575 1.93313 1.74868 1.88372 1.47227 1.93296 1.74225 1.88186 1.46838 1.55479 1.54644 1.49827 1.27484 1.19873 0.93737 0.91863 0.89217 1.21252 0.95707 0.88581 0.99705 1.21746 0.97876 0.97583 1.09870 1.24587 0.97822 0.93965 0.96319 1.77431 1.00974 1.11882 1.22373 1.48210 1.14454 1.05523 1.48594 1.22988 0.76970 1.11056 0.92162 1.21367 0.83415 0.74271 0.83550 1.93204 1.92357 1.48975 1.81696 1.93212 1.45071 1.95443 1.82071 1.93233 1.96523 1.56798 1.70548 0.89193 0.75379 0.86804 0.89748 0.80522 0.75982 0.81215 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.54 13.19 21.45 0.28 -52.26 16 2 C 0.07 3.68 5.46 84.65 0.46 4.14 16 3 Si 0.99 39.53 29.54 68.60 2.03 41.56 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 6 H -0.24 -8.69 7.11 99.48 0.71 -7.98 16 7 C -1.04 -54.10 9.71 67.73 0.66 -53.44 16 8 H 0.13 5.80 7.81 -2.91 -0.02 5.78 16 9 S 2.72 140.97 5.02 -56.49 -0.28 140.69 16 10 O -1.05 -62.76 18.02 -128.00 -2.31 -65.07 16 11 O -1.04 -58.35 17.50 -128.00 -2.24 -60.59 16 12 N -1.12 -41.57 4.02 -190.80 -0.77 -42.34 16 13 C 0.18 5.23 6.35 85.63 0.54 5.77 16 14 C 0.07 1.84 6.12 41.40 0.25 2.09 16 15 C -0.24 -4.94 10.72 21.99 0.24 -4.70 16 16 C 0.06 1.14 12.03 85.24 1.03 2.17 16 17 N -0.31 -7.44 12.58 -57.02 -0.72 -8.16 16 18 N -0.38 -9.50 3.47 -334.69 -1.16 -10.66 16 19 C 0.09 2.03 6.21 86.38 0.54 2.56 16 20 C 0.43 12.15 3.29 71.98 0.24 12.39 16 21 F -0.18 -5.24 17.24 44.97 0.78 -4.47 16 22 F -0.18 -4.99 17.32 44.97 0.78 -4.22 16 23 F -0.19 -6.75 14.12 44.97 0.63 -6.12 16 24 H 0.30 15.73 8.31 -92.71 -0.77 14.96 16 25 H 0.41 14.52 7.88 -96.75 -0.76 13.76 16 26 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.08 2.45 6.85 -2.39 -0.02 2.44 16 28 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 29 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.15 3.00 7.15 -2.38 -0.02 2.98 16 Total: -1.00 -78.38 303.62 1.42 -76.96 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.45 Total: 23.71 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 3.95 Total: -29.03 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -2.36 Total: -113.42 kcal Atomic # 8 Polarization: -121.12 SS G_CDS: -4.55 Total: -125.67 kcal Atomic # 9 Polarization: -16.99 SS G_CDS: 2.19 Total: -14.80 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Atomic # 16 Polarization: 140.97 SS G_CDS: -0.28 Total: 140.69 kcal Total: -78.38 1.42 -76.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193002060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.593 kcal (2) G-P(sol) polarization free energy of solvation -78.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds