Wall clock time and date at job start Tue Mar 31 2020 04:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47572 * 338.96477 * 3 2 1 5 5 C 1.36939 * 120.00091 * 273.02788 * 4 3 2 6 6 H 1.07999 * 120.00074 * 187.45767 * 5 4 3 7 7 C 1.38815 * 119.99973 * 7.46662 * 5 4 3 8 8 N 1.31624 * 120.00010 * 27.08057 * 7 5 4 9 9 Si 1.86794 * 120.00003 * 207.08093 * 7 5 4 10 10 H 1.48509 * 109.47044 * 89.99825 * 9 7 5 11 11 H 1.48498 * 109.47324 * 209.99393 * 9 7 5 12 12 H 1.48497 * 109.47371 * 330.00281 * 9 7 5 13 13 S 1.65600 * 119.99852 * 93.02897 * 4 3 2 14 14 O 1.42092 * 106.40562 * 336.46045 * 13 4 3 15 15 O 1.42107 * 106.40142 * 203.53824 * 13 4 3 16 16 C 1.76205 * 107.21679 * 90.00335 * 13 4 3 17 17 N 1.30427 * 125.99498 * 90.02281 * 16 13 4 18 18 N 1.39927 * 108.91911 * 179.97438 * 17 16 13 19 19 H 0.97004 * 125.74569 * 179.97438 * 18 17 16 20 20 C 1.34227 * 108.51440 * 0.02562 * 18 17 16 21 21 C 1.50693 * 126.29669 * 179.97438 * 20 18 17 22 22 C 1.38125 * 107.40568 * 0.22601 * 20 18 17 23 23 C 1.47283 * 126.42542 * 179.74103 * 22 20 18 24 24 O 1.21531 * 119.99764 * 90.02253 * 23 22 20 25 25 O 1.34755 * 120.00349 * 270.02241 * 23 22 20 26 26 H 4.40634 * 5.51442 * 179.97438 * 4 1 2 27 27 H 1.09004 * 109.46962 * 218.96268 * 3 2 1 28 28 H 1.09000 * 109.47169 * 98.96957 * 3 2 1 29 29 H 0.96993 * 120.00016 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47350 * 90.02355 * 21 20 18 31 31 H 1.09006 * 109.47348 * 330.02458 * 21 20 18 32 32 H 1.09004 * 109.47131 * 210.02734 * 21 20 18 33 33 H 0.96696 * 116.99982 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2882 0.4957 5 6 3.3043 -1.4851 1.8403 6 1 3.7766 -2.3878 2.1986 7 6 2.8687 -0.5244 2.7427 8 7 1.8702 0.2723 2.4250 9 14 3.6995 -0.3623 4.4078 10 1 4.8259 0.6004 4.3074 11 1 2.7160 0.1292 5.4060 12 1 4.2173 -1.6872 4.8338 13 16 3.4830 -2.5071 -0.5699 14 8 2.7249 -2.2437 -1.7424 15 8 3.3849 -3.7208 0.1628 16 6 5.1770 -2.3354 -1.0235 17 7 6.1925 -2.8846 -0.4168 18 7 7.3699 -2.5118 -1.0746 19 1 8.2677 -2.7829 -0.8268 20 6 7.0480 -1.7149 -2.1056 21 6 8.0094 -1.0851 -3.0803 22 6 5.6740 -1.5738 -2.1055 23 6 4.8762 -0.7808 -3.0563 24 8 4.4604 -1.2938 -4.0765 25 8 4.6074 0.5136 -2.7950 26 1 -1.0498 -0.0004 0.0003 27 1 3.0089 0.7999 0.6462 28 1 3.0092 0.1610 -1.0151 29 1 1.5661 0.9438 3.0554 30 1 8.1606 -1.7556 -3.9262 31 1 8.9633 -0.9047 -2.5846 32 1 7.5997 -0.1393 -3.4350 33 1 4.0805 0.9932 -3.4487 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588465735.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:13 Heat of formation + Delta-G solvation = -38.224698 kcal Electronic energy + Delta-G solvation = -24792.699281 eV Core-core repulsion = 20948.982389 eV Total energy + Delta-G solvation = -3843.716892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.061 amu Computer time = 2.83 seconds Orbital eigenvalues (eV) -42.71937 -40.77500 -38.23563 -38.03997 -37.03527 -36.82730 -34.05608 -33.67374 -32.90259 -32.77206 -28.73617 -28.30022 -25.74623 -24.99787 -24.25404 -21.37295 -20.39418 -19.77385 -19.32686 -18.85415 -18.74719 -18.20766 -17.52261 -17.28802 -16.58687 -16.41100 -16.27649 -16.12931 -15.34296 -15.04250 -14.53229 -14.42300 -14.28707 -13.85682 -13.56471 -13.47296 -13.28694 -13.14669 -12.84383 -12.80609 -12.69156 -12.56685 -12.31717 -12.21341 -11.99590 -11.82292 -11.51888 -11.22859 -10.91821 -10.53081 -10.09403 -10.05277 -8.22365 -5.79770 -0.67088 0.26507 0.58501 0.95673 1.48582 1.50460 1.52873 1.61252 1.99344 2.22123 2.39140 2.53868 2.65129 2.80798 3.08051 3.13657 3.55373 3.87151 3.93082 4.00236 4.28259 4.40549 4.59392 4.63928 4.73753 4.93564 5.00368 5.23256 5.49869 5.51893 5.60542 5.85964 6.13740 6.39377 6.89339 6.93867 7.25998 7.29283 8.73783 Molecular weight = 313.06amu Principal moments of inertia in cm(-1) A = 0.014758 B = 0.006749 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.883788 B = 4147.985252 C = 4852.139787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.141 4.141 3 C 0.250 3.750 4 N -0.827 5.827 5 C -0.346 4.346 6 H 0.103 0.897 7 C 0.017 3.983 8 N -0.853 5.853 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.281 1.281 12 H -0.271 1.271 13 S 2.656 3.344 14 O -0.973 6.973 15 O -0.982 6.982 16 C -0.446 4.446 17 N -0.209 5.209 18 N -0.428 5.428 19 H 0.466 0.534 20 C 0.159 3.841 21 C -0.098 4.098 22 C -0.244 4.244 23 C 0.569 3.431 24 O -0.518 6.518 25 O -0.498 6.498 26 H 0.232 0.768 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.273 0.727 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.098 0.902 33 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.238 4.565 -8.286 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.143 4.143 3 C 0.125 3.875 4 N -0.658 5.658 5 C -0.480 4.480 6 H 0.120 0.880 7 C -0.190 4.190 8 N -0.490 5.490 9 Si 0.788 3.212 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.195 1.195 13 S 2.742 3.258 14 O -0.962 6.962 15 O -0.971 6.971 16 C -0.692 4.692 17 N -0.033 5.033 18 N -0.140 5.140 19 H 0.316 0.684 20 C 0.026 3.974 21 C -0.156 4.156 22 C -0.259 4.259 23 C 0.409 3.591 24 O -0.406 6.406 25 O -0.312 6.312 26 H 0.249 0.751 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.130 0.870 31 H 0.140 0.860 32 H 0.116 0.884 33 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 13.160 2.912 -7.664 15.505 hybrid contribution 0.263 0.807 0.164 0.864 sum 13.423 3.719 -7.500 15.820 Atomic orbital electron populations 1.25074 0.96368 1.00274 1.05646 1.23353 0.95033 0.99957 0.95998 1.17912 0.84839 0.87066 0.97681 1.53328 1.69186 1.27589 1.15712 1.19445 1.41627 1.06982 0.79909 0.87955 1.25748 0.95020 0.95930 1.02326 1.70312 1.19806 1.20793 1.38126 0.85391 0.78710 0.78851 0.78199 1.19235 1.20652 1.19540 1.04263 0.74923 0.74229 0.72337 1.93519 1.68193 1.85766 1.48722 1.93431 1.86656 1.44927 1.72132 1.36174 1.23854 1.06237 1.02934 1.77133 0.90210 1.18871 1.17107 1.46454 1.09833 1.36564 1.21148 0.68353 1.22128 0.93172 0.91395 0.90705 1.20940 0.97059 1.01588 0.96040 1.18828 0.93911 1.10476 1.02659 1.19600 0.75976 0.80470 0.83012 1.90869 1.49472 1.72096 1.28165 1.84617 1.69045 1.23035 1.54526 0.75128 0.88417 0.89733 0.91614 0.87026 0.85980 0.88379 0.70394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 87. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.26 19.25 74.32 1.43 -9.83 16 2 C -0.14 -6.82 11.20 31.13 0.35 -6.47 16 3 C 0.25 11.70 5.10 84.58 0.43 12.13 16 4 N -0.83 -41.86 2.88 -352.51 -1.02 -42.87 16 5 C -0.35 -18.43 9.36 84.03 0.79 -17.65 16 6 H 0.10 5.59 7.43 -2.91 -0.02 5.57 16 7 C 0.02 0.87 4.86 84.86 0.41 1.29 16 8 N -0.85 -43.65 9.10 21.65 0.20 -43.45 16 9 Si 0.96 40.00 29.63 68.60 2.03 42.04 16 10 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 11 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 S 2.66 131.91 5.72 -56.49 -0.32 131.59 16 14 O -0.97 -49.73 15.69 -128.00 -2.01 -51.74 16 15 O -0.98 -54.28 16.90 -128.00 -2.16 -56.44 16 16 C -0.45 -18.78 7.30 85.67 0.63 -18.15 16 17 N -0.21 -7.96 12.63 -54.20 -0.68 -8.65 16 18 N -0.43 -10.59 7.28 -46.77 -0.34 -10.93 16 19 H 0.47 6.54 8.96 -213.43 -1.91 4.63 16 20 C 0.16 3.88 7.30 42.16 0.31 4.18 16 21 C -0.10 -1.13 10.25 71.23 0.73 -0.40 16 22 C -0.24 -8.58 5.99 -20.16 -0.12 -8.70 16 23 C 0.57 19.56 6.43 70.20 0.45 20.01 16 24 O -0.52 -20.35 17.90 19.74 0.35 -20.00 16 25 O -0.50 -13.40 12.19 -56.66 -0.69 -14.09 16 26 H 0.23 8.05 7.80 -4.43 -0.03 8.02 16 27 H 0.10 4.61 6.52 -2.38 -0.02 4.60 16 28 H 0.08 3.52 6.39 -2.39 -0.02 3.50 16 29 H 0.27 13.16 8.31 -92.71 -0.77 12.39 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.10 1.10 7.96 -2.39 -0.02 1.08 16 33 H 0.43 7.23 9.11 -74.06 -0.67 6.55 16 Total: -1.00 -80.85 317.04 -0.62 -81.47 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -1.38 Total: 16.66 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: 5.40 Total: -23.59 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -1.84 Total: -105.90 kcal Atomic # 8 Polarization: -137.77 SS G_CDS: -4.51 Total: -142.28 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.04 kcal Atomic # 16 Polarization: 131.91 SS G_CDS: -0.32 Total: 131.59 kcal Total: -80.85 -0.62 -81.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588465735.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.250 kcal (2) G-P(sol) polarization free energy of solvation -80.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.83 seconds