Wall clock time and date at job start Tue Mar 31 2020 04:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21273 * 119.99968 * 2 1 4 4 N 1.34781 * 119.99866 * 180.02562 * 2 1 3 5 5 C 1.39287 * 119.99528 * 180.02562 * 4 2 1 6 6 N 1.30371 * 125.84125 * 0.02562 * 5 4 2 7 7 O 1.41638 * 107.98634 * 179.97438 * 6 5 4 8 8 N 1.41672 * 107.67668 * 0.02562 * 7 6 5 9 9 C 1.30908 * 107.79221 * 359.97438 * 8 7 6 10 10 C 1.47826 * 125.89208 * 179.97438 * 9 8 7 11 11 N 1.31081 * 125.14432 * 185.25273 * 10 9 8 12 12 C 1.35495 * 109.70901 * 179.97438 * 11 10 9 13 13 C 1.39884 * 133.31676 * 180.02562 * 12 11 10 14 14 C 1.37645 * 119.77882 * 180.02562 * 13 12 11 15 15 C 1.38774 * 120.54238 * 359.97438 * 14 13 12 16 16 C 1.37952 * 120.46863 * 359.97438 * 15 14 13 17 17 C 1.38741 * 119.85074 * 0.02562 * 16 15 14 18 18 N 1.37337 * 125.13916 * 4.95366 * 10 9 8 19 19 C 1.37046 * 126.44447 * 0.02562 * 18 10 9 20 20 H 1.08008 * 119.99471 * 319.14262 * 19 18 10 21 21 C 1.39035 * 120.00488 * 139.14242 * 19 18 10 22 22 N 1.31307 * 120.00327 * 154.76260 * 21 19 18 23 23 Si 1.86801 * 119.99749 * 334.75855 * 21 19 18 24 24 H 1.48506 * 109.47127 * 94.71179 * 23 21 19 25 25 H 1.48499 * 109.47141 * 214.71162 * 23 21 19 26 26 H 1.48498 * 109.47062 * 334.71222 * 23 21 19 27 27 H 1.08997 * 109.46846 * 239.99861 * 1 2 3 28 28 H 1.08997 * 109.47203 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47107 * 119.99434 * 1 2 3 30 30 H 0.97000 * 119.99970 * 359.97438 * 4 2 1 31 31 H 1.07998 * 120.11121 * 359.96547 * 13 12 11 32 32 H 1.07998 * 119.72917 * 180.02562 * 14 13 12 33 33 H 1.07997 * 119.77039 * 180.02562 * 15 14 13 34 34 H 1.07999 * 120.06963 * 179.97438 * 16 15 14 35 35 H 0.97003 * 120.00418 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 -0.0005 5 6 3.5738 -1.1672 0.0000 6 7 4.3371 -0.1103 0.0015 7 8 5.6853 -0.5445 0.0021 8 7 5.6810 -1.9612 0.0003 9 6 4.4333 -2.3574 -0.0007 10 6 3.9698 -3.7611 -0.0033 11 7 2.7197 -4.1427 -0.1024 12 6 2.6511 -5.4956 -0.0723 13 6 1.5901 -6.4045 -0.1413 14 6 1.8429 -7.7563 -0.0825 15 6 3.1427 -8.2257 0.0443 16 6 4.2013 -7.3439 0.1128 17 6 3.9670 -5.9777 0.0552 18 7 4.7843 -4.8627 0.0921 19 6 6.1501 -4.8580 0.2053 20 1 6.7378 -4.1642 -0.3777 21 6 6.7791 -5.7461 1.0704 22 7 8.0219 -6.1083 0.8502 23 14 5.8562 -6.4241 2.5463 24 1 5.2553 -7.7358 2.1944 25 1 6.7979 -6.5995 3.6811 26 1 4.7819 -5.4761 2.9365 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3633 1.0276 0.0005 29 1 -0.3633 -0.5138 -0.8901 30 1 1.6959 -2.0073 -0.0005 31 1 0.5758 -6.0468 -0.2395 32 1 1.0231 -8.4573 -0.1362 33 1 3.3268 -9.2889 0.0889 34 1 5.2102 -7.7163 0.2119 35 1 8.4607 -6.7283 1.4536 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000064258.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:07:58 Heat of formation + Delta-G solvation = 140.712058 kcal Electronic energy + Delta-G solvation = -25453.727890 eV Core-core repulsion = 21650.452172 eV Total energy + Delta-G solvation = -3803.275717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 313.096 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57428 -40.79812 -39.46388 -36.74489 -35.30412 -34.50485 -32.69063 -32.29246 -31.71294 -29.71738 -29.53046 -28.65600 -25.66555 -24.55514 -23.12050 -21.70193 -21.08165 -20.28257 -19.83657 -18.59770 -17.84597 -16.88630 -16.54770 -16.24725 -16.01412 -15.71195 -15.12777 -14.82935 -14.62258 -14.43920 -13.96306 -13.60233 -13.41643 -13.19387 -13.05574 -12.90475 -12.67961 -12.00245 -11.82521 -11.71875 -11.62748 -11.46793 -11.32640 -11.24808 -10.71802 -10.55868 -10.41492 -10.19157 -10.17412 -9.46324 -9.17656 -9.16553 -7.77296 -7.54023 -7.31111 -4.89783 0.72712 1.40957 2.04570 2.15873 2.36408 2.69974 2.78305 2.88226 2.96727 3.04321 3.32411 3.54454 3.60803 3.81706 4.21759 4.37759 4.47158 4.63812 4.93311 5.09624 5.16305 5.30507 5.46842 5.52019 5.61373 5.66687 5.94641 6.04140 6.08938 6.18700 6.25728 6.59274 6.84977 6.93203 7.01864 7.14033 7.19229 7.43275 7.53050 7.69112 7.90802 8.11576 8.48413 8.58759 9.71810 Molecular weight = 313.10amu Principal moments of inertia in cm(-1) A = 0.014003 B = 0.005704 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.134346 B = 4907.654971 C = 6464.131423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.503 3.497 3 O -0.496 6.496 4 N -0.623 5.623 5 C 0.320 3.680 6 N -0.286 5.286 7 O 0.015 5.985 8 N -0.241 5.241 9 C 0.165 3.835 10 C 0.226 3.774 11 N -0.510 5.510 12 C 0.062 3.938 13 C -0.084 4.084 14 C -0.126 4.126 15 C -0.143 4.143 16 C -0.073 4.073 17 C -0.002 4.002 18 N -0.257 5.257 19 C -0.330 4.330 20 H 0.140 0.860 21 C 0.087 3.913 22 N -0.786 5.786 23 Si 0.869 3.131 24 H -0.241 1.241 25 H -0.272 1.272 26 H -0.256 1.256 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.440 0.560 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -1.542 0.139 13.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.290 3.710 3 O -0.366 6.366 4 N -0.281 5.281 5 C 0.045 3.955 6 N -0.043 5.043 7 O -0.117 6.117 8 N 0.012 4.988 9 C -0.018 4.018 10 C -0.028 4.028 11 N -0.236 5.236 12 C -0.067 4.067 13 C -0.104 4.104 14 C -0.147 4.147 15 C -0.164 4.164 16 C -0.093 4.093 17 C -0.117 4.117 18 N 0.073 4.927 19 C -0.462 4.462 20 H 0.157 0.843 21 C -0.133 4.133 22 N -0.412 5.412 23 Si 0.691 3.309 24 H -0.165 1.165 25 H -0.197 1.197 26 H -0.179 1.179 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.283 0.717 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.627 0.728 0.110 11.650 hybrid contribution -0.130 -1.808 0.832 1.995 sum -11.757 -1.080 0.942 11.844 Atomic orbital electron populations 1.21896 0.89309 1.06156 1.05267 1.21356 0.91356 0.82696 0.75556 1.90849 1.70248 1.30572 1.44936 1.43400 1.00923 1.12507 1.71317 1.22444 0.87373 0.89086 0.96626 1.80440 0.88711 1.14788 1.20331 1.93303 1.18883 1.13395 1.86084 1.80489 1.14612 0.90428 1.13226 1.22080 0.88926 0.90818 1.00019 1.19417 0.85961 0.84355 1.13025 1.69856 1.15809 1.11241 1.26703 1.18678 0.92319 0.89424 1.06255 1.20015 0.96530 0.91286 1.02543 1.20680 0.96403 0.94554 1.03056 1.20633 0.92167 0.98476 1.05114 1.20118 0.99710 0.89467 1.00007 1.18892 0.91451 0.89527 1.11851 1.41407 1.06417 1.02763 1.42101 1.19790 0.76931 1.23026 1.26432 0.84321 1.25527 0.95764 0.94047 0.97954 1.69718 1.12148 1.24825 1.34510 0.86929 0.80691 0.81939 0.81325 1.16484 1.19693 1.17937 0.88536 0.88233 0.88473 0.71685 0.86187 0.86309 0.86323 0.86197 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 10.32 36.01 0.37 -0.92 16 2 C 0.50 6.98 7.90 -10.98 -0.09 6.90 16 3 O -0.50 -9.06 15.78 5.56 0.09 -8.98 16 4 N -0.62 -9.44 5.42 -9.81 -0.05 -9.49 16 5 C 0.32 6.17 7.98 -153.31 -1.22 4.95 16 6 N -0.29 -6.01 11.12 32.54 0.36 -5.64 16 7 O 0.02 0.33 13.62 12.24 0.17 0.50 16 8 N -0.24 -5.43 11.34 34.45 0.39 -5.04 16 9 C 0.16 3.51 7.20 -80.87 -0.58 2.92 16 10 C 0.23 4.95 7.74 -154.15 -1.19 3.76 16 11 N -0.51 -10.12 9.72 -8.60 -0.08 -10.20 16 12 C 0.06 1.23 7.21 -84.70 -0.61 0.62 16 13 C -0.08 -1.34 10.10 -39.18 -0.40 -1.73 16 14 C -0.13 -1.83 10.01 -39.60 -0.40 -2.23 16 15 C -0.14 -2.30 10.03 -39.49 -0.40 -2.69 16 16 C -0.07 -1.43 7.06 -39.50 -0.28 -1.71 16 17 C 0.00 -0.05 5.29 -83.83 -0.44 -0.49 16 18 N -0.26 -6.04 2.42 -57.20 -0.14 -6.18 16 19 C -0.33 -8.24 9.38 -14.93 -0.14 -8.38 16 20 H 0.14 3.70 7.26 -52.48 -0.38 3.32 16 21 C 0.09 2.09 4.84 -17.48 -0.08 2.00 16 22 N -0.79 -19.15 13.95 55.50 0.77 -18.38 16 23 Si 0.87 18.65 24.82 -169.99 -4.22 14.43 16 24 H -0.24 -4.77 5.67 56.52 0.32 -4.45 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 27 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.71 8.12 -51.93 -0.42 0.28 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.44 5.88 7.19 -40.82 -0.29 5.59 16 31 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 32 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.12 2.41 6.05 -52.49 -0.32 2.09 16 35 H 0.29 6.47 8.31 -40.82 -0.34 6.13 16 LS Contribution 310.53 15.07 4.68 4.68 Total: -1.00 -29.43 310.53 -6.24 -35.67 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -2.74 Total: 5.65 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -5.46 Total: 2.99 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: 1.25 Total: -54.94 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.25 Total: -8.48 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.22 Total: 14.43 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.43 -6.24 -35.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000064258.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.381 kcal (2) G-P(sol) polarization free energy of solvation -29.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds