Wall clock time and date at job start Tue Mar 31 2020 04:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86804 * 120.00096 * 2 1 4 4 H 1.48498 * 109.46818 * 269.99986 * 3 2 1 5 5 H 1.48500 * 109.47191 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47241 * 149.99793 * 3 2 1 7 7 C 1.38817 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99741 * 359.97438 * 7 2 1 9 9 O 1.34854 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.34734 * 116.99722 * 179.97438 * 9 7 2 11 11 O 1.21504 * 119.99796 * 0.02562 * 10 9 7 12 12 C 1.47663 * 119.99825 * 179.97438 * 10 9 7 13 13 C 1.39661 * 120.15401 * 179.97438 * 12 10 9 14 14 C 1.37933 * 119.84656 * 180.02562 * 13 12 10 15 15 C 1.38380 * 120.15342 * 0.02562 * 14 13 12 16 16 S 1.76193 * 119.84601 * 179.97438 * 15 14 13 17 17 O 1.42105 * 104.27847 * 206.07097 * 16 15 14 18 18 O 1.42101 * 104.27778 * 333.92767 * 16 15 14 19 19 C 1.81397 * 104.44909 * 89.99930 * 16 15 14 20 20 C 1.50700 * 109.47317 * 179.97438 * 19 16 15 21 21 N 1.34778 * 120.00205 * 179.97438 * 20 19 16 22 22 O 1.21284 * 119.99762 * 0.02562 * 20 19 16 23 23 C 1.38378 * 120.30645 * 0.25167 * 15 14 13 24 24 C 1.37935 * 120.15725 * 359.48270 * 23 15 14 25 25 H 0.96999 * 119.99714 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.07799 * 0.02562 * 13 12 10 27 27 H 1.08001 * 119.92732 * 179.97438 * 14 13 12 28 28 H 1.09004 * 109.47032 * 299.99903 * 19 16 15 29 29 H 1.09000 * 109.47124 * 60.00175 * 19 16 15 30 30 H 0.96995 * 120.00010 * 359.97438 * 21 20 19 31 31 H 0.97000 * 119.99918 * 180.02562 * 21 20 19 32 32 H 1.08000 * 119.91981 * 179.74999 * 23 15 14 33 33 H 1.07995 * 120.07885 * 180.23823 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0083 -1.2022 0.0005 8 1 1.4682 -2.1374 0.0014 9 8 3.3568 -1.2022 0.0011 10 6 3.9684 -2.4027 0.0021 11 8 3.3066 -3.4217 0.0021 12 6 5.4430 -2.4800 0.0022 13 6 6.0804 -3.7227 0.0038 14 6 7.4582 -3.7875 0.0043 15 6 8.2088 -2.6250 0.0039 16 16 9.9683 -2.7172 0.0053 17 8 10.3826 -1.4997 0.6097 18 8 10.2530 -3.9703 0.6119 19 6 10.4216 -2.7425 -1.7510 20 6 11.9209 -2.8206 -1.8817 21 7 12.4901 -2.8519 -3.1030 22 8 12.6152 -2.8562 -0.8879 23 6 7.5838 -1.3903 0.0080 24 6 6.2068 -1.3106 0.0020 25 1 -0.4850 0.8401 -0.0004 26 1 5.4958 -4.6308 0.0046 27 1 7.9524 -4.7478 0.0060 28 1 9.9690 -3.6105 -2.2305 29 1 10.0622 -1.8329 -2.2321 30 1 11.9348 -2.8246 -3.8977 31 1 13.4552 -2.9025 -3.1871 32 1 8.1758 -0.4870 0.0117 33 1 5.7205 -0.3464 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771612034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:05:04 Heat of formation + Delta-G solvation = -185.328825 kcal Electronic energy + Delta-G solvation = -22782.441450 eV Core-core repulsion = 18900.052893 eV Total energy + Delta-G solvation = -3882.388556 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 313.054 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54206 -40.71126 -39.90023 -38.24505 -37.51789 -37.03791 -34.95352 -34.62339 -32.87049 -32.23550 -31.19556 -28.08784 -25.51734 -23.90265 -22.50970 -22.01724 -20.30310 -20.15373 -19.35932 -18.88737 -18.74908 -17.76436 -17.32649 -17.20320 -16.89906 -16.79418 -16.45617 -16.05966 -15.77595 -15.60651 -15.03341 -14.79210 -14.63139 -14.39345 -14.18111 -13.88873 -13.73665 -13.34564 -13.19386 -13.11250 -12.51344 -12.42943 -12.33571 -12.25331 -11.97052 -11.85990 -11.63133 -11.34935 -10.90953 -10.85622 -10.60394 -10.21393 -8.63269 -6.48676 -1.20334 -0.78097 0.15700 1.24897 1.29586 1.32312 1.46838 1.53534 1.75910 2.13166 2.23896 2.26456 2.47790 2.87928 2.95748 3.05520 3.60303 3.67830 3.79806 3.86422 4.05214 4.14452 4.30468 4.32595 4.47138 4.81831 4.87254 4.90826 5.20125 5.37849 5.59485 5.69290 5.79148 6.18831 6.37291 6.70309 7.10120 7.41132 8.48773 Molecular weight = 313.05amu Principal moments of inertia in cm(-1) A = 0.025852 B = 0.003104 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.832283 B = 9018.790239 C = 9487.822487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.019 3.981 3 Si 0.981 3.019 4 H -0.253 1.253 5 H -0.265 1.265 6 H -0.245 1.245 7 C -0.408 4.408 8 H 0.060 0.940 9 O -0.239 6.239 10 C 0.437 3.563 11 O -0.566 6.566 12 C -0.061 4.061 13 C -0.092 4.092 14 C -0.024 4.024 15 C -0.642 4.642 16 S 2.538 3.462 17 O -0.956 6.956 18 O -0.956 6.956 19 C -0.636 4.636 20 C 0.537 3.463 21 N -0.815 5.815 22 O -0.594 6.594 23 C -0.026 4.026 24 C -0.099 4.099 25 H 0.293 0.707 26 H 0.144 0.856 27 H 0.179 0.821 28 H 0.212 0.788 29 H 0.212 0.788 30 H 0.427 0.573 31 H 0.417 0.583 32 H 0.179 0.821 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.586 -1.591 -10.729 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.177 1.177 5 H -0.190 1.190 6 H -0.168 1.168 7 C -0.484 4.484 8 H 0.078 0.922 9 O -0.148 6.148 10 C 0.286 3.714 11 O -0.463 6.463 12 C -0.062 4.062 13 C -0.111 4.111 14 C -0.042 4.042 15 C -0.728 4.728 16 S 2.717 3.283 17 O -0.953 6.953 18 O -0.953 6.953 19 C -0.768 4.768 20 C 0.320 3.680 21 N -0.380 5.380 22 O -0.476 6.476 23 C -0.045 4.045 24 C -0.118 4.118 25 H 0.103 0.897 26 H 0.162 0.838 27 H 0.197 0.803 28 H 0.230 0.770 29 H 0.230 0.770 30 H 0.260 0.740 31 H 0.249 0.751 32 H 0.196 0.804 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 25.974 -1.764 -9.312 27.649 hybrid contribution -1.472 0.174 -0.787 1.678 sum 24.503 -1.590 -10.099 26.550 Atomic orbital electron populations 1.69677 1.07721 1.30678 1.46455 1.25643 0.95993 1.02878 0.93725 0.85120 0.79295 0.75372 0.80284 1.17693 1.18985 1.16832 1.20398 0.77343 0.96102 1.54522 0.92178 1.83518 1.22327 1.31792 1.77121 1.21602 0.89895 0.81864 0.78034 1.90662 1.67821 1.36965 1.50889 1.19603 0.87903 0.96812 1.01891 1.21478 0.95460 0.96544 0.97585 1.21160 0.92275 0.98820 0.91980 1.30948 1.26101 0.99509 1.16262 1.04196 0.72496 0.73661 0.77908 1.93532 1.80636 1.47125 1.73971 1.93530 1.83274 1.44590 1.73893 1.30649 1.01057 1.18974 1.26082 1.19585 0.88518 0.75170 0.84731 1.43524 1.12976 1.74365 1.07138 1.90932 1.65393 1.52715 1.38518 1.21225 0.93818 0.97637 0.91782 1.21759 0.94586 0.98179 0.97314 0.89686 0.83830 0.80346 0.77042 0.77044 0.73999 0.75057 0.80420 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.28 13.96 21.64 0.30 -52.97 16 2 C 0.02 1.07 5.50 84.89 0.47 1.54 16 3 Si 0.98 41.21 28.62 68.60 1.96 43.18 16 4 H -0.25 -9.86 7.11 99.48 0.71 -9.16 16 5 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 6 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 7 C -0.41 -24.60 10.11 67.96 0.69 -23.91 16 8 H 0.06 4.14 7.09 -2.91 -0.02 4.11 16 9 O -0.24 -12.47 7.82 11.33 0.09 -12.38 16 10 C 0.44 20.98 7.84 70.31 0.55 21.53 16 11 O -0.57 -30.99 15.59 19.82 0.31 -30.68 16 12 C -0.06 -2.13 5.87 -20.10 -0.12 -2.25 16 13 C -0.09 -2.62 9.60 22.54 0.22 -2.40 16 14 C -0.02 -0.50 9.45 22.23 0.21 -0.29 16 15 C -0.64 -12.65 5.67 22.34 0.13 -12.52 16 16 S 2.54 47.50 4.29 -56.49 -0.24 47.26 16 17 O -0.96 -24.70 17.10 -127.64 -2.18 -26.88 16 18 O -0.96 -24.59 17.11 -127.64 -2.18 -26.78 16 19 C -0.64 -3.77 6.46 71.24 0.46 -3.31 16 20 C 0.54 6.62 8.12 87.66 0.71 7.33 16 21 N -0.82 -2.41 8.87 -173.53 -1.54 -3.95 16 22 O -0.59 -14.39 16.70 -3.04 -0.05 -14.44 16 23 C -0.03 -0.55 9.45 22.23 0.21 -0.34 16 24 C -0.10 -2.82 9.62 22.54 0.22 -2.60 16 25 H 0.29 15.40 8.31 -92.71 -0.77 14.63 16 26 H 0.14 4.13 7.65 -2.91 -0.02 4.10 16 27 H 0.18 2.62 7.56 -2.91 -0.02 2.60 16 28 H 0.21 -0.55 8.14 -2.39 -0.02 -0.57 16 29 H 0.21 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.43 -2.06 8.83 -92.71 -0.82 -2.88 16 31 H 0.42 0.79 8.93 -92.71 -0.83 -0.04 16 32 H 0.18 2.66 7.55 -2.91 -0.02 2.64 16 33 H 0.15 4.15 7.61 -2.91 -0.02 4.13 16 Total: -1.00 -94.37 318.88 -0.24 -94.61 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: -0.44 Total: 0.26 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.74 Total: -17.23 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -1.24 Total: -56.92 kcal Atomic # 8 Polarization: -107.14 SS G_CDS: -4.02 Total: -111.16 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.96 Total: 43.18 kcal Atomic # 16 Polarization: 47.50 SS G_CDS: -0.24 Total: 47.26 kcal Total: -94.37 -0.24 -94.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771612034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.717 kcal (2) G-P(sol) polarization free energy of solvation -94.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds