Wall clock time and date at job start Tue Mar 31 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65596 * 120.00184 * 2 1 4 4 O 1.42096 * 106.40352 * 311.45771 * 3 2 1 5 5 O 1.42104 * 106.40178 * 178.54190 * 3 2 1 6 6 C 1.76195 * 107.22015 * 65.00043 * 3 2 1 7 7 C 1.34176 * 125.42970 * 89.99908 * 6 3 2 8 8 C 1.47029 * 105.96154 * 180.02562 * 7 6 3 9 9 C 1.47291 * 127.19408 * 179.97438 * 8 7 6 10 10 O 1.21648 * 120.00082 * 186.19596 * 9 8 7 11 11 N 1.34778 * 120.00347 * 6.19342 * 9 8 7 12 12 C 1.36960 * 120.00007 * 184.70239 * 11 9 8 13 13 H 1.08000 * 120.00773 * 328.24449 * 12 11 9 14 14 C 1.38980 * 119.99882 * 148.24001 * 12 11 9 15 15 N 1.31412 * 119.99906 * 341.24332 * 14 12 11 16 16 Si 1.86796 * 120.00327 * 161.24425 * 14 12 11 17 17 H 1.48500 * 109.47068 * 60.00064 * 16 14 12 18 18 H 1.48498 * 109.47680 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47274 * 300.00332 * 16 14 12 20 20 C 1.46495 * 119.99745 * 4.71018 * 11 9 8 21 21 C 1.47205 * 109.47130 * 274.48252 * 20 11 9 22 22 N 4.90979 * 116.33018 * 97.44143 * 2 1 3 23 23 C 1.36503 * 105.60592 * 0.02562 * 8 7 6 24 24 O 1.33667 * 108.37567 * 359.97438 * 23 8 7 25 25 H 1.09002 * 109.46922 * 300.00238 * 1 2 3 26 26 H 1.08999 * 109.47340 * 59.99442 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99657 * 179.97438 * 2 1 3 29 29 H 1.08005 * 127.01542 * 359.75958 * 7 6 3 30 30 H 0.97005 * 119.99957 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47562 * 34.48211 * 20 11 9 32 32 H 1.09000 * 109.47386 * 154.48331 * 20 11 9 33 33 H 1.07995 * 125.80909 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7121 2.2329 -1.0216 5 8 3.6738 1.1001 0.0347 6 6 1.9379 2.2414 1.5253 7 6 2.6392 2.1024 2.6607 8 6 1.9749 2.9592 3.6538 9 6 2.3617 3.1556 5.0614 10 8 1.6520 3.8099 5.8016 11 7 3.5020 2.6104 5.5293 12 6 3.8138 2.7110 6.8591 13 1 3.5022 3.5778 7.4229 14 6 4.5313 1.6974 7.4833 15 7 4.5952 0.5045 6.9357 16 14 5.4047 2.0307 9.1005 17 1 4.4117 2.4489 10.1223 18 1 6.0923 0.7957 9.5555 19 1 6.4040 3.1125 8.9096 20 6 4.4080 1.9103 4.6154 21 6 3.9760 0.5103 4.4730 22 7 3.6427 -0.5699 4.3634 23 6 0.9239 3.5336 2.9989 24 8 0.9222 3.0929 1.7369 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 3.5110 1.4837 2.8149 30 1 5.0963 -0.2028 7.3711 31 1 4.3886 2.3974 3.6405 32 1 5.4214 1.9388 5.0157 33 1 0.2147 4.2261 3.4274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319495756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:57 Heat of formation + Delta-G solvation = -24.892492 kcal Electronic energy + Delta-G solvation = -24192.458904 eV Core-core repulsion = 20349.320140 eV Total energy + Delta-G solvation = -3843.138764 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.47878 -38.84791 -37.42726 -36.08131 -36.05279 -35.22824 -34.41872 -33.09983 -31.71715 -30.01933 -27.74936 -26.23401 -25.58653 -22.71552 -22.36808 -20.61706 -19.30280 -18.11319 -17.87874 -17.68628 -16.66824 -16.60139 -16.27104 -15.97353 -15.89493 -14.89236 -14.81355 -14.27745 -14.04282 -13.95988 -13.54298 -13.08987 -12.98368 -12.80057 -12.34300 -12.23302 -12.15509 -11.97220 -11.85353 -11.79817 -11.56882 -11.39231 -11.16242 -10.76689 -10.67552 -10.50213 -9.96543 -9.76184 -9.33663 -9.04267 -8.93993 -8.08089 -6.61598 -4.23084 0.09043 1.17294 1.86921 2.69038 3.04764 3.09227 3.14929 3.16900 3.48409 3.52671 3.77756 4.00125 4.02929 4.39638 4.56586 4.78318 4.79805 4.85908 4.95976 5.07481 5.24080 5.26737 5.50090 5.52939 5.59195 5.81047 5.89403 6.16934 6.20190 6.65138 6.80436 7.33911 7.83213 8.12187 8.63121 8.82023 9.00500 9.56491 10.43187 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.004529 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.243526 B = 6181.095146 C = 6809.741823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.113 6.113 3 S 2.728 3.272 4 O -0.941 6.941 5 O -0.937 6.937 6 C -0.590 4.590 7 C -0.077 4.077 8 C -0.222 4.222 9 C 0.525 3.475 10 O -0.568 6.568 11 N -0.425 5.425 12 C -0.319 4.319 13 H 0.107 0.893 14 C 0.038 3.962 15 N -0.865 5.865 16 Si 0.932 3.068 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.269 1.269 20 C 0.201 3.799 21 C 0.235 3.765 22 N -0.452 5.452 23 C 0.069 3.931 24 O -0.126 6.126 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.423 0.577 29 H 0.182 0.818 30 H 0.277 0.723 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 0.158 -12.474 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.874 5.874 3 S 2.810 3.190 4 O -0.931 6.931 5 O -0.927 6.927 6 C -0.719 4.719 7 C -0.099 4.099 8 C -0.228 4.228 9 C 0.314 3.686 10 O -0.452 6.452 11 N -0.144 5.144 12 C -0.446 4.446 13 H 0.125 0.875 14 C -0.168 4.168 15 N -0.501 5.501 16 Si 0.758 3.242 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.194 1.194 20 C 0.073 3.927 21 C -0.083 4.083 22 N -0.133 5.133 23 C -0.005 4.005 24 O -0.020 6.020 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.257 0.743 29 H 0.199 0.801 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.219 -0.733 -13.032 13.718 hybrid contribution 0.679 -0.135 2.050 2.164 sum -3.539 -0.868 -10.983 11.572 Atomic orbital electron populations 1.21541 0.77974 1.04427 1.02385 1.55292 1.16620 1.24294 1.91228 1.01398 0.72935 0.72548 0.72150 1.93594 1.78636 1.68345 1.52549 1.93669 1.29681 1.83228 1.86151 1.35457 1.00767 1.12891 1.22742 1.24016 0.98832 0.96572 0.90468 1.22154 0.99866 1.03789 0.96954 1.17062 0.81615 0.85303 0.84590 1.90663 1.52423 1.43749 1.58316 1.43290 1.15903 1.47098 1.08074 1.19585 1.35494 1.05549 0.83990 0.87539 1.25498 0.97909 0.93620 0.99806 1.69708 1.38688 1.00933 1.40808 0.85895 0.79504 0.77840 0.80970 1.19568 1.20894 1.19435 1.19265 0.96770 0.81601 0.95015 1.28894 0.93519 0.95069 0.90777 1.80862 1.08429 1.12243 1.11759 1.24898 0.98162 0.96668 0.80806 1.83891 1.41512 1.47533 1.29075 0.91894 0.91012 0.89652 0.74259 0.80117 0.91234 0.88506 0.86461 0.75646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 11.14 59.85 0.67 1.34 16 2 N -1.11 -10.89 6.19 -16.63 -0.10 -10.99 16 3 S 2.73 35.51 5.89 -107.50 -0.63 34.87 16 4 O -0.94 -13.99 17.74 -57.28 -1.02 -15.01 16 5 O -0.94 -14.08 17.81 -57.17 -1.02 -15.10 16 6 C -0.59 -8.91 7.29 29.30 0.21 -8.69 16 7 C -0.08 -1.32 7.89 -37.45 -0.30 -1.62 16 8 C -0.22 -4.18 6.07 -103.28 -0.63 -4.81 16 9 C 0.52 12.07 7.57 -12.58 -0.10 11.97 16 10 O -0.57 -14.57 16.71 5.23 0.09 -14.48 16 11 N -0.42 -9.92 2.55 -119.20 -0.30 -10.22 16 12 C -0.32 -8.03 9.04 -14.99 -0.14 -8.17 16 13 H 0.11 2.77 7.59 -52.49 -0.40 2.37 16 14 C 0.04 0.91 4.89 -17.46 -0.09 0.83 16 15 N -0.87 -21.77 9.84 55.50 0.55 -21.23 16 16 Si 0.93 19.14 29.59 -169.99 -5.03 14.11 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 C 0.20 4.01 4.72 -6.83 -0.03 3.98 16 21 C 0.24 5.13 9.93 -20.77 -0.21 4.92 16 22 N -0.45 -10.40 18.54 42.14 0.78 -9.62 16 23 C 0.07 1.06 11.91 30.11 0.36 1.42 16 24 O -0.13 -1.87 10.52 7.61 0.08 -1.79 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.42 3.33 8.96 -34.47 -0.31 3.02 16 29 H 0.18 3.09 3.62 -52.48 -0.19 2.90 16 30 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.10 1.60 4.97 -51.93 -0.26 1.35 16 32 H 0.12 2.25 7.44 -51.93 -0.39 1.87 16 33 H 0.23 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 310.49 15.07 4.68 4.68 Total: -1.00 -34.17 310.49 -4.53 -38.70 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -2.37 Total: 4.91 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.24 Total: 1.16 kcal Atomic # 7 Polarization: -52.98 SS G_CDS: 0.92 Total: -52.06 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.87 Total: -46.37 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: 35.51 SS G_CDS: -0.63 Total: 34.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -34.17 -4.53 -38.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319495756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.808 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds