Wall clock time and date at job start Tue Mar 31 2020 04:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65596 * 120.00184 * 2 1 4 4 O 1.42096 * 106.40352 * 311.45771 * 3 2 1 5 5 O 1.42104 * 106.40178 * 178.54190 * 3 2 1 6 6 C 1.76195 * 107.22015 * 65.00043 * 3 2 1 7 7 C 1.34176 * 125.42970 * 89.99908 * 6 3 2 8 8 C 1.47029 * 105.96154 * 180.02562 * 7 6 3 9 9 C 1.47291 * 127.19408 * 179.97438 * 8 7 6 10 10 O 1.21648 * 120.00082 * 186.19596 * 9 8 7 11 11 N 1.34778 * 120.00347 * 6.19342 * 9 8 7 12 12 C 1.36960 * 120.00007 * 184.70239 * 11 9 8 13 13 H 1.08000 * 120.00773 * 328.24449 * 12 11 9 14 14 C 1.38980 * 119.99882 * 148.24001 * 12 11 9 15 15 N 1.31412 * 119.99906 * 341.24332 * 14 12 11 16 16 Si 1.86796 * 120.00327 * 161.24425 * 14 12 11 17 17 H 1.48500 * 109.47068 * 60.00064 * 16 14 12 18 18 H 1.48498 * 109.47680 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47274 * 300.00332 * 16 14 12 20 20 C 1.46495 * 119.99745 * 4.71018 * 11 9 8 21 21 C 1.47205 * 109.47130 * 274.48252 * 20 11 9 22 22 N 4.90979 * 116.33018 * 97.44143 * 2 1 3 23 23 C 1.36503 * 105.60592 * 0.02562 * 8 7 6 24 24 O 1.33667 * 108.37567 * 359.97438 * 23 8 7 25 25 H 1.09002 * 109.46922 * 300.00238 * 1 2 3 26 26 H 1.08999 * 109.47340 * 59.99442 * 1 2 3 27 27 H 1.09001 * 109.47430 * 180.02562 * 1 2 3 28 28 H 0.97003 * 119.99657 * 179.97438 * 2 1 3 29 29 H 1.08005 * 127.01542 * 359.75958 * 7 6 3 30 30 H 0.97005 * 119.99957 * 179.97438 * 15 14 12 31 31 H 1.09002 * 109.47562 * 34.48211 * 20 11 9 32 32 H 1.09000 * 109.47386 * 154.48331 * 20 11 9 33 33 H 1.07995 * 125.80909 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7121 2.2329 -1.0216 5 8 3.6738 1.1001 0.0347 6 6 1.9379 2.2414 1.5253 7 6 2.6392 2.1024 2.6607 8 6 1.9749 2.9592 3.6538 9 6 2.3617 3.1556 5.0614 10 8 1.6520 3.8099 5.8016 11 7 3.5020 2.6104 5.5293 12 6 3.8138 2.7110 6.8591 13 1 3.5022 3.5778 7.4229 14 6 4.5313 1.6974 7.4833 15 7 4.5952 0.5045 6.9357 16 14 5.4047 2.0307 9.1005 17 1 4.4117 2.4489 10.1223 18 1 6.0923 0.7957 9.5555 19 1 6.4040 3.1125 8.9096 20 6 4.4080 1.9103 4.6154 21 6 3.9760 0.5103 4.4730 22 7 3.6427 -0.5699 4.3634 23 6 0.9239 3.5336 2.9989 24 8 0.9222 3.0929 1.7369 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 3.5110 1.4837 2.8149 30 1 5.0963 -0.2028 7.3711 31 1 4.3886 2.3974 3.6405 32 1 5.4214 1.9388 5.0157 33 1 0.2147 4.2261 3.4274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319495756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:57 Heat of formation + Delta-G solvation = -52.427070 kcal Electronic energy + Delta-G solvation = -24193.652893 eV Core-core repulsion = 20349.320140 eV Total energy + Delta-G solvation = -3844.332753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.78256 -40.57904 -38.55427 -37.83764 -37.19745 -36.21711 -36.01813 -34.61830 -33.42919 -31.33550 -29.44417 -27.35444 -26.93127 -24.27839 -23.62537 -21.99000 -20.35960 -19.85650 -19.28131 -18.87235 -18.27237 -17.96613 -17.48152 -17.31867 -17.09084 -16.54346 -15.96905 -15.84764 -15.54391 -15.32806 -14.74553 -14.64609 -14.12980 -13.92900 -13.90242 -13.58142 -13.52496 -13.43430 -13.34552 -13.13689 -12.91895 -12.79523 -12.62062 -12.53526 -12.35556 -12.13798 -11.18120 -11.14631 -10.77976 -10.71716 -10.37145 -9.92260 -8.47201 -6.16123 -0.96549 -0.06599 0.42467 1.44326 1.46852 1.55368 1.58225 1.81584 1.93782 2.08209 2.29176 2.31844 2.44812 2.91550 2.98016 3.33263 3.38706 3.56531 3.60667 3.84995 4.11619 4.15999 4.36577 4.56659 4.59261 4.63388 4.79254 4.84865 4.97069 5.40016 5.48801 5.97647 6.00825 6.27455 6.90477 6.97700 7.17509 7.75479 8.55695 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.004529 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.243526 B = 6181.095146 C = 6809.741823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -1.101 6.101 3 S 2.747 3.253 4 O -0.956 6.956 5 O -0.958 6.958 6 C -0.578 4.578 7 C -0.090 4.090 8 C -0.260 4.260 9 C 0.522 3.478 10 O -0.605 6.605 11 N -0.439 5.439 12 C -0.345 4.345 13 H 0.088 0.912 14 C 0.008 3.992 15 N -0.887 5.887 16 Si 0.994 3.006 17 H -0.278 1.278 18 H -0.281 1.281 19 H -0.256 1.256 20 C 0.201 3.799 21 C 0.245 3.755 22 N -0.477 5.477 23 C 0.099 3.901 24 O -0.116 6.116 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.433 0.567 29 H 0.179 0.821 30 H 0.276 0.724 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.069 0.011 -13.604 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.866 5.866 3 S 2.826 3.174 4 O -0.945 6.945 5 O -0.948 6.948 6 C -0.705 4.705 7 C -0.111 4.111 8 C -0.265 4.265 9 C 0.313 3.687 10 O -0.492 6.492 11 N -0.157 5.157 12 C -0.472 4.472 13 H 0.106 0.894 14 C -0.196 4.196 15 N -0.523 5.523 16 Si 0.817 3.183 17 H -0.203 1.203 18 H -0.206 1.206 19 H -0.180 1.180 20 C 0.074 3.926 21 C -0.073 4.073 22 N -0.158 5.158 23 C 0.025 3.975 24 O -0.008 6.008 25 H 0.078 0.922 26 H 0.098 0.902 27 H 0.131 0.869 28 H 0.270 0.730 29 H 0.196 0.804 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -4.591 -0.880 -14.175 14.926 hybrid contribution 0.677 -0.101 2.296 2.396 sum -3.914 -0.981 -11.879 12.546 Atomic orbital electron populations 1.21845 0.76548 1.06465 1.02710 1.55067 1.17518 1.23512 1.90514 1.00905 0.72389 0.72756 0.71359 1.93577 1.78875 1.69425 1.52661 1.93638 1.31414 1.83535 1.86165 1.35862 0.99855 1.12114 1.22676 1.23907 0.99415 0.96985 0.90797 1.21855 1.02356 1.06796 0.95536 1.17586 0.81026 0.84008 0.86079 1.90617 1.53452 1.45225 1.59888 1.43436 1.16736 1.47501 1.08055 1.19578 1.36805 1.05555 0.85257 0.89408 1.26178 0.97799 0.93054 1.02528 1.69798 1.39141 1.01383 1.42015 0.84976 0.78378 0.77933 0.77009 1.20306 1.20625 1.18034 1.19536 0.96215 0.80723 0.96118 1.29201 0.92839 0.95294 0.89944 1.80841 1.09237 1.13004 1.12739 1.25446 0.96750 0.95014 0.80316 1.83944 1.41146 1.47064 1.28640 0.92165 0.90154 0.86886 0.72963 0.80400 0.91400 0.85123 0.85970 0.72526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 11.14 127.77 1.42 2.35 16 2 N -1.10 -18.93 6.19 -206.53 -1.28 -20.21 16 3 S 2.75 66.29 5.89 -56.49 -0.33 65.96 16 4 O -0.96 -26.40 17.74 -127.90 -2.27 -28.67 16 5 O -0.96 -27.39 17.81 -128.00 -2.28 -29.67 16 6 C -0.58 -16.36 7.29 66.89 0.49 -15.87 16 7 C -0.09 -2.96 7.89 23.65 0.19 -2.78 16 8 C -0.26 -9.56 6.07 -19.00 -0.12 -9.68 16 9 C 0.52 24.19 7.57 86.62 0.66 24.85 16 10 O -0.61 -31.59 16.71 -4.18 -0.07 -31.66 16 11 N -0.44 -20.73 2.55 -649.27 -1.66 -22.39 16 12 C -0.34 -17.68 9.04 84.07 0.76 -16.92 16 13 H 0.09 4.73 7.59 -2.91 -0.02 4.71 16 14 C 0.01 0.39 4.89 84.93 0.42 0.81 16 15 N -0.89 -44.75 9.84 21.67 0.21 -44.54 16 16 Si 0.99 39.26 29.59 68.60 2.03 41.29 16 17 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 20 C 0.20 7.98 4.72 84.58 0.40 8.38 16 21 C 0.24 10.62 9.93 89.45 0.89 11.51 16 22 N -0.48 -21.87 18.54 20.00 0.37 -21.50 16 23 C 0.10 2.84 11.91 67.41 0.80 3.65 16 24 O -0.12 -3.12 10.52 4.30 0.05 -3.08 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.08 0.96 8.10 -2.39 -0.02 0.94 16 27 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.43 5.80 8.96 -96.74 -0.87 4.94 16 29 H 0.18 5.94 3.62 -2.91 -0.01 5.93 16 30 H 0.28 13.51 8.31 -92.70 -0.77 12.74 16 31 H 0.13 4.25 4.97 -2.39 -0.01 4.24 16 32 H 0.12 4.70 7.44 -2.39 -0.02 4.68 16 33 H 0.26 5.52 8.06 -2.91 -0.02 5.50 16 Total: -1.00 -73.29 310.49 1.02 -72.27 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.34 Total: 15.87 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.90 Total: 6.30 kcal Atomic # 7 Polarization: -106.28 SS G_CDS: -2.35 Total: -108.63 kcal Atomic # 8 Polarization: -88.50 SS G_CDS: -4.57 Total: -93.07 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 66.29 SS G_CDS: -0.33 Total: 65.96 kcal Total: -73.29 1.02 -72.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319495756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.846 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds