Wall clock time and date at job start Tue Mar 31 2020 04:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 S 1.65598 * 119.99895 * 2 1 4 4 O 1.42100 * 106.40509 * 311.46393 * 3 2 1 5 5 O 1.42096 * 106.40146 * 178.53798 * 3 2 1 6 6 C 1.76196 * 107.21595 * 65.00219 * 3 2 1 7 7 C 1.35166 * 125.61482 * 89.99715 * 6 3 2 8 8 C 1.40327 * 107.13018 * 179.97438 * 7 6 3 9 9 C 1.36658 * 106.70479 * 0.02562 * 8 7 6 10 10 C 1.46514 * 125.99741 * 179.97438 * 9 8 7 11 11 O 1.21743 * 120.00202 * 8.57705 * 10 9 8 12 12 N 1.34777 * 120.00249 * 188.56500 * 10 9 8 13 13 C 1.36853 * 120.00225 * 176.13809 * 12 10 9 14 14 H 1.08003 * 119.99681 * 337.85404 * 13 12 10 15 15 C 1.39024 * 120.00205 * 158.12108 * 13 12 10 16 16 N 1.31391 * 120.00109 * 355.61539 * 15 13 12 17 17 Si 1.86799 * 120.00205 * 175.61645 * 15 13 12 18 18 H 1.48501 * 109.47240 * 89.99915 * 17 15 13 19 19 H 1.48495 * 109.47200 * 210.00108 * 17 15 13 20 20 H 1.48504 * 109.47159 * 329.99980 * 17 15 13 21 21 C 1.46501 * 120.00172 * 356.14736 * 12 10 9 22 22 C 1.47207 * 109.46833 * 277.40005 * 21 12 10 23 23 N 6.09947 * 76.28921 * 359.65079 * 2 1 3 24 24 O 1.33971 * 125.61051 * 270.30833 * 6 3 2 25 25 H 1.09003 * 109.47228 * 60.00456 * 1 2 3 26 26 H 1.09005 * 109.47100 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47286 * 299.99412 * 1 2 3 28 28 H 0.97000 * 119.99497 * 180.02562 * 2 1 3 29 29 H 1.08005 * 126.43229 * 359.96885 * 7 6 3 30 30 H 1.08000 * 126.64919 * 179.97438 * 8 7 6 31 31 H 0.96992 * 120.00086 * 180.02562 * 16 15 13 32 32 H 1.08998 * 109.47057 * 37.39773 * 21 12 10 33 33 H 1.08998 * 109.47366 * 157.40261 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7120 2.2330 -1.0215 5 8 3.6737 1.1003 0.0348 6 6 1.9378 2.2414 1.5254 7 6 2.6416 2.1040 2.6711 8 6 2.0244 2.9158 3.6351 9 6 0.9607 3.5152 3.0212 10 6 0.0228 4.4524 3.6445 11 8 0.2433 4.8814 4.7623 12 7 -1.0841 4.8399 2.9803 13 6 -1.9998 5.6525 3.5918 14 1 -2.0457 5.6989 4.6699 15 6 -2.8747 6.4142 2.8254 16 7 -2.7662 6.4204 1.5160 17 14 -4.2043 7.4288 3.6572 18 1 -3.6782 8.7851 3.9556 19 1 -5.3786 7.5407 2.7552 20 1 -4.6132 6.7672 4.9223 21 6 -1.3071 4.3911 1.6037 22 6 -0.5587 5.2571 0.6779 23 7 0.0193 5.9256 -0.0361 24 8 0.9222 3.0878 1.7420 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.9499 -0.8401 -0.0004 29 1 3.5148 1.4855 2.8173 30 1 2.3302 3.0418 4.6632 31 1 -3.3763 6.9520 0.9814 32 1 -0.9635 3.3623 1.4968 33 1 -2.3708 4.4450 1.3717 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322221951.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:00 Heat of formation + Delta-G solvation = -62.716281 kcal Electronic energy + Delta-G solvation = -24372.897766 eV Core-core repulsion = 20528.118840 eV Total energy + Delta-G solvation = -3844.778926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.86347 -40.54785 -38.53618 -37.84034 -37.16815 -36.38774 -35.96179 -34.44582 -33.84649 -31.36461 -29.42619 -27.28586 -26.87506 -24.56508 -23.23342 -21.52622 -20.84298 -19.97158 -19.62247 -18.98404 -18.54021 -18.25515 -17.45839 -17.08531 -16.98457 -16.00708 -15.81470 -15.63056 -15.30239 -15.07790 -14.82830 -14.54897 -14.33485 -14.03929 -13.90160 -13.87487 -13.55749 -13.44086 -13.33520 -13.24521 -12.97807 -12.78876 -12.58453 -12.54047 -12.20791 -12.07410 -11.32063 -11.28150 -11.07084 -10.65780 -10.29660 -10.11158 -8.52637 -6.19208 -0.93976 -0.42603 0.88654 1.41913 1.45212 1.53882 1.59559 1.75320 1.96382 2.04143 2.23485 2.28143 2.49697 2.85439 2.92746 3.35722 3.45433 3.68698 3.71985 4.18745 4.26361 4.29816 4.53624 4.65848 4.70290 4.83875 4.86293 5.06939 5.10326 5.30933 5.44550 5.83204 6.11347 6.17620 6.82677 6.87620 7.03002 7.55007 8.46484 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.021350 B = 0.004770 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.175972 B = 5868.728032 C = 6440.477360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -1.091 6.091 3 S 2.745 3.255 4 O -0.972 6.972 5 O -0.955 6.955 6 C -0.596 4.596 7 C -0.072 4.072 8 C -0.167 4.167 9 C -0.011 4.011 10 C 0.496 3.504 11 O -0.589 6.589 12 N -0.421 5.421 13 C -0.332 4.332 14 H 0.101 0.899 15 C 0.006 3.994 16 N -0.887 5.887 17 Si 1.005 2.995 18 H -0.284 1.284 19 H -0.266 1.266 20 H -0.257 1.257 21 C 0.213 3.787 22 C 0.259 3.741 23 N -0.502 5.502 24 O -0.122 6.122 25 H 0.067 0.933 26 H 0.122 0.878 27 H 0.063 0.937 28 H 0.436 0.564 29 H 0.208 0.792 30 H 0.179 0.821 31 H 0.284 0.716 32 H 0.120 0.880 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -17.216 -1.609 17.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.857 5.857 3 S 2.824 3.176 4 O -0.962 6.962 5 O -0.945 6.945 6 C -0.725 4.725 7 C -0.092 4.092 8 C -0.188 4.188 9 C -0.068 4.068 10 C 0.286 3.714 11 O -0.476 6.476 12 N -0.137 5.137 13 C -0.459 4.459 14 H 0.119 0.881 15 C -0.198 4.198 16 N -0.525 5.525 17 Si 0.827 3.173 18 H -0.211 1.211 19 H -0.191 1.191 20 H -0.181 1.181 21 C 0.088 3.912 22 C -0.059 4.059 23 N -0.182 5.182 24 O -0.017 6.017 25 H 0.085 0.915 26 H 0.141 0.859 27 H 0.082 0.918 28 H 0.275 0.725 29 H 0.225 0.775 30 H 0.196 0.804 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.278 -15.329 -3.135 15.986 hybrid contribution -0.663 0.482 1.348 1.578 sum 2.615 -14.848 -1.786 15.182 Atomic orbital electron populations 1.21874 0.76671 1.06766 1.02575 1.54904 1.17168 1.23106 1.90552 1.00874 0.72468 0.72871 0.71380 1.93606 1.79020 1.69852 1.53713 1.93609 1.31031 1.83648 1.86239 1.36364 1.00381 1.12008 1.23777 1.22226 0.99769 0.97903 0.89301 1.22304 0.95137 0.98737 1.02629 1.23098 1.00463 0.99954 0.83239 1.16876 0.81264 0.85940 0.87278 1.90705 1.75463 1.60553 1.20869 1.43797 1.17261 1.41533 1.11125 1.19975 1.10882 1.21301 0.93749 0.88117 1.26272 1.00610 0.96964 0.95927 1.69839 1.38034 1.39352 1.05300 0.84737 0.76556 0.77413 0.78549 1.21060 1.19086 1.18109 1.19377 1.02244 0.92688 0.76913 1.29519 0.90655 0.92675 0.93060 1.80894 1.13787 1.11432 1.12070 1.84440 1.41490 1.47952 1.27807 0.91464 0.85912 0.91789 0.72488 0.77537 0.80386 0.90563 0.86242 0.82905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 11.14 127.77 1.42 2.26 16 2 N -1.09 -15.50 6.19 -206.53 -1.28 -16.77 16 3 S 2.74 67.53 5.89 -56.49 -0.33 67.20 16 4 O -0.97 -32.60 17.74 -127.93 -2.27 -34.87 16 5 O -0.96 -25.29 17.83 -128.00 -2.28 -27.57 16 6 C -0.60 -17.28 7.32 67.11 0.49 -16.79 16 7 C -0.07 -1.84 10.58 22.07 0.23 -1.60 16 8 C -0.17 -5.32 10.64 22.41 0.24 -5.09 16 9 C -0.01 -0.43 6.70 24.06 0.16 -0.27 16 10 C 0.50 23.59 7.50 86.40 0.65 24.24 16 11 O -0.59 -31.21 16.59 -4.49 -0.07 -31.29 16 12 N -0.42 -20.07 2.60 -650.12 -1.69 -21.77 16 13 C -0.33 -16.62 9.30 84.10 0.78 -15.83 16 14 H 0.10 5.21 7.41 -2.91 -0.02 5.19 16 15 C 0.01 0.26 5.23 84.95 0.44 0.71 16 16 N -0.89 -42.54 8.89 21.68 0.19 -42.34 16 17 Si 1.01 37.97 29.56 68.60 2.03 40.00 16 18 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 19 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 20 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 21 C 0.21 8.97 4.75 84.58 0.40 9.38 16 22 C 0.26 12.42 12.70 89.44 1.14 13.55 16 23 N -0.50 -26.03 18.54 20.01 0.37 -25.66 16 24 O -0.12 -4.40 6.54 -5.55 -0.04 -4.44 16 25 H 0.07 0.97 8.10 -2.39 -0.02 0.95 16 26 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.44 3.33 8.96 -96.74 -0.87 2.46 16 29 H 0.21 3.48 8.06 -2.91 -0.02 3.46 16 30 H 0.18 5.13 8.06 -2.91 -0.02 5.10 16 31 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 32 H 0.12 4.18 5.53 -2.39 -0.01 4.17 16 33 H 0.15 6.32 6.09 -2.39 -0.01 6.31 16 Total: -1.00 -74.49 314.35 0.91 -73.58 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.33 Total: 13.39 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 5.96 Total: 10.55 kcal Atomic # 7 Polarization: -104.13 SS G_CDS: -2.41 Total: -106.54 kcal Atomic # 8 Polarization: -93.50 SS G_CDS: -4.66 Total: -98.17 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Atomic # 16 Polarization: 67.53 SS G_CDS: -0.33 Total: 67.20 kcal Total: -74.49 0.91 -73.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322221951.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.861 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds