Wall clock time and date at job start Tue Mar 31 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38892 * 120.00057 * 180.27625 * 4 2 1 6 6 N 1.29492 * 125.26030 * 179.72382 * 5 4 2 7 7 C 1.33677 * 115.67509 * 179.78848 * 6 5 4 8 8 C 1.47035 * 122.52115 * 180.23679 * 7 6 5 9 9 O 1.21568 * 120.00232 * 180.29014 * 8 7 6 10 10 O 1.34817 * 119.99988 * 0.28551 * 8 7 6 11 11 C 1.45197 * 117.00440 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47379 * 180.02562 * 11 10 8 13 13 O 1.21290 * 119.99904 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99818 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99847 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00163 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99916 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00120 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47135 * 59.99658 * 19 17 15 21 21 H 1.48499 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47041 * 299.99460 * 19 17 15 23 23 C 1.34980 * 114.96509 * 0.50268 * 7 6 5 24 24 S 1.70982 * 109.19081 * 359.73668 * 23 7 6 25 25 H 1.08998 * 109.46721 * 89.99856 * 1 2 3 26 26 H 1.08994 * 109.46951 * 210.00396 * 1 2 3 27 27 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 28 28 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 29 29 H 1.09003 * 109.47387 * 300.00026 * 11 10 8 30 30 H 1.09001 * 109.46949 * 60.00211 * 11 10 8 31 31 H 0.97004 * 120.00461 * 359.97438 * 14 12 11 32 32 H 0.97000 * 120.00328 * 180.02562 * 18 17 15 33 33 H 1.08001 * 125.40623 * 179.76467 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5698 -1.1672 0.0115 6 7 4.3173 -2.2245 0.0224 7 6 5.6354 -2.0020 0.0218 8 6 6.6213 -3.0929 0.0281 9 8 7.8099 -2.8380 0.0327 10 8 6.2070 -4.3758 0.0290 11 6 7.2355 -5.4007 0.0359 12 6 6.5884 -6.7618 0.0353 13 8 5.3794 -6.8585 0.0291 14 7 7.3533 -7.8714 0.0416 15 6 6.7646 -9.1097 0.0405 16 1 5.6880 -9.1958 0.0349 17 6 7.5530 -10.2538 0.0475 18 7 8.8630 -10.1490 0.0548 19 14 6.7510 -11.9408 0.0467 20 1 5.9132 -12.0900 -1.1701 21 1 7.8029 -12.9890 0.0545 22 1 5.8995 -12.0847 1.2548 23 6 5.9935 -0.7005 0.0207 24 16 4.5856 0.2697 0.0129 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6959 -2.0073 0.0057 29 1 7.8597 -5.2952 -0.8514 30 1 7.8514 -5.2913 0.9286 31 1 8.3202 -7.7941 0.0462 32 1 9.4134 -10.9476 0.0594 33 1 7.0082 -0.3307 0.0237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318330486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:03 Heat of formation + Delta-G solvation = -101.479943 kcal Electronic energy + Delta-G solvation = -22127.250475 eV Core-core repulsion = 18280.790631 eV Total energy + Delta-G solvation = -3846.459845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92785 -40.40844 -39.10973 -38.00475 -36.07770 -35.34959 -33.95405 -31.36482 -31.29325 -29.64231 -28.57716 -25.95857 -24.46691 -23.06039 -21.85610 -20.11643 -19.52906 -18.96506 -18.03973 -17.69636 -17.25497 -16.58876 -16.53050 -16.25582 -16.17772 -15.47945 -14.73514 -14.72615 -14.51537 -13.97482 -13.81673 -13.64850 -13.26765 -12.96482 -12.90020 -12.27778 -12.27476 -11.94075 -11.58989 -11.45279 -11.08843 -10.73440 -10.58422 -10.46567 -10.35994 -10.26072 -10.11047 -9.67495 -9.55821 -8.66447 -8.46665 -8.04252 -6.46341 -3.88230 0.24185 0.68275 1.37376 1.38333 2.10739 2.13711 2.83865 3.13034 3.18034 3.24565 3.29589 3.78782 3.99373 4.13024 4.25141 4.61858 4.77926 4.81989 4.93778 5.11861 5.18507 5.22896 5.30440 5.55763 5.71707 5.73963 6.09470 6.35857 6.55343 7.23645 7.25183 7.50926 7.86520 7.99545 8.53134 9.10840 9.43510 9.94121 10.71004 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.002549 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.985159 B =10981.484923 C =12156.021115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.513 3.487 3 O -0.514 6.514 4 N -0.620 5.620 5 C 0.247 3.753 6 N -0.448 5.448 7 C 0.053 3.947 8 C 0.540 3.460 9 O -0.505 6.505 10 O -0.302 6.302 11 C 0.058 3.942 12 C 0.440 3.560 13 O -0.572 6.572 14 N -0.554 5.554 15 C -0.302 4.302 16 H 0.105 0.895 17 C 0.024 3.976 18 N -0.898 5.898 19 Si 0.935 3.065 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.257 4.257 24 S 0.280 5.720 25 H 0.105 0.895 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.430 0.570 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.971 21.952 -0.134 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.301 3.699 3 O -0.389 6.389 4 N -0.271 5.271 5 C -0.123 4.123 6 N -0.170 5.170 7 C -0.080 4.080 8 C 0.381 3.619 9 O -0.394 6.394 10 O -0.215 6.215 11 C -0.020 4.020 12 C 0.225 3.775 13 O -0.455 6.455 14 N -0.192 5.192 15 C -0.431 4.431 16 H 0.123 0.877 17 C -0.178 4.178 18 N -0.539 5.539 19 Si 0.761 3.239 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 C -0.400 4.400 24 S 0.532 5.468 25 H 0.124 0.876 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.270 0.730 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.084 0.916 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.386 23.066 -0.129 26.181 hybrid contribution 0.949 -2.193 -0.002 2.389 sum -11.438 20.873 -0.131 23.802 Atomic orbital electron populations 1.21860 0.88411 1.06169 1.05966 1.21375 0.91768 0.81999 0.74742 1.90678 1.69586 1.30682 1.47922 1.42961 1.01490 1.11806 1.70884 1.24359 0.90157 0.93334 1.04436 1.67155 1.02941 1.28681 1.18206 1.18737 0.88225 0.91215 1.09863 1.19943 0.86241 0.82728 0.73002 1.90870 1.16854 1.84986 1.46737 1.86743 1.38767 1.13762 1.82251 1.22832 0.89175 0.86386 1.03619 1.19291 0.87986 0.84375 0.85850 1.90571 1.13712 1.86384 1.54879 1.41689 1.08966 1.04410 1.64120 1.19673 0.94115 0.81104 1.48172 0.87701 1.25301 0.95317 1.00185 0.96990 1.69607 1.03557 1.30942 1.49803 0.85859 0.78386 0.80479 0.79159 1.19787 1.20896 1.19781 1.27000 1.08360 0.97297 1.07304 1.84860 0.90547 1.05377 1.65983 0.87636 0.89043 0.87667 0.72998 0.89370 0.89366 0.77158 0.91621 0.78862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 10.30 36.01 0.37 -0.02 16 2 C 0.51 3.60 7.90 -10.98 -0.09 3.51 16 3 O -0.51 -5.22 14.61 5.55 0.08 -5.14 16 4 N -0.62 -5.09 5.40 -11.92 -0.06 -5.16 16 5 C 0.25 2.94 8.36 -87.56 -0.73 2.21 16 6 N -0.45 -6.85 10.61 -10.54 -0.11 -6.97 16 7 C 0.05 0.82 6.66 -84.66 -0.56 0.26 16 8 C 0.54 9.77 7.93 34.30 0.27 10.05 16 9 O -0.51 -9.34 16.45 -19.32 -0.32 -9.66 16 10 O -0.30 -6.27 9.67 -47.50 -0.46 -6.73 16 11 C 0.06 1.16 5.96 36.01 0.21 1.37 16 12 C 0.44 11.00 7.86 -10.99 -0.09 10.91 16 13 O -0.57 -16.44 16.08 -14.11 -0.23 -16.66 16 14 N -0.55 -14.33 5.29 -10.96 -0.06 -14.39 16 15 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 16 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 17 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 18 N -0.90 -24.40 13.05 55.50 0.72 -23.67 16 19 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C -0.26 -3.09 10.55 29.58 0.31 -2.77 16 24 S 0.28 2.90 20.29 -107.50 -2.18 0.72 16 25 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 27 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.43 2.59 8.82 -40.82 -0.36 2.23 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 30 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 31 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 32 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 33 H 0.19 1.95 7.99 -52.49 -0.42 1.53 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -36.53 323.89 -6.02 -42.55 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -2.73 Total: 6.82 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -0.54 Total: 17.48 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.49 Total: -50.19 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.92 Total: -38.19 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.18 Total: 0.72 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.53 -6.02 -42.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318330486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.933 kcal (2) G-P(sol) polarization free energy of solvation -36.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds