Wall clock time and date at job start Tue Mar 31 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.38892 * 120.00057 * 180.27625 * 4 2 1 6 6 N 1.29492 * 125.26030 * 179.72382 * 5 4 2 7 7 C 1.33677 * 115.67509 * 179.78848 * 6 5 4 8 8 C 1.47035 * 122.52115 * 180.23679 * 7 6 5 9 9 O 1.21568 * 120.00232 * 180.29014 * 8 7 6 10 10 O 1.34817 * 119.99988 * 0.28551 * 8 7 6 11 11 C 1.45197 * 117.00440 * 180.02562 * 10 8 7 12 12 C 1.50703 * 109.47379 * 180.02562 * 11 10 8 13 13 O 1.21290 * 119.99904 * 0.02562 * 12 11 10 14 14 N 1.34773 * 119.99796 * 180.02562 * 12 11 10 15 15 C 1.37103 * 119.99818 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99847 * 359.97438 * 15 14 12 17 17 C 1.38945 * 120.00163 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99916 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00120 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.47135 * 59.99658 * 19 17 15 21 21 H 1.48499 * 109.47258 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47041 * 299.99460 * 19 17 15 23 23 C 1.34980 * 114.96509 * 0.50268 * 7 6 5 24 24 S 1.70982 * 109.19081 * 359.73668 * 23 7 6 25 25 H 1.08998 * 109.46721 * 89.99856 * 1 2 3 26 26 H 1.08994 * 109.46951 * 210.00396 * 1 2 3 27 27 H 1.09001 * 109.46926 * 330.00454 * 1 2 3 28 28 H 0.97000 * 120.00317 * 0.28382 * 4 2 1 29 29 H 1.09003 * 109.47387 * 300.00026 * 11 10 8 30 30 H 1.09001 * 109.46949 * 60.00211 * 11 10 8 31 31 H 0.97004 * 120.00461 * 359.97438 * 14 12 11 32 32 H 0.97000 * 120.00328 * 180.02562 * 18 17 15 33 33 H 1.08001 * 125.40623 * 179.76467 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 3.5698 -1.1672 0.0115 6 7 4.3173 -2.2245 0.0224 7 6 5.6354 -2.0020 0.0218 8 6 6.6213 -3.0929 0.0281 9 8 7.8099 -2.8380 0.0327 10 8 6.2070 -4.3758 0.0290 11 6 7.2355 -5.4007 0.0359 12 6 6.5884 -6.7618 0.0353 13 8 5.3794 -6.8585 0.0291 14 7 7.3533 -7.8714 0.0416 15 6 6.7646 -9.1097 0.0405 16 1 5.6880 -9.1958 0.0349 17 6 7.5530 -10.2538 0.0475 18 7 8.8630 -10.1490 0.0548 19 14 6.7510 -11.9408 0.0467 20 1 5.9132 -12.0900 -1.1701 21 1 7.8029 -12.9890 0.0545 22 1 5.8995 -12.0847 1.2548 23 6 5.9935 -0.7005 0.0207 24 16 4.5856 0.2697 0.0129 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.6959 -2.0073 0.0057 29 1 7.8597 -5.2952 -0.8514 30 1 7.8514 -5.2913 0.9286 31 1 8.3202 -7.7941 0.0462 32 1 9.4134 -10.9476 0.0594 33 1 7.0082 -0.3307 0.0237 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318330486.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:03 Heat of formation + Delta-G solvation = -128.809900 kcal Electronic energy + Delta-G solvation = -22128.435591 eV Core-core repulsion = 18280.790631 eV Total energy + Delta-G solvation = -3847.644961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98781 -41.37176 -40.37389 -39.77600 -37.58616 -36.10208 -36.04180 -33.42885 -31.99142 -30.41439 -30.12212 -27.31558 -26.20837 -24.07347 -22.58692 -21.48034 -21.28990 -20.09845 -19.90842 -18.71344 -18.04409 -17.94127 -17.86219 -17.53254 -17.15217 -17.00693 -16.49923 -15.95870 -15.82024 -15.28966 -15.23959 -14.83446 -14.45838 -13.97683 -13.72504 -13.56062 -13.41012 -13.16574 -13.14490 -12.93901 -12.49551 -12.28592 -12.13352 -12.04325 -11.91698 -11.58035 -11.30999 -11.07262 -10.58482 -10.52726 -10.12757 -9.55089 -8.52601 -6.03556 -0.71262 -0.17962 0.37105 0.40520 1.33115 1.34608 1.37441 1.42986 1.52428 1.60519 1.85660 1.97896 2.29643 2.93470 3.12505 3.26447 3.66876 3.83238 3.98431 4.07649 4.12637 4.20501 4.40190 4.50146 4.66129 4.85062 5.09838 5.12471 5.36027 5.70034 5.87854 6.27852 6.46892 6.61757 6.66361 7.01924 7.38495 7.92579 8.64302 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.023426 B = 0.002549 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.985159 B =10981.484923 C =12156.021115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.513 3.487 3 O -0.546 6.546 4 N -0.615 5.615 5 C 0.238 3.762 6 N -0.489 5.489 7 C 0.017 3.983 8 C 0.540 3.460 9 O -0.516 6.516 10 O -0.327 6.327 11 C 0.068 3.932 12 C 0.437 3.563 13 O -0.616 6.616 14 N -0.557 5.557 15 C -0.339 4.339 16 H 0.084 0.916 17 C -0.009 4.009 18 N -0.915 5.915 19 Si 0.999 3.001 20 H -0.270 1.270 21 H -0.268 1.268 22 H -0.269 1.269 23 C -0.243 4.243 24 S 0.338 5.662 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.439 0.561 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.400 0.600 32 H 0.281 0.719 33 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.765 22.843 -0.155 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.303 3.697 3 O -0.423 6.423 4 N -0.268 5.268 5 C -0.132 4.132 6 N -0.212 5.212 7 C -0.115 4.115 8 C 0.383 3.617 9 O -0.406 6.406 10 O -0.241 6.241 11 C -0.010 4.010 12 C 0.223 3.777 13 O -0.503 6.503 14 N -0.194 5.194 15 C -0.468 4.468 16 H 0.102 0.898 17 C -0.210 4.210 18 N -0.555 5.555 19 Si 0.822 3.178 20 H -0.195 1.195 21 H -0.193 1.193 22 H -0.195 1.195 23 C -0.386 4.386 24 S 0.591 5.409 25 H 0.142 0.858 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.281 0.719 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.235 0.765 32 H 0.091 0.909 33 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -13.171 23.970 -0.149 27.350 hybrid contribution 1.140 -2.315 0.003 2.580 sum -12.031 21.655 -0.146 24.773 Atomic orbital electron populations 1.21968 0.84379 1.07633 1.07512 1.22344 0.93380 0.80884 0.73061 1.90647 1.70466 1.31688 1.49511 1.43236 1.00109 1.12963 1.70497 1.24705 0.91652 0.93532 1.03339 1.67079 1.03255 1.30630 1.20207 1.18576 0.88286 0.91268 1.13402 1.20364 0.86893 0.82166 0.72312 1.90841 1.17289 1.84890 1.47546 1.86732 1.39379 1.15012 1.82983 1.22643 0.88765 0.83875 1.05681 1.20039 0.87509 0.85877 0.84227 1.90531 1.15742 1.87380 1.56617 1.41719 1.09247 1.04389 1.64075 1.19692 0.93616 0.82691 1.50824 0.89812 1.26148 0.95852 1.03372 0.95593 1.69668 1.04441 1.32358 1.49053 0.84900 0.77824 0.75929 0.79159 1.19457 1.19280 1.19452 1.27333 1.10242 0.96463 1.04609 1.84744 0.88528 1.03320 1.64327 0.85812 0.86866 0.86876 0.71920 0.87188 0.87185 0.76502 0.90914 0.77118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.31 10.30 71.24 0.73 0.43 16 2 C 0.51 6.27 7.90 87.66 0.69 6.96 16 3 O -0.55 -10.20 14.61 -3.04 -0.04 -10.24 16 4 N -0.62 -9.42 5.40 -310.00 -1.67 -11.10 16 5 C 0.24 5.52 8.36 179.28 1.50 7.02 16 6 N -0.49 -15.11 10.61 -187.25 -1.99 -17.10 16 7 C 0.02 0.54 6.66 40.42 0.27 0.81 16 8 C 0.54 19.76 7.93 70.13 0.56 20.32 16 9 O -0.52 -18.93 16.45 19.61 0.32 -18.61 16 10 O -0.33 -13.86 9.67 -50.90 -0.49 -14.35 16 11 C 0.07 2.74 5.96 71.24 0.42 3.17 16 12 C 0.44 22.39 7.86 87.66 0.69 23.08 16 13 O -0.62 -36.74 16.08 15.74 0.25 -36.49 16 14 N -0.56 -29.41 5.29 -306.98 -1.62 -31.04 16 15 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 16 H 0.08 5.07 7.16 -2.91 -0.02 5.05 16 17 C -0.01 -0.48 5.50 84.93 0.47 -0.01 16 18 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 19 Si 1.00 42.50 29.55 68.60 2.03 44.52 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C -0.24 -5.59 10.55 67.07 0.71 -4.88 16 24 S 0.34 6.50 20.29 -56.49 -1.15 5.36 16 25 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 26 H 0.11 -0.22 8.14 -2.39 -0.02 -0.24 16 27 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 28 H 0.44 4.87 8.82 -92.71 -0.82 4.05 16 29 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 30 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.40 19.84 7.90 -92.71 -0.73 19.11 16 32 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 33 H 0.21 3.89 7.99 -2.91 -0.02 3.87 16 Total: -1.00 -80.29 323.89 2.43 -77.86 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -0.34 Total: 21.86 kcal Atomic # 6 Polarization: 31.42 SS G_CDS: 6.85 Total: 38.27 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -5.00 Total: -108.18 kcal Atomic # 8 Polarization: -79.73 SS G_CDS: 0.04 Total: -79.69 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 6.50 SS G_CDS: -1.15 Total: 5.36 kcal Total: -80.29 2.43 -77.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318330486.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.951 kcal (2) G-P(sol) polarization free energy of solvation -80.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds