Wall clock time and date at job start Tue Mar 31 2020 04:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47133 * 2 1 4 4 C 1.36941 * 120.00546 * 293.75891 * 3 2 1 5 5 H 1.08001 * 120.00165 * 149.39224 * 4 3 2 6 6 C 1.38811 * 119.99750 * 329.39683 * 4 3 2 7 7 N 1.31617 * 120.00098 * 337.57515 * 6 4 3 8 8 Si 1.86796 * 120.00225 * 157.58387 * 6 4 3 9 9 H 1.48498 * 109.47222 * 59.99369 * 8 6 4 10 10 H 1.48491 * 109.47483 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46652 * 299.99854 * 8 6 4 12 12 S 1.65604 * 119.99721 * 113.75957 * 3 2 1 13 13 O 1.42095 * 106.40244 * 336.46139 * 12 3 2 14 14 O 1.42103 * 106.39994 * 203.53980 * 12 3 2 15 15 C 1.76205 * 107.21606 * 90.00210 * 12 3 2 16 16 C 1.34722 * 125.66941 * 90.01947 * 15 12 3 17 17 C 1.40945 * 107.02332 * 179.70840 * 16 15 12 18 18 C 1.35892 * 106.74403 * 0.40833 * 17 16 15 19 19 C 1.47884 * 125.92287 * 179.85602 * 18 17 16 20 20 N 1.34210 * 126.70948 * 359.73795 * 19 18 17 21 21 N 1.28980 * 107.25276 * 180.02562 * 20 19 18 22 22 N 1.28721 * 108.99851 * 359.97438 * 21 20 19 23 23 H 0.96993 * 125.31668 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.36716 * 0.02562 * 22 21 20 25 25 O 1.34288 * 125.66386 * 269.97090 * 15 12 3 26 26 H 1.09006 * 109.46450 * 299.99672 * 1 2 3 27 27 H 1.08997 * 109.46895 * 59.99179 * 1 2 3 28 28 H 1.08991 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46786 * 240.00653 * 2 1 3 30 30 H 1.08994 * 109.47387 * 120.00783 * 2 1 3 31 31 H 0.97002 * 120.00355 * 180.02562 * 7 6 4 32 32 H 1.08001 * 126.48530 * 359.97438 * 16 15 12 33 33 H 1.08000 * 126.62946 * 180.26031 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7962 2.1861 -1.0854 5 1 1.6829 3.2520 -0.9531 6 6 1.7165 1.6320 -2.3556 7 7 2.2700 0.4631 -2.5996 8 14 0.8238 2.5454 -3.7187 9 1 1.4747 3.8614 -3.9415 10 1 0.8812 1.7472 -4.9696 11 1 -0.5939 2.7541 -3.3287 12 16 2.8392 1.9692 1.3127 13 8 2.4448 1.1734 2.4219 14 8 2.6916 3.3821 1.2782 15 6 4.5500 1.6409 1.0479 16 6 5.4209 2.4619 0.4294 17 6 6.6745 1.8178 0.4408 18 6 6.4953 0.6235 1.0638 19 6 7.5402 -0.3952 1.3039 20 7 8.8317 -0.3192 0.9472 21 7 9.4014 -1.4082 1.3386 22 7 8.5271 -2.1531 1.9197 23 1 8.7009 -3.0267 2.3035 24 7 7.3844 -1.5572 1.9109 25 8 5.2026 0.5312 1.4300 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8902 30 1 1.8934 -0.5139 0.8898 31 1 2.2146 0.0760 -3.4873 32 1 5.2010 3.4320 0.0087 33 1 7.5984 2.1986 0.0312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590679583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:43 Heat of formation + Delta-G solvation = 79.672077 kcal Electronic energy + Delta-G solvation = -23977.453891 eV Core-core repulsion = 20171.142138 eV Total energy + Delta-G solvation = -3806.311753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.54533 -41.98567 -36.33020 -35.83339 -34.56048 -34.42926 -33.49887 -32.56625 -32.10032 -29.41927 -29.27976 -25.14222 -24.70654 -24.31625 -21.70115 -21.38403 -20.95833 -19.22131 -18.66231 -18.01827 -17.28872 -16.90647 -16.58270 -15.88448 -15.47122 -15.00889 -14.47782 -14.14962 -13.73039 -13.06000 -12.99224 -12.72792 -12.55585 -12.43409 -12.40340 -12.16115 -11.52964 -11.41623 -11.22526 -11.17352 -11.10497 -11.07086 -10.77842 -10.73927 -10.63321 -10.39918 -10.25689 -9.90863 -9.57342 -9.54024 -8.32555 -8.09428 -6.79302 -4.32272 0.81156 1.21253 1.54270 2.08005 2.38623 2.89292 2.99962 3.03860 3.05401 3.09804 3.78714 3.91018 4.29545 4.49766 4.57572 4.99771 5.22665 5.30416 5.36493 5.73986 5.89609 6.04701 6.12252 6.19541 6.25001 6.28321 6.32863 6.62079 6.75115 6.84229 6.96274 7.20231 7.30900 7.40275 8.02581 8.05709 8.38985 8.89305 10.06193 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.004573 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.034296 B = 6121.363823 C = 6477.682193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 N -0.773 5.773 4 C -0.215 4.215 5 H 0.121 0.879 6 C 0.036 3.964 7 N -0.800 5.800 8 Si 0.931 3.069 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.263 1.263 12 S 2.483 3.517 13 O -0.990 6.990 14 O -0.973 6.973 15 C -0.485 4.485 16 C -0.137 4.137 17 C -0.149 4.149 18 C 0.039 3.961 19 C 0.262 3.738 20 N -0.254 5.254 21 N -0.049 5.049 22 N -0.226 5.226 23 H 0.477 0.523 24 N -0.279 5.279 25 O -0.110 6.110 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.282 0.718 32 H 0.165 0.835 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -4.686 0.781 7.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.021 4.021 3 N -0.596 5.596 4 C -0.370 4.370 5 H 0.139 0.861 6 C -0.181 4.181 7 N -0.438 5.438 8 Si 0.755 3.245 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.188 1.188 12 S 2.579 3.421 13 O -0.979 6.979 14 O -0.962 6.962 15 C -0.606 4.606 16 C -0.157 4.157 17 C -0.172 4.172 18 C -0.016 4.016 19 C -0.017 4.017 20 N -0.129 5.129 21 N -0.044 5.044 22 N -0.073 5.073 23 H 0.331 0.669 24 N -0.131 5.131 25 O -0.001 6.001 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.182 0.818 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.158 -4.991 1.912 8.154 hybrid contribution 0.368 -0.158 -0.840 0.930 sum 6.526 -5.150 1.073 8.382 Atomic orbital electron populations 1.21892 0.96366 1.00180 1.01961 1.21582 0.94142 0.82652 1.03711 1.54587 1.49346 1.20520 1.35100 1.20198 1.37638 0.94137 0.85028 0.86137 1.26014 0.96367 0.96591 0.99151 1.69914 1.34275 1.16281 1.23326 0.85887 0.80386 0.79737 0.78502 1.18712 1.20316 1.18803 1.15337 0.72392 0.75124 0.79231 1.93325 1.80683 1.69716 1.54214 1.93357 1.84168 1.30865 1.87832 1.39030 1.23786 0.89169 1.08657 1.21716 0.91403 1.01502 1.01096 1.21880 0.99854 0.93290 1.02127 1.18361 0.83197 0.93622 1.06441 1.21967 0.90812 0.90726 0.98165 1.76131 1.04217 1.13222 1.19327 1.78884 1.18661 0.98034 1.08865 1.47689 1.02944 1.18982 1.37650 0.66892 1.75256 1.07804 1.08490 1.21547 1.84271 1.17175 1.37610 1.61066 0.93464 0.92028 0.93179 0.87754 0.91682 0.90680 0.81766 0.82247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.96 37.16 0.37 -2.34 16 2 C 0.10 2.25 5.84 -4.04 -0.02 2.22 16 3 N -0.77 -17.89 2.98 -59.91 -0.18 -18.07 16 4 C -0.21 -4.90 8.67 -15.06 -0.13 -5.03 16 5 H 0.12 2.72 7.34 -52.49 -0.39 2.33 16 6 C 0.04 0.78 4.63 -17.43 -0.08 0.70 16 7 N -0.80 -17.86 11.06 55.49 0.61 -17.25 16 8 Si 0.93 16.80 29.61 -169.99 -5.03 11.76 16 9 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 10 H -0.28 -4.97 7.11 56.52 0.40 -4.56 16 11 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 12 S 2.48 59.53 5.78 -107.50 -0.62 58.91 16 13 O -0.99 -25.52 16.66 -57.24 -0.95 -26.47 16 14 O -0.97 -24.61 16.68 -57.17 -0.95 -25.56 16 15 C -0.48 -11.04 7.35 29.49 0.22 -10.82 16 16 C -0.14 -2.80 10.60 -39.80 -0.42 -3.22 16 17 C -0.15 -2.76 10.84 -39.40 -0.43 -3.19 16 18 C 0.04 0.79 7.26 -36.48 -0.26 0.52 16 19 C 0.26 4.60 8.20 -156.24 -1.28 3.32 16 20 N -0.25 -4.06 12.53 32.08 0.40 -3.66 16 21 N -0.05 -0.64 13.46 60.35 0.81 0.17 16 22 N -0.23 -2.48 7.90 60.35 0.48 -2.00 16 23 H 0.48 2.54 8.96 -340.34 -3.05 -0.51 16 24 N -0.28 -4.32 12.41 32.10 0.40 -3.92 16 25 O -0.11 -2.48 10.67 4.71 0.05 -2.43 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.16 7.41 -51.93 -0.38 0.77 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.10 2.31 5.53 -51.92 -0.29 2.02 16 30 H 0.06 1.38 7.03 -51.93 -0.37 1.01 16 31 H 0.28 5.85 8.31 -40.82 -0.34 5.51 16 32 H 0.16 3.05 8.06 -52.49 -0.42 2.62 16 33 H 0.16 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -30.60 311.40 -7.64 -38.24 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -5.30 Total: 3.41 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -2.04 Total: -17.82 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 2.52 Total: -44.73 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -1.86 Total: -54.47 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.76 kcal Atomic # 16 Polarization: 59.53 SS G_CDS: -0.62 Total: 58.91 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.60 -7.64 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.913 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds