Wall clock time and date at job start Tue Mar 31 2020 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65598 * 119.99895 * 2 1 4 4 O 1.42100 * 106.40509 * 311.46393 * 3 2 1 5 5 O 1.42096 * 106.40146 * 178.53798 * 3 2 1 6 6 C 1.76196 * 107.21595 * 65.00219 * 3 2 1 7 7 C 1.35166 * 125.61482 * 89.99715 * 6 3 2 8 8 C 1.40327 * 107.13018 * 179.97438 * 7 6 3 9 9 C 1.36658 * 106.70479 * 0.02562 * 8 7 6 10 10 C 1.46514 * 125.99741 * 179.97438 * 9 8 7 11 11 O 1.21743 * 120.00202 * 8.57705 * 10 9 8 12 12 N 1.34777 * 120.00249 * 188.56500 * 10 9 8 13 13 C 1.36853 * 120.00225 * 176.13809 * 12 10 9 14 14 H 1.08003 * 119.99681 * 337.85404 * 13 12 10 15 15 C 1.39024 * 120.00205 * 158.12108 * 13 12 10 16 16 N 1.31391 * 120.00109 * 355.61539 * 15 13 12 17 17 Si 1.86799 * 120.00205 * 175.61645 * 15 13 12 18 18 H 1.48501 * 109.47240 * 89.99915 * 17 15 13 19 19 H 1.48495 * 109.47200 * 210.00108 * 17 15 13 20 20 H 1.48504 * 109.47159 * 329.99980 * 17 15 13 21 21 C 1.46501 * 120.00172 * 356.14736 * 12 10 9 22 22 C 1.47207 * 109.46833 * 277.40005 * 21 12 10 23 23 N 6.09947 * 76.28921 * 359.65079 * 2 1 3 24 24 O 1.33971 * 125.61051 * 270.30833 * 6 3 2 25 25 H 1.09003 * 109.47228 * 60.00456 * 1 2 3 26 26 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47286 * 299.99412 * 1 2 3 28 28 H 0.97000 * 119.99497 * 180.02562 * 2 1 3 29 29 H 1.08005 * 126.43229 * 359.96885 * 7 6 3 30 30 H 1.08000 * 126.64919 * 179.97438 * 8 7 6 31 31 H 0.96992 * 120.00086 * 180.02562 * 16 15 13 32 32 H 1.08998 * 109.47057 * 37.39773 * 21 12 10 33 33 H 1.08998 * 109.47366 * 157.40261 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2330 -1.0215 5 8 3.6737 1.1003 0.0348 6 6 1.9378 2.2414 1.5254 7 6 2.6416 2.1040 2.6711 8 6 2.0244 2.9158 3.6351 9 6 0.9607 3.5152 3.0212 10 6 0.0228 4.4524 3.6445 11 8 0.2433 4.8814 4.7623 12 7 -1.0841 4.8399 2.9803 13 6 -1.9998 5.6525 3.5918 14 1 -2.0457 5.6989 4.6699 15 6 -2.8747 6.4142 2.8254 16 7 -2.7662 6.4204 1.5160 17 14 -4.2043 7.4288 3.6572 18 1 -3.6782 8.7851 3.9556 19 1 -5.3786 7.5407 2.7552 20 1 -4.6132 6.7672 4.9223 21 6 -1.3071 4.3911 1.6037 22 6 -0.5587 5.2571 0.6779 23 7 0.0193 5.9256 -0.0361 24 8 0.9222 3.0878 1.7420 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.9499 -0.8401 -0.0004 29 1 3.5148 1.4855 2.8173 30 1 2.3302 3.0418 4.6632 31 1 -3.3763 6.9520 0.9814 32 1 -0.9635 3.3623 1.4968 33 1 -2.3708 4.4450 1.3717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322221951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:00 Heat of formation + Delta-G solvation = -35.892459 kcal Electronic energy + Delta-G solvation = -24371.734598 eV Core-core repulsion = 20528.118840 eV Total energy + Delta-G solvation = -3843.615758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.47481 -38.78139 -37.36348 -35.99546 -35.97472 -35.19671 -34.50062 -33.05203 -32.10095 -29.92932 -27.68041 -26.18811 -25.57775 -23.04813 -21.91143 -19.98092 -19.74946 -18.42099 -18.13482 -17.76429 -17.08792 -16.68057 -16.32878 -15.68721 -15.25065 -14.84630 -14.33669 -14.17694 -13.79709 -13.71318 -13.35816 -13.25900 -13.02653 -12.94994 -12.51514 -12.25547 -12.13322 -12.05932 -11.79280 -11.72421 -11.51422 -11.43425 -11.31087 -10.73119 -10.58487 -10.48591 -10.00310 -9.89874 -9.53321 -9.21524 -8.83535 -8.35265 -6.76592 -4.32697 0.15327 0.96226 2.22189 2.78441 3.00833 3.04532 3.11151 3.14970 3.51740 3.57389 3.75658 3.94649 4.07731 4.38751 4.61372 4.71185 4.85102 4.91336 5.12884 5.29518 5.31746 5.46715 5.58817 5.62467 5.72771 5.80558 6.15633 6.38877 6.51870 6.67050 6.84596 7.14439 7.57895 7.96022 8.63266 8.74411 8.81548 9.34124 10.23544 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.004770 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.175972 B = 5868.728032 C = 6440.477360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.115 6.115 3 S 2.726 3.274 4 O -0.933 6.933 5 O -0.946 6.946 6 C -0.601 4.601 7 C -0.081 4.081 8 C -0.185 4.185 9 C 0.031 3.969 10 C 0.497 3.503 11 O -0.553 6.553 12 N -0.408 5.408 13 C -0.300 4.300 14 H 0.116 0.884 15 C 0.033 3.967 16 N -0.867 5.867 17 Si 0.945 3.055 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.264 1.264 21 C 0.209 3.791 22 C 0.247 3.753 23 N -0.463 5.463 24 O -0.109 6.109 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.419 0.581 29 H 0.165 0.835 30 H 0.165 0.835 31 H 0.282 0.718 32 H 0.088 0.912 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -14.933 -1.528 15.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.876 5.876 3 S 2.808 3.192 4 O -0.923 6.923 5 O -0.936 6.936 6 C -0.733 4.733 7 C -0.103 4.103 8 C -0.207 4.207 9 C -0.027 4.027 10 C 0.286 3.714 11 O -0.437 6.437 12 N -0.125 5.125 13 C -0.427 4.427 14 H 0.134 0.866 15 C -0.172 4.172 16 N -0.505 5.505 17 Si 0.770 3.230 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.189 1.189 21 C 0.082 3.918 22 C -0.072 4.072 23 N -0.142 5.142 24 O -0.003 6.003 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.253 0.747 29 H 0.183 0.817 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.929 -13.028 -3.060 13.699 hybrid contribution -0.712 -0.036 1.369 1.544 sum 2.217 -13.064 -1.691 13.358 Atomic orbital electron populations 1.21582 0.77809 1.04311 1.02895 1.55347 1.16659 1.24110 1.91489 1.01416 0.72855 0.72574 0.72338 1.93642 1.78273 1.67919 1.52476 1.93630 1.30018 1.83527 1.86423 1.35663 1.01541 1.13451 1.22639 1.21774 0.99148 0.98471 0.90866 1.21956 0.96748 1.00243 1.01711 1.23633 0.99227 0.97782 0.82017 1.16458 0.81174 0.86105 0.87654 1.90756 1.74431 1.59174 1.19367 1.43684 1.17138 1.41200 1.10463 1.19960 1.09366 1.19372 0.94014 0.86628 1.25589 0.99390 0.96733 0.95512 1.69770 1.37366 1.38814 1.04528 0.85612 0.78698 0.79702 0.78981 1.19886 1.20332 1.18854 1.19180 1.02332 0.91780 0.78476 1.28943 0.91424 0.93234 0.93561 1.80913 1.12395 1.10172 1.10733 1.84513 1.40220 1.47128 1.28437 0.90800 0.89717 0.91635 0.74688 0.81723 0.81737 0.90686 0.89448 0.83252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 11.14 59.85 0.67 1.29 16 2 N -1.12 -9.74 6.19 -16.63 -0.10 -9.84 16 3 S 2.73 36.65 5.89 -107.50 -0.63 36.01 16 4 O -0.93 -16.13 17.74 -57.25 -1.02 -17.15 16 5 O -0.95 -13.85 17.83 -57.17 -1.02 -14.87 16 6 C -0.60 -9.40 7.32 29.64 0.22 -9.18 16 7 C -0.08 -1.18 10.58 -39.89 -0.42 -1.60 16 8 C -0.19 -3.14 10.64 -39.37 -0.42 -3.56 16 9 C 0.03 0.62 6.70 -36.82 -0.25 0.38 16 10 C 0.50 11.60 7.50 -12.93 -0.10 11.50 16 11 O -0.55 -14.26 16.59 5.15 0.09 -14.17 16 12 N -0.41 -9.53 2.60 -119.48 -0.31 -9.84 16 13 C -0.30 -7.31 9.30 -15.02 -0.14 -7.45 16 14 H 0.12 2.87 7.41 -52.48 -0.39 2.48 16 15 C 0.03 0.78 5.23 -17.45 -0.09 0.68 16 16 N -0.87 -20.58 8.89 55.50 0.49 -20.09 16 17 Si 0.95 18.43 29.56 -169.99 -5.02 13.41 16 18 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 C 0.21 4.35 4.75 -6.83 -0.03 4.32 16 22 C 0.25 5.85 12.70 -20.75 -0.26 5.59 16 23 N -0.46 -11.82 18.54 42.16 0.78 -11.04 16 24 O -0.11 -2.02 6.54 4.85 0.03 -1.99 16 25 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.42 2.43 8.96 -34.47 -0.31 2.12 16 29 H 0.17 1.80 8.06 -52.48 -0.42 1.37 16 30 H 0.17 2.54 8.06 -52.49 -0.42 2.11 16 31 H 0.28 6.42 8.31 -40.82 -0.34 6.08 16 32 H 0.09 1.55 5.53 -51.93 -0.29 1.26 16 33 H 0.15 3.06 6.09 -51.93 -0.32 2.74 16 LS Contribution 314.35 15.07 4.74 4.74 Total: -1.00 -33.72 314.35 -5.35 -39.08 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -2.55 Total: 3.78 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -0.83 Total: 1.98 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.86 Total: -50.80 kcal Atomic # 8 Polarization: -46.27 SS G_CDS: -1.92 Total: -48.19 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.02 Total: 13.41 kcal Atomic # 16 Polarization: 36.65 SS G_CDS: -0.63 Total: 36.01 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.72 -5.35 -39.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322221951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.183 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds