Wall clock time and date at job start Tue Mar 31 2020 04:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47133 * 2 1 4 4 C 1.36941 * 120.00546 * 293.75891 * 3 2 1 5 5 H 1.08001 * 120.00165 * 149.39224 * 4 3 2 6 6 C 1.38811 * 119.99750 * 329.39683 * 4 3 2 7 7 N 1.31617 * 120.00098 * 337.57515 * 6 4 3 8 8 Si 1.86796 * 120.00225 * 157.58387 * 6 4 3 9 9 H 1.48498 * 109.47222 * 59.99369 * 8 6 4 10 10 H 1.48491 * 109.47483 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46652 * 299.99854 * 8 6 4 12 12 S 1.65604 * 119.99721 * 113.75957 * 3 2 1 13 13 O 1.42095 * 106.40244 * 336.46139 * 12 3 2 14 14 O 1.42103 * 106.39994 * 203.53980 * 12 3 2 15 15 C 1.76205 * 107.21606 * 90.00210 * 12 3 2 16 16 C 1.34722 * 125.66941 * 90.01947 * 15 12 3 17 17 C 1.40945 * 107.02332 * 179.70840 * 16 15 12 18 18 C 1.35892 * 106.74403 * 0.40833 * 17 16 15 19 19 C 1.47884 * 125.92287 * 179.85602 * 18 17 16 20 20 N 1.34210 * 126.70948 * 359.73795 * 19 18 17 21 21 N 1.28980 * 107.25276 * 180.02562 * 20 19 18 22 22 N 1.28721 * 108.99851 * 359.97438 * 21 20 19 23 23 H 0.96993 * 125.31668 * 179.97438 * 22 21 20 24 24 N 1.28871 * 109.36716 * 0.02562 * 22 21 20 25 25 O 1.34288 * 125.66386 * 269.97090 * 15 12 3 26 26 H 1.09006 * 109.46450 * 299.99672 * 1 2 3 27 27 H 1.08997 * 109.46895 * 59.99179 * 1 2 3 28 28 H 1.08991 * 109.47240 * 179.97438 * 1 2 3 29 29 H 1.09011 * 109.46786 * 240.00653 * 2 1 3 30 30 H 1.08994 * 109.47387 * 120.00783 * 2 1 3 31 31 H 0.97002 * 120.00355 * 180.02562 * 7 6 4 32 32 H 1.08001 * 126.48530 * 359.97438 * 16 15 12 33 33 H 1.08000 * 126.62946 * 180.26031 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7962 2.1861 -1.0854 5 1 1.6829 3.2520 -0.9531 6 6 1.7165 1.6320 -2.3556 7 7 2.2700 0.4631 -2.5996 8 14 0.8238 2.5454 -3.7187 9 1 1.4747 3.8614 -3.9415 10 1 0.8812 1.7472 -4.9696 11 1 -0.5939 2.7541 -3.3287 12 16 2.8392 1.9692 1.3127 13 8 2.4448 1.1734 2.4219 14 8 2.6916 3.3821 1.2782 15 6 4.5500 1.6409 1.0479 16 6 5.4209 2.4619 0.4294 17 6 6.6745 1.8178 0.4408 18 6 6.4953 0.6235 1.0638 19 6 7.5402 -0.3952 1.3039 20 7 8.8317 -0.3192 0.9472 21 7 9.4014 -1.4082 1.3386 22 7 8.5271 -2.1531 1.9197 23 1 8.7009 -3.0267 2.3035 24 7 7.3844 -1.5572 1.9109 25 8 5.2026 0.5312 1.4300 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8902 30 1 1.8934 -0.5139 0.8898 31 1 2.2146 0.0760 -3.4873 32 1 5.2010 3.4320 0.0087 33 1 7.5984 2.1986 0.0312 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590679583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:14:41 Heat of formation + Delta-G solvation = 56.335569 kcal Electronic energy + Delta-G solvation = -23978.465838 eV Core-core repulsion = 20171.142138 eV Total energy + Delta-G solvation = -3807.323700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.068 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.71206 -43.55594 -38.06770 -37.67479 -36.28252 -35.74675 -34.72774 -34.10871 -33.85603 -31.05940 -30.75198 -26.87648 -25.88385 -25.63553 -23.36031 -22.90689 -22.39106 -20.48233 -20.30964 -19.61324 -18.64311 -18.49396 -18.27843 -17.45478 -17.08808 -16.71520 -16.18936 -15.37201 -15.33468 -14.74075 -14.61123 -14.22103 -14.07242 -14.02460 -13.75398 -13.64648 -13.13710 -12.71662 -12.69023 -12.64836 -12.58017 -12.57558 -12.42912 -12.40778 -12.19421 -12.06568 -11.90050 -11.58980 -11.22291 -11.10363 -9.94850 -9.72456 -8.51352 -6.10809 -0.51351 -0.19815 0.00146 0.86700 1.03624 1.54419 1.57757 1.60402 1.61898 1.70314 2.25327 2.54256 2.68083 2.79973 3.12419 3.30090 3.82213 3.85643 4.02817 4.13113 4.36644 4.41334 4.62796 4.67703 4.70556 4.77804 4.99159 5.24169 5.25082 5.27179 5.43879 5.59189 5.65863 5.76729 6.30091 6.59835 6.84619 7.12931 8.34334 Molecular weight = 313.07amu Principal moments of inertia in cm(-1) A = 0.017247 B = 0.004573 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.034296 B = 6121.363823 C = 6477.682193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 N -0.773 5.773 4 C -0.215 4.215 5 H 0.121 0.879 6 C 0.011 3.989 7 N -0.810 5.810 8 Si 0.994 3.006 9 H -0.259 1.259 10 H -0.269 1.269 11 H -0.256 1.256 12 S 2.457 3.543 13 O -1.023 7.023 14 O -1.000 7.000 15 C -0.519 4.519 16 C -0.138 4.138 17 C -0.145 4.145 18 C 0.032 3.968 19 C 0.241 3.759 20 N -0.264 5.264 21 N -0.037 5.037 22 N -0.189 5.189 23 H 0.500 0.500 24 N -0.288 5.288 25 O -0.133 6.133 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.293 0.707 32 H 0.177 0.823 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 -5.364 -1.181 8.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 N -0.592 5.592 4 C -0.374 4.374 5 H 0.138 0.862 6 C -0.206 4.206 7 N -0.447 5.447 8 Si 0.814 3.186 9 H -0.184 1.184 10 H -0.194 1.194 11 H -0.180 1.180 12 S 2.558 3.442 13 O -1.012 7.012 14 O -0.990 6.990 15 C -0.641 4.641 16 C -0.159 4.159 17 C -0.167 4.167 18 C -0.024 4.024 19 C -0.038 4.038 20 N -0.139 5.139 21 N -0.032 5.032 22 N -0.041 5.041 23 H 0.360 0.640 24 N -0.142 5.142 25 O -0.026 6.026 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.194 0.806 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 6.520 -5.709 0.028 8.666 hybrid contribution 0.353 -0.114 -0.366 0.522 sum 6.874 -5.823 -0.339 9.015 Atomic orbital electron populations 1.21873 0.94143 1.02105 1.01737 1.21715 0.95955 0.81845 1.02997 1.54967 1.47840 1.21048 1.35383 1.20621 1.36356 0.94621 0.85837 0.86166 1.26846 0.96218 0.97017 1.00562 1.69959 1.33536 1.16715 1.24496 0.84949 0.79352 0.78616 0.75664 1.18374 1.19381 1.18029 1.17361 0.72585 0.74500 0.79740 1.93228 1.81633 1.70048 1.56328 1.93266 1.84859 1.32643 1.88189 1.38914 1.24272 0.90165 1.10758 1.22030 0.91884 1.01690 1.00257 1.22212 1.00258 0.92602 1.01634 1.18889 0.82737 0.94798 1.05928 1.21760 0.90950 0.91169 0.99901 1.76133 1.03476 1.14313 1.19936 1.78825 1.18287 0.97545 1.08511 1.47719 1.01379 1.19284 1.35701 0.63995 1.75198 1.09411 1.08238 1.21354 1.84219 1.18495 1.37987 1.61903 0.93790 0.92045 0.90219 0.88407 0.92391 0.89571 0.80555 0.79003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 9.96 71.98 0.72 -4.37 16 2 C 0.10 4.33 5.84 86.38 0.50 4.84 16 3 N -0.77 -36.36 2.98 -343.44 -1.02 -37.38 16 4 C -0.21 -9.74 8.67 84.03 0.73 -9.01 16 5 H 0.12 5.41 7.34 -2.91 -0.02 5.38 16 6 C 0.01 0.45 4.63 84.86 0.39 0.85 16 7 N -0.81 -34.84 11.06 21.65 0.24 -34.60 16 8 Si 0.99 32.15 29.61 68.60 2.03 34.18 16 9 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 10 H -0.27 -8.35 7.11 99.48 0.71 -7.64 16 11 H -0.26 -8.05 7.11 99.48 0.71 -7.34 16 12 S 2.46 123.24 5.78 -56.49 -0.33 122.91 16 13 O -1.02 -55.65 16.66 -127.94 -2.13 -57.78 16 14 O -1.00 -52.78 16.68 -128.00 -2.14 -54.92 16 15 C -0.52 -24.58 7.35 67.01 0.49 -24.09 16 16 C -0.14 -5.76 10.60 22.13 0.23 -5.52 16 17 C -0.14 -5.34 10.84 22.39 0.24 -5.10 16 18 C 0.03 1.27 7.26 24.28 0.18 1.45 16 19 C 0.24 8.32 8.20 137.09 1.12 9.45 16 20 N -0.26 -8.07 12.53 -52.42 -0.66 -8.72 16 21 N -0.04 -0.88 13.46 37.02 0.50 -0.38 16 22 N -0.19 -3.73 7.90 37.02 0.29 -3.43 16 23 H 0.50 3.98 8.96 -347.52 -3.11 0.87 16 24 N -0.29 -8.63 12.41 -52.37 -0.65 -9.28 16 25 O -0.13 -6.26 10.67 -6.04 -0.06 -6.33 16 26 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.06 2.22 7.41 -2.39 -0.02 2.20 16 28 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.10 4.33 5.53 -2.38 -0.01 4.31 16 30 H 0.06 2.55 7.03 -2.39 -0.02 2.53 16 31 H 0.29 11.46 8.31 -92.71 -0.77 10.69 16 32 H 0.18 6.65 8.06 -2.91 -0.02 6.63 16 33 H 0.19 5.57 8.06 -2.91 -0.02 5.54 16 Total: -1.00 -66.49 311.40 -1.23 -67.72 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -1.92 Total: 19.54 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 4.61 Total: -31.51 kcal Atomic # 7 Polarization: -92.51 SS G_CDS: -1.30 Total: -93.81 kcal Atomic # 8 Polarization: -114.70 SS G_CDS: -4.33 Total: -119.03 kcal Atomic # 14 Polarization: 32.15 SS G_CDS: 2.03 Total: 34.18 kcal Atomic # 16 Polarization: 123.24 SS G_CDS: -0.33 Total: 122.91 kcal Total: -66.49 -1.23 -67.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590679583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.055 kcal (2) G-P(sol) polarization free energy of solvation -66.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds